Spg004842 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004842
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 22422304 .. 22425971 (+)
RNA-Seq ExpressionSpg004842
SyntenySpg004842
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTAGTAATCGTTGACGAGACCAGACGTGTAGTCCCTATAGTGAGAGGAGTGGCGATTGGATTTGTCACTGAGGTAGAAATGACCGGCAACTGGGAATGGTCTGTACCAGAGGAGCTTGATGATGAAGCCATGAAAAAAAAATTAACCTATAGCTCTGATACCATATAATAGCACAGAAAGAGCAAAGGAAAGTTTCTGAATAATGCTCAGTGTGTAGAGGCTGAGCAATACTGCTTGTATTAATAACCGTAGAAGGCAACACATGTAATGCAACTACAAGAGAGAAAATAACAAATACAGAAAGATAAATAATTAGGCATAATAACAACATTACAAGGTTAAATATGCTAATAATCTCTAACCTCTTGTTTGAGGATAGATGTCACAGCGCCTCAGACACTAGCTAATACAACAAATTAACTAAATAAATAGTTGGTTGCCACATAAGAAACTATGTTGATACAACGAACAATATGGATAATTTGTGAGCTGAGGCTGGTCTAATCCTAACAATCACATTGAAACTCTTAAACTATTGAAAAACCAATTATGAACCTAAACTCAAATTATATTGGCGATGAAGCTGAAAACATAGATGCCAAATTTGTAATGTAACCAAACAATGACTAGTAATTTTTATTTTCTTTCTCCAAGTTGAGAGAGAGACAAATTAAAAATAAGAGAAAGGAAGAAAAATAATAAACTAGCCATTAAAATTAAAATTGAACAGGCAGAGCACAAGTATGAATATCCGAGGGAGGTAGAGAATGATTCAAAACCATGTGTGTGGCCGAGTCAAAGATACGGTTTTCCTCTTCAATAAACAAGTAGGTTGGGTATGAAAATGAGAGGGGTAGGACCGTCATTTCACCAAAACCTCGAATCACCTTAATCAATTAATTAATTATTATTTAACTCATATACAAAAGGAGCAGCATGGAAAGTATCTTTGTGGAAGCCGAAGAGGATGATGAAGAGAGGTTCAAAGCTTTTGAAGAATAAAGAAAGAATGGAGGATTCAAATGAAAACAACGACGTTGTTGCTCACTCGCCTTTTCTTTTATCCATCTTCAACTTCTTCTTGCGAATTTTGATGTCCATTTTGAAGTTTCTAACTGTGTATGTTTACCGTCCGATACCGTTGTCATCCAAAGATTCTTACGTCGATGAATCACATCCGCCGCCCACAGCGGTTGACCCACCTGTTGATCAATTGGTAAGCTTCTTCGGTTTCATGGGTTGAGCTATAAATTTTCTTAAAAAAATATCTTAACTTAAGCACGTGCGAATTCACGTTGGGGCCAGTGCCCCCTGAAATTTTGAGTTTTATCTATATTTATTATGTTTTTCACCAATATTTCAAATTATATTGTTGGCAAGGGGGTGCACCGAGGTACGCTCGCCGCAAGGTCTTTGTTTTGATTCAAGGTTAATGCATAAATTCTTTTGAATTTCTTTTTGTTTTATATTCTTTGAATTCCGTTTATTTTATTTATTTCATATTTATACTGTTATAATTTTTAGTACACTTTGATTTTTATTTTTCTGCATAGTATTTTAATTTTTAGTAAACTTTGGACCAATTATACTAGTTTTGTGTTATAATTTTTTAAAAAATTTCTAATACATCTATGAACTTTCTGTATTGAACATAATAGGTTTTAGATATATTCAAAATTTTTTAAAATCAACCAATTCGAGCTTAGTTAAGTAGATAAAGACATTAATTATCATCTTAAAGGTTAATGATTCAATTCCTCAACCCCTCAATTGTTGAACTAAAAAAATATATATAAAATTAACTATTTCATTAGATATAAAATTAAATTTTGCATCTACTTGAACCTTAAACTTTTAGTTGGAATTGATAGATACATTAATTTAAAAAAAAATCTAATTTTTAAAATTTTCGAATACGAAAGAGACCTAATAGATACAAAATTGAAAATTACAAGATCTATTAGACACAAAATACAAAATTCAAGGACTTAAAAGACACTTTTTAAGTTTATCAACTATATGGACACATTTATGCAGTTGTGTCCCTAGCTTTATGGATCCGCCACTGAACTCAAGTAATATCTCAGTTAAAAAAATTTAGGAGAAAATTAGAGGAAAAACTATAAAATCTAAAAAAAAAAATGAGCTTGTTTTCGCGTCACTTTTTCTTTCGTCAGGTAGCCTTAGGTATGTTTGGAAACAAAGATAATATAACACCGTATTTAAAAATCTAAAGTCTAGTTTAATAATCATTTGAGTTCCGTTTCATAATCATTTGGACTCCGTTTGATAACCATTTGGTTTGTCAAAATTATGCTTATTTTCTCTCAATTTTCTCACCATGCTTTTCATTTTTGTTAATGAGACATTAGAGTTTTTTGTCAAATTCTAAAAACAAAAACAAGTTTTTGAAAACTACTTTTTTTTTTGTTTTCAAAAATTGACTTGGTTTTTGAAAACATGAGAAGGATGTGGATAACAACTCAAAGAAATGTATGGGTGAAAAGAGCGTTTATAAGCTAAATTTTCAAAAACCAAAAACAAAAAATGAGATGGTTATCAAACGGGACCTTGATTTTTTGTTTTTGGTTTTTGAAAAATGTGCTTGTTTTCTTTCCATTCAAGCACTTATTATTTGAATTATTTCTAATCAAATTCCAAAAACAAAAACAAGATTTTGAAAATTACTTTTTTAGTTTTCAAAACTTTGACTTGGTTTTCTAAAACATGGGAACAGTATAGATAACAAAACAAAAAAACTTATAGGTGAAAGTAGTGTTTTTAAACTTAATTTTCAAAAACTAAAATCTAAAAATCAAATCGCTATCAAACTGAGTTTTGGTTTTTGGTTTTTCAAAATTATGCTTGTTTTCATCCAATTTCCATATAATGGACTTAATTTTTGTTACGAACACATTTGAATTTTTAGCCAAATTTCAAAAACAAAAACAAGCGTTTTTTAAAATTCATTTTCTAGTTTTCAAAATCGACTTGTTTGGAAGCTTATAGGTGGAAGTAGTATTCATAAGCATAGTTTTAAAAAATAAAACATCAAATGATTATTAAACAGAGCCTAAACACTACATTCCAAACCTATTCAAAACATGATTGGAATGAAAACGAATTTAATTTTCAACCTGCATCAAACGATTATGTGATGGCCATGTTTTCCATTTTAGGATAGAGAAAGAAAGATATAGTTTAGATCAAATTGACCTTGTAATATTATTATTTAAAGTTGGTTGTTTATTGGATTTGTTGATTTTCTAGGGGAAGGAAGAAAGTGCGTTGGCCGACCGTACTCCTCCTCCTCCGCCGCCGAGCAACGGCGGCGGTGGTCAGACCAACTGATCACCGCCCGGCGCTCTTTTATGGTCTAATATACAAGTCCCTTCTACACCCACTTATTATACGCCGGTGGATTAATGTAAAACTAGTTTTATAGGAAAATTTAACCAATTGTTATTATTTTCTGAGCTAATTTCTGCGGAGCCATATGGAAGTCAACTAGTGCTGATCACATAGAGAGAGAAATTGCACTTGTGTTTGTGGGAAAGTTAAATTTAGGTACAACTGATCTCATAGTTGATTTTTTTTTTTTTTTTTATGCAAAAACTTTGATGTTTATTATTCTATATTAATTTATAGACTTTTATATGGTC

