Spg004588 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004588
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	WD repeat-containing protein 20-like
Location	scaffold9: 8437025 .. 8439216 (+)
RNA-Seq Expression	Spg004588
Synteny	Spg004588

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGATGAGTTCCTTCCCCATCCTCCTTTTCGGGACCAAGGAAATTTCTTATGGCAAGTTGGGATTTGTGCTATCATTTGGGGTTTGTGGGGGGAGAGAAATAACAGAATTTTTAGAGGGAAGGAGAGGAATGCGGAGGATGTTTGGGACATCATTAAATATTCTGTCTCTTTATGGTCGTTGGTGACACGTTTATTTTGTAATTATCCTTTAGGTCTTATTTTGTTAGCAGATTGGCGTCCCTTTATCTAAGGGGATTTCCTTTTGGGGCTTGGTTTTTTTGTATGCCCTTGTATTCTTTCATTTTTTCTCAATGAAAGGTTGGTTCATTATCAAAAAAAAAAAAAAAAAACTTAAATTTGGTTGATAACATATTGGACTTTGAAGTGTATCTCCAAATATCTATCAATCTTAGAAGTAGGTGGTTTGAAGTGTATCTCCAAATATCTATCAATCTTAGAAGTTGGGTTTGGAGTTGTAATACGTTTTGTATTGAAATTTTCTTTACTAATTTATAGAAAAATGAAACTTTGAATTGGTTTATATCTATAAATGATATATATTTTTCTTGTAATTTGCATTTTAATTCTTATTGACTGCATTGATCTCACTTAGATGCAGAATATCATTGAAAAGATTGAAGACTTAGCTCCACTTGTGAGAACCAGCAACTCTATCTCCTATAATCTCCCGGACGTGGAAGTTGCGCTTTTGGTTTTTCTGTTGGTTTTGAGCAACTCCCTTTTTCCACTTTGGAAGAAGTTGATTTGGTTCCACTAGTTTGTTTGTTTACTTTGTTTTTTGATTCAGTTTTTTTTTTTTCTTCTTTTTAGCAAGTTGTATAGCTGCTCCTTGGAAAAGACCAGGCTCCAAAAATGAGGTATGTTGGACTGTTTTTGCCATGTAGTTTTATTTTATCTATGAGTATATATGGTTCATAATCTCTAGTATTATGCATTTTTCTTGGCTTATTATTGCCATCCAAAACTTATTTTGTTGGCTTTTTGGCATTCCTTTTTGGCTATTACTGCATTTAGCTCATCTTGTTTGTTTTACAATATTGTTTTATTACATTCAATACAGTTTATTATTCGTTATTTTATTTCAGCTTAATCTGTTAGGTTTCTTCACTTTTTCTTCAATGTTTCTCACTCATTTTAACTTCCTGTGCTTTTTTGCATGTTATATTTGTTAGAAAATGAGACTCACACTGTTTTTTGATTCGATGTACTCAATCCATTAATTAAGCTCCATTTCTTCCTTCTTCTCTTCTTATTTTGCAATGTCTTTACTGGAATGTTGAAGTGCTCTTTGTTGAATAGTTTGTCATTTATAAGCAATTAGAATGTCTTGTTTTATTGTCTCAAATTCAGGGAATCTACTGGTTGTCTATTTGCTCCTCTCGATCCTTTTTCGAGTGTACCTATCGTTTTTGTACTGTTAAGTGGCATCCATTGAACGAGTTTTGCAGATTATGTTGCTTGATATTACATTTTGACATACAAATTTTGGTTGTGGTGGTCTTGTGTTGGCAATTGGTTTGTAGAAAAAATTGATCCATTTGTTTTCTTTAACTTTTCTGTAGTTGACTTGAGTGGGATTTGTTACCTAGAGTAAATAGATTTGTAGCAATGTGATTAGAGCAGGACTTAAAGCAGGATTTCAACTATGCAAATTGTTTTGTCTTGTTGTTATCTGGTATGTTTCAGAATACATGGGCTCAAAACAAAACTTTAGCTCAGAGGAAGATGATCCTGAGTATGTCTCATTCAGGTAACCTTAATTCACCAGATAAGGTAACCAACGTGTTACAGTATGGAATTTGTGTTGTTCTAATTGATCAGTGTGTGTTGGGTTTGTAAGTTGTCTTTGTGTTTTTCTCAGGATCCTATTAAGTCTTTGCATTTTAGCAATTCAAATCCTATCTGCCATGCGTTTGATCTTGAAGCTAAGGATGGTCATGACCTACTTATTGGATTCAATTCTGGAGATGGTAAATATGTTTTTCTCTATATATGATTTGTGTTGGTTGTTTCTGGATGAAACTGTGTTTGAATTTCTCATTCTCTATGCATACTGTAGTCTACTTGGTTTCTTTAAGACAACAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAACAAAGAGGGCACTGTCAATAACGGGCAAGAGCATTAG

