Spg004885 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004885
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotrans_gag domain-containing protein
Location	scaffold9: 19834790 .. 19837375 (+)
RNA-Seq Expression	Spg004885
Synteny	Spg004885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAATCTGGGTTCAACATGCCAATCTCTGGTTTTTTATTCGGTTTGAGCTACATAGGAAGAAATAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAATCCCTTTTCTAACAAATTTCGTGAAGGAAGCTTGAGCTAAATCTGATAAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAACTAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTTTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCTTATTCAATTTCCTACAACTTTAATGAAGAATCCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATCGGTTGAGAATCGCGTTTTCATTTATTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTGGATGTATAGTACATTAATTTTGGTTAAGTATTAAGGAAGTTATGGGTGTCGGAAGTTAGGATATAAAATCTGGAAAATCTGGAAAAGTAGAATGTGAAGTGTGATTTTTAATTCAAGTGTTTAGAATTCATGAGCATGGAAGAATAAGACTATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTGAGTGACAAAACGAATTTCGAAAATTGTTTCCAAACGATTGTTCATGTTTAGATGTTTTACATGCTTTCTATGAATGATACATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGGTTCATATACGAGCACGTGGTTAATGACTTTATGAAAAGTAGTTGAAACGATATCTTTTAAAGTAAAGTATGTATTAGCAAGTATTGTGTAATGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCCTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCTTGTGATTTTCTGAGATTTATATTGACTACATGATTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAATGATGTTGTCCTGAGTACTGGACGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAAATCAGTCATGTTAGTTAATATGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGTACCTGCGATGTTTTTGAGAAAGCTTTTATCATTGCACGTTTATGTTTAACACCTTGGTTGGGCAGCTTTATACGTTTAAAGTTTTATCACGTGTTATTGTTTTCGAATGTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCACCCTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCGTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATATTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCAGTTGTATATGTTTCTGGTGGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTCAGGGCGACACCTCGTGTATGTTGAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTTCATGTAGAATATTTTATATCTAAGATTAGTACGTTTATCAGGTTCAACGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGATGATGTTCATTGGCTTCACGCCATCTTTCAGACTAAGCTAGCAGGTGGTCCGGGAGTGGGTGTGAAAGACGATGTTGGGCCACTCTCACCCATGCATATCAAAGGATAATCCTGACCAAAAAGGAGTTCATAGTTAGCTCAGGATTAAGATTGAGTTACCTAGGTCATCGTATGAAATAGTCAGTCTTATCAATAAACGGTGTTATAAAGTAAGAGTGACTTATTTCTCGGTCCGCTCTTGTGCAAACTCATTTACACAAGATGCCCCTACTCGCATGTCTCTACATGAACGATACAGGATCAAATCGTTTGCGTAGTTTGCAAAGTAGACCACATCCATAGTGTCCCCAGGATATGGTACCCAGCCTTATCCTTATACTATAGACCATTTAGGTTATATACTAGAACTTGATCCCTGTCCATATTCATAATATAGTTCGAGTATTTCATGTTATAACCAAGGATGTTTATCTATTGGATTTAGGTTATATATAAACAAGCAATTTACTGAATAACATCTTTATTGCAAAAAGATTACAAACTATGAGTTTTAGGACATAAAACCCAACAGTCTGTAGTTTACTTGCCTTACTCGACTGACACACACAACTGTATAGGTGAAATCCCTAAGCGGAAGCTGAAGAAGTGTACAACACTCGAGCGGAAGCGATTTGGATCGAAAGCACTTTAA

mRNA sequence

ATGGCAGAATCTGGGTTCAACATGCCAATCTCTGGTTTTTTATTCGGTTTGAGCTACATAGGAAGAAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCGTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGATGATGTTCATTGGCTTCACGCCATCTTTCAGACTAAGCTAGCAGGTGAAATCCCTAAGCGGAAGCTGAAGAAGTGTACAACACTCGAGCGGAAGCGATTTGGATCGAAAGCACTTTAA

Coding sequence (CDS)

ATGGCAGAATCTGGGTTCAACATGCCAATCTCTGGTTTTTTATTCGGTTTGAGCTACATAGGAAGAAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCGTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGATGATGTTCATTGGCTTCACGCCATCTTTCAGACTAAGCTAGCAGGTGAAATCCCTAAGCGGAAGCTGAAGAAGTGTACAACACTCGAGCGGAAGCGATTTGGATCGAAAGCACTTTAA

Protein sequence

MAESGFNMPISGFLFGLSYIGRNKRPRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAGEIPKRKLKKCTTLERKRFGSKAL

Homology

[Close]

BLAST of Spg004885 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 5.8e-10
Identity = 57/141 (40.43%), Postives = 68/141 (48.23%), Query Frame = 0


Query: 1   MAESGFNMPISGFLFGLSYI----GRNKR------------------PRGNRSSLQTRKL 60
           +AESG N      LFGLSY+    G + R                  PRGNR +L T KL
Sbjct: 32  IAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRPNLHTGKL 91

Query: 61  AKTVEIELPVRDTLPTSAESSRSSSSSTLQ--------------------------EGQR 94
            KTVEIELPV DTLPTSAESS+S+SS+ L+                          EG  
Sbjct: 92  DKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASYVCWEGSA 151