mRNA sequence

ATGGGTGTAGTAATCGTTGACGAGACCAGACGTGTAGTCCCTATAGTGAGAGGAGTGGCGATTGGATTTGTCACTGAGCCGAAGAGGATGATGAAGAGAGGTTCAAAGCTTTTGAAGAATAAAGAAAGAATGGAGGATTCAAATGAAAACAACGACGTTGTTGCTCACTCGCCTTTTCTTTTATCCATCTTCAACTTCTTCTTGCGAATTTTGATGTCCATTTTGAAGTTTCTAACTGTGTATGTTTACCGTCCGATACCGTTGTCATCCAAAGATTCTTACGTCGATGAATCACATCCGCCGCCCACAGCGGTTGACCCACCTGTTGATCAATTGGTAAGCTTCTTCGGGGGTGCACCGAGGTACGCTCGCCGCAAGGGGAAGGAAGAAAGTGCGTTGGCCGACCGTACTCCTCCTCCTCCGCCGCCGAGCAACGGCGGCGGTGGTCAGACCAACTGA

Coding sequence (CDS)

ATGGGTGTAGTAATCGTTGACGAGACCAGACGTGTAGTCCCTATAGTGAGAGGAGTGGCGATTGGATTTGTCACTGAGCCGAAGAGGATGATGAAGAGAGGTTCAAAGCTTTTGAAGAATAAAGAAAGAATGGAGGATTCAAATGAAAACAACGACGTTGTTGCTCACTCGCCTTTTCTTTTATCCATCTTCAACTTCTTCTTGCGAATTTTGATGTCCATTTTGAAGTTTCTAACTGTGTATGTTTACCGTCCGATACCGTTGTCATCCAAAGATTCTTACGTCGATGAATCACATCCGCCGCCCACAGCGGTTGACCCACCTGTTGATCAATTGGTAAGCTTCTTCGGGGGTGCACCGAGGTACGCTCGCCGCAAGGGGAAGGAAGAAAGTGCGTTGGCCGACCGTACTCCTCCTCCTCCGCCGCCGAGCAACGGCGGCGGTGGTCAGACCAACTGA

Protein sequence

MGVVIVDETRRVVPIVRGVAIGFVTEPKRMMKRGSKLLKNKERMEDSNENNDVVAHSPFLLSIFNFFLRILMSILKFLTVYVYRPIPLSSKDSYVDESHPPPTAVDPPVDQLVSFFGGAPRYARRKGKEESALADRTPPPPPPSNGGGGQTN
Homology
[Close]
BLAST of Spg004842 vs. NCBI nr
Match: XP_008464347.1 (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 uncharacterized protein E6C27_scaffold121G001200 [Cucumis melo var. makuwa] >TYK18469.1 uncharacterized protein E5676_scaffold607G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-19
Identity = 68/129 (52.71%), Postives = 80/129 (62.02%), Query Frame = 0 

Query: 31  MKRGSKLLKNKERMEDSNEN----NDVVAHS--PFLLSIFNFFLRILMSILKFLTVYVYR 90
           MKRGSKLLKN E +E+SNEN    ND V H   PF LSIFN   +I M+  +FL   V+R
Sbjct: 1   MKRGSKLLKNIEEIENSNENTKELNDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHR 60

Query: 91  PIPLSSKDSYVDESHPPPTAVDPPVDQLVSFFGGAPRYARRKGKEESALADRT-PPPPPP 150
           PI  SS+DSY  +S PPPT VDPP++                G+EE   A R  PPPPPP
Sbjct: 61  PILSSSEDSYPVDSQPPPTTVDPPIED--------------PGEEEREFARRNPPPPPPP 115