mRNA sequence

ATGATCGATGAGTTCCTTCCCCATCCTCCTTTTCGGGACCAAGGAAATTTCTTATGGCAAGTTGGGATTTGTGCTATCATTTGGGGTTTGTGGGGGGAGAGAAATAACAGAATTTTTAGAGGGAAGGAGAGGAATGCGGAGGATGTTTGGGACATCATTAAATATTCTAATATCATTGAAAAGATTGAAGACTTAGCTCCACTTGTGAGAACCAGCAACTCTATCTCCTATAATCTCCCGGACGTGGAAGTTGCGCTTTTGGTTTTTCTGTTGAATACATGGGCTCAAAACAAAACTTTAGCTCAGAGGAAGATGATCCTGAGTATGTCTCATTCAGGTAACCTTAATTCACCAGATAAGGATCCTATTAAGTCTTTGCATTTTAGCAATTCAAATCCTATCTGCCATGCGTTTGATCTTGAAGCTAAGGATGGTCATGACCTACTTATTGGATTCAATTCTGGAGATGTCTACTTGGTTTCTTTAAGACAACAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAACAAAGAGGGCACTGTCAATAACGGGCAAGAGCATTAG

Coding sequence (CDS)

ATGATCGATGAGTTCCTTCCCCATCCTCCTTTTCGGGACCAAGGAAATTTCTTATGGCAAGTTGGGATTTGTGCTATCATTTGGGGTTTGTGGGGGGAGAGAAATAACAGAATTTTTAGAGGGAAGGAGAGGAATGCGGAGGATGTTTGGGACATCATTAAATATTCTAATATCATTGAAAAGATTGAAGACTTAGCTCCACTTGTGAGAACCAGCAACTCTATCTCCTATAATCTCCCGGACGTGGAAGTTGCGCTTTTGGTTTTTCTGTTGAATACATGGGCTCAAAACAAAACTTTAGCTCAGAGGAAGATGATCCTGAGTATGTCTCATTCAGGTAACCTTAATTCACCAGATAAGGATCCTATTAAGTCTTTGCATTTTAGCAATTCAAATCCTATCTGCCATGCGTTTGATCTTGAAGCTAAGGATGGTCATGACCTACTTATTGGATTCAATTCTGGAGATGTCTACTTGGTTTCTTTAAGACAACAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAACAAAGAGGGCACTGTCAATAACGGGCAAGAGCATTAG

Protein sequence

MIDEFLPHPPFRDQGNFLWQVGICAIIWGLWGERNNRIFRGKERNAEDVWDIIKYSNIIEKIEDLAPLVRTSNSISYNLPDVEVALLVFLLNTWAQNKTLAQRKMILSMSHSGNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQEH

Homology

[Close]