[Close]

BLAST of Spg004885 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 45/86 (52.33%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 25  RPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTL 84
           RPRGNR SLQT KL KT                 VEIELPV DTLPTSAES  S+S ST 
Sbjct: 54  RPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRST- 113

Query: 85  QEGQRVSLEEDDVHWLHAIFQTKLAG 94
                  +  DDV WLHA+F+ K AG
Sbjct: 114 -----GIVRGDDVCWLHAVFRAKTAG 133

[Close]

BLAST of Spg004885 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 51/126 (40.48%), Postives = 59/126 (46.83%), Query Frame = 0


Query: 14  LFGLSYIGRNKRPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSA 73
           LFGL Y    KRPRGNR+SLQT +L KT                 VEIELPV DTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 74  ESSRSSSSSTLQ-----------------------------EGQRVSLEEDDVHWLHAIF 94
           ESS S+SS+ L+                              G    +  D+V WLHA+F
Sbjct: 79  ESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVF 138

[Close]

BLAST of Spg004885 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 14 LFGLSYIGRNKRPRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ 69
          LF LSY    KRPRGNR SLQT KL KTVEIELP+ DTLPT AES  S+SS+ L+
Sbjct: 19 LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLE 73

[Close]

BLAST of Spg004885 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 47/100 (47.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 26  PRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQ 85
           PRGNRSSLQT KL KT                 VEIELPV DT PTSAESS S+SSS   
Sbjct: 182 PRGNRSSLQTGKLDKTVIFPLSMLSVLRDNDVVVEIELPVPDTHPTSAESSESNSSSA-- 241

Query: 86  EGQRVSLEEDDVHWLHAIFQTKLAGEIPKRKLKKCTTLER 109
                 +  DDV WLHA+F+ K+    P     +C+ L R
Sbjct: 242 ----GIVRGDDVCWLHAVFRAKICFLTP----NECSPLVR 271

[Close]

BLAST of Spg004885 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 57/141 (40.43%), Postives = 68/141 (48.23%), Query Frame = 0


Query: 1   MAESGFNMPISGFLFGLSYI----GRNKR------------------PRGNRSSLQTRKL 60
           +AESG N      LFGLSY+    G + R                  PRGNR +L T KL
Sbjct: 32  IAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRPNLHTGKL 91

Query: 61  AKTVEIELPVRDTLPTSAESSRSSSSSTLQ--------------------------EGQR 94
            KTVEIELPV DTLPTSAESS+S+SS+ L+                          EG  
Sbjct: 92  DKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASYVCWEGSA 151

[Close]

BLAST of Spg004885 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.9e-08
Identity = 45/86 (52.33%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 25  RPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTL 84
           RPRGNR SLQT KL KT                 VEIELPV DTLPTSAES  S+S ST 
Sbjct: 54  RPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRST- 113

Query: 85  QEGQRVSLEEDDVHWLHAIFQTKLAG 94
                  +  DDV WLHA+F+ K AG
Sbjct: 114 -----GIVRGDDVCWLHAVFRAKTAG 133

[Close]

BLAST of Spg004885 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.7e-08
Identity = 51/126 (40.48%), Postives = 59/126 (46.83%), Query Frame = 0


Query: 14  LFGLSYIGRNKRPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSA 73
           LFGL Y    KRPRGNR+SLQT +L KT                 VEIELPV DTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 74  ESSRSSSSSTLQ-----------------------------EGQRVSLEEDDVHWLHAIF 94
           ESS S+SS+ L+                              G    +  D+V WLHA+F
Sbjct: 79  ESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVF 138

[Close]

BLAST of Spg004885 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.7e-08
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 14 LFGLSYIGRNKRPRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ 69
          LF LSY    KRPRGNR SLQT KL KTVEIELP+ DTLPT AES  S+SS+ L+
Sbjct: 19 LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLE 73

[Close]

BLAST of Spg004885 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-07
Identity = 47/100 (47.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 26  PRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQ 85
           PRGNRSSLQT KL KT                 VEIELPV DT PTSAESS S+SSS   
Sbjct: 182 PRGNRSSLQTGKLDKTVIFPLSMLSVLRDNDVVVEIELPVPDTHPTSAESSESNSSSA-- 241

Query: 86  EGQRVSLEEDDVHWLHAIFQTKLAGEIPKRKLKKCTTLER 109
                 +  DDV WLHA+F+ K+    P     +C+ L R
Sbjct: 242 ----GIVRGDDVCWLHAVFRAKICFLTP----NECSPLVR 271

The following BLAST results are available for this feature:

BLAST of Spg004885 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052218.1	5.8e-10	40.43	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0060199.1	1.2e-07	52.33	uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0051980.1	1.6e-07	40.48	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]
KAA0040420.1	1.6e-07	69.09	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
TYK01208.1	7.9e-07	47.00	uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]	[more]

BLAST of Spg004885 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAH6	2.8e-10	40.43	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3BAD1	5.9e-08	52.33	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7U9X4	7.7e-08	40.48	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TAS6	7.7e-08	69.09	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BQ75	3.8e-07	47.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg004885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004885.1	Spg004885.1	mRNA