Query: 151 SNGGGGQTN 153
           SNGGGG+TN
Sbjct: 121 SNGGGGRTN 115

[Close]
BLAST of Spg004842 vs. NCBI nr
Match: XP_031743811.1 (uncharacterized protein LOC116404676 [Cucumis sativus] >KAE8646593.1 hypothetical protein Csa_005180 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-14
Identity = 59/130 (45.38%), Postives = 72/130 (55.38%), Query Frame = 0 

Query: 31  MKRGSKLLKNKERMEDSNEN-------NDVVAHSPFLLSIFNFFLRILMSILKFLTVYVY 90
           MKRGS L KN E++E+SNEN       +DV  H PF LSIF    +I M+  +FL   V 
Sbjct: 1   MKRGSMLSKNIEKIENSNENTKKMNDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVP 60

Query: 91  RPIPLSSKDSYVDESHPPPTAVDPPVDQLVSFFGGAPRYARRKGKEESALADRT-PPPPP 150
                SS+DSY  + HPPP   DPP++                G+EE   A R  PPPPP
Sbjct: 61  SSTLPSSEDSYPVDPHPPPKTDDPPIE--------------NSGEEEREFARRNPPPPPP 116

Query: 151 PSNGGGGQTN 153
           PSNGGGG+TN
Sbjct: 121 PSNGGGGRTN 116

[Close]
BLAST of Spg004842 vs. NCBI nr
Match: KAG6592220.1 (hypothetical protein SDJN03_14566, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-13
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0 

Query: 57  SPFLLSIFNFFLRILMSILKFLTVYVYRPIPLSSKDSYVDESHPPPTAVDPPVDQLVSFF 116
           +PF L IFNF  +I +SI +FL  +V   I   S+++++D SHP PT VDPPVD+     
Sbjct: 7   TPFFLLIFNFLFQITISISRFLGFHV-NTISALSENTHLDASHPSPTDVDPPVDE----- 66

Query: 117 GGAPRYARRKGKEESALADRTPPPPPPSNGGGGQTN 153
                     G+EE+ALA RTPPPPPPSNGGGGQTN
Sbjct: 67  ---------SGQEETALAKRTPPPPPPSNGGGGQTN 87

[Close]
BLAST of Spg004842 vs. NCBI nr
Match: XP_038886557.1 (uncharacterized protein LOC120076731 [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-06
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 0 

Query: 39  KNKERMEDSNENNDVVAHSPFLLSIFNFFLRILMSILKFLTVY----VYRPIPLSSKDSY 98
           K+K++++D +E  D+ +H P  L I +  L+  ++IL+FL        YRP P S +D Y
Sbjct: 6   KSKKQVDDDDE-TDLHSHCPIFLIICDSILQAFIAILRFLGFNHNGPPYRPAPSSPEDCY 65

Query: 99  VDESHPPPTAVDPPVDQLVSFFGGAPRYARRKGKEESALADRTPPPPPPSNGGGGQTN 153
            D S PP TAV+PP D+                +E        PPPPP S GGGGQT+
Sbjct: 66  TDGSDPPSTAVNPPDDE--------------SEEESEYYRPHVPPPPPWSTGGGGQTD 108

[Close]
BLAST of Spg004842 vs. NCBI nr
Match: KAG6585921.1 (hypothetical protein SDJN03_18654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-06
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 0 

Query: 73  SILKFLTVYVYRPIPLSSKDSYVDESHPPPTAVDPPVDQLVSFFGGAPRYARRKGKEESA 132
           SI +FL  +V   I   S+D+++D SHPPP  V+PPVD              +  +E+S 
Sbjct: 16  SISRFLGFHV-NTISSPSEDTHLDGSHPPPMEVNPPVD--------------KSEQEKSV 75

Query: 133 LADRTPPPPPPSNGGGGQTN 153
           LA RTPPPPPPSNG  GQTN
Sbjct: 76  LAKRTPPPPPPSNGDSGQTN 80

[Close]
BLAST of Spg004842 vs. ExPASy TrEMBL
Match: A0A5A7T6U0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00390 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.1e-20
Identity = 68/129 (52.71%), Postives = 80/129 (62.02%), Query Frame = 0 

Query: 31  MKRGSKLLKNKERMEDSNEN----NDVVAHS--PFLLSIFNFFLRILMSILKFLTVYVYR 90
           MKRGSKLLKN E +E+SNEN    ND V H   PF LSIFN   +I M+  +FL   V+R
Sbjct: 1   MKRGSKLLKNIEEIENSNENTKELNDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHR 60

Query: 91  PIPLSSKDSYVDESHPPPTAVDPPVDQLVSFFGGAPRYARRKGKEESALADRT-PPPPPP 150
           PI  SS+DSY  +S PPPT VDPP++                G+EE   A R  PPPPPP
Sbjct: 61  PILSSSEDSYPVDSQPPPTTVDPPIED--------------PGEEEREFARRNPPPPPPP 115

Query: 151 SNGGGGQTN 153
           SNGGGG+TN
Sbjct: 121 SNGGGGRTN 115

[Close]
BLAST of Spg004842 vs. ExPASy TrEMBL
Match: A0A1S3CMT1 (uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.1e-20
Identity = 68/129 (52.71%), Postives = 80/129 (62.02%), Query Frame = 0 

Query: 31  MKRGSKLLKNKERMEDSNEN----NDVVAHS--PFLLSIFNFFLRILMSILKFLTVYVYR 90
           MKRGSKLLKN E +E+SNEN    ND V H   PF LSIFN   +I M+  +FL   V+R
Sbjct: 1   MKRGSKLLKNIEEIENSNENTKELNDDVVHDHCPFFLSIFNLVFQITMAFYRFLGFRVHR 60

Query: 91  PIPLSSKDSYVDESHPPPTAVDPPVDQLVSFFGGAPRYARRKGKEESALADRT-PPPPPP 150
           PI  SS+DSY  +S PPPT VDPP++                G+EE   A R  PPPPPP
Sbjct: 61  PILSSSEDSYPVDSQPPPTTVDPPIED--------------PGEEEREFARRNPPPPPPP 115

Query: 151 SNGGGGQTN 153
           SNGGGG+TN
Sbjct: 121 SNGGGGRTN 115

[Close]
BLAST of Spg004842 vs. ExPASy TrEMBL
Match: A0A0A0K8Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020170 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.3e-10
Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = 0 

Query: 48  NENNDVVAHSPFLLSIFNFFLRILMSILKFLTVYVYRPIPLSSKDSYVDESHPPPTAVDP 107
           N+++DV  H PF LSIF    +I M+  +FL   V      SS+DSY  + HPPP   DP
Sbjct: 2   NDDDDVHDHCPFFLSIFKLVFQITMAFYRFLGFCVPSSTLPSSEDSYPVDPHPPPKTDDP 61

Query: 108 PVDQLVSFFGGAPRYARRKGKEESALADRT-PPPPPPSNGGGGQTN 153
           P++                G+EE   A R  PPPPPPSNGGGG+TN
Sbjct: 62  PIE--------------NSGEEEREFARRNPPPPPPPSNGGGGRTN 93

The following BLAST results are available for this feature:
BLAST of Spg004842 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464347.11.1e-1952.71PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 unc... [more]
XP_031743811.13.9e-1445.38uncharacterized protein LOC116404676 [Cucumis sativus] >KAE8646593.1 hypothetica... [more]
KAG6592220.13.3e-1352.08hypothetical protein SDJN03_14566, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038886557.13.9e-0637.29uncharacterized protein LOC120076731 [Benincasa hispida][more]
KAG6585921.13.9e-0647.50hypothetical protein SDJN03_18654, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg004842 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004842 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T6U05.1e-2052.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CMT15.1e-2052.71uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=... [more]
A0A0A0K8Z66.3e-1043.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020170 PE=4 SV=1[more]
BLAST of Spg004842 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004842.1Spg004842.1mRNA