BLAST of Spg004588 vs. NCBI nr
Match: XP_022997935.1 (WD repeat-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-32
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEGTVNN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Spg004588 vs. NCBI nr
Match: XP_023523294.1 (WD repeat-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-32
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEGTVNN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Spg004588 vs. NCBI nr
Match: KAG6607184.1 (hypothetical protein SDJN03_00526, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-32
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEGTVNN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Spg004588 vs. NCBI nr
Match: XP_022948722.1 (WD repeat-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-32
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEGTVNN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Spg004588 vs. NCBI nr
Match: XP_022156951.1 (dystrophia myotonica WD repeat-containing protein-like [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 4.0e-32
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY +SLRQQLQDVGKK
Sbjct: 177 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSISLRQQLQDVGKK 236

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEGTVNN +
Sbjct: 237 LVGAQHYNKEGTVNNSR 253

[Close]

BLAST of Spg004588 vs. ExPASy TrEMBL
Match: A0A6J1KBA4 (WD repeat-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111492734 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEGTVNN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Spg004588 vs. ExPASy TrEMBL
Match: A0A6J1GA15 (WD repeat-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111452306 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEGTVNN +
Sbjct: 241 LVGAQHYNKEGTVNNSR 257

[Close]

BLAST of Spg004588 vs. ExPASy TrEMBL
Match: A0A6J1DWI2 (dystrophia myotonica WD repeat-containing protein-like OS=Momordica charantia OX=3673 GN=LOC111023781 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY +SLRQQLQDVGKK
Sbjct: 177 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSISLRQQLQDVGKK 236

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEGTVNN +
Sbjct: 237 LVGAQHYNKEGTVNNSR 253

[Close]

BLAST of Spg004588 vs. ExPASy TrEMBL
Match: A0A5A7UNI0 (Dystrophia myotonica WD repeat-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00080 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.3e-32
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEG+VNN +
Sbjct: 241 LVGAQHYNKEGSVNNSR 257

[Close]

BLAST of Spg004588 vs. ExPASy TrEMBL
Match: A0A6J1HZM7 (dystrophia myotonica WD repeat-containing protein-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469558 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.3e-32
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 113 GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKK 172
           G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 173 LVGAQHYNKEGTVNNGQ 190
           LVGAQHYNKEG+VNN +
Sbjct: 241 LVGAQHYNKEGSVNNSR 257

[Close]

BLAST of Spg004588 vs. TAIR 10
Match: AT3G53390.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 131.3 bits (329), Expect = 8.0e-31
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 114 NLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKL 173
           +LNS +KDP+KS+HFSNSNP+CHAFD +AKDGHDLLIG NSGDVY VSLRQQLQDV KKL
Sbjct: 161 DLNSQEKDPVKSIHFSNSNPMCHAFDPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVSKKL 220

Query: 174 VGAQHYNKEGTVNNGQ 190
           VGA HYNK+G+VNN +
Sbjct: 221 VGALHYNKDGSVNNSR 236

[Close]

BLAST of Spg004588 vs. TAIR 10
Match: AT2G37160.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-30
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 114 NLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKL 173
           +LNS DKDP+KS+H SNSNP+CHAF  +AKDGHDLLIG NSGDVY VSLRQQLQDVGKKL
Sbjct: 161 DLNSQDKDPVKSIHISNSNPMCHAFHPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVGKKL 220

Query: 174 VGAQHYNKEGTVNNGQ 190
           V AQHYNK+G+VNN +
Sbjct: 221 VSAQHYNKDGSVNNSR 236

[Close]

BLAST of Spg004588 vs. TAIR 10
Match: AT2G37160.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-30
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 114 NLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKL 173
           +LNS DKDP+KS+H SNSNP+CHAF  +AKDGHDLLIG NSGDVY VSLRQQLQDVGKKL
Sbjct: 190 DLNSQDKDPVKSIHISNSNPMCHAFHPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVGKKL 249

Query: 174 VGAQHYNKEGTVNNGQ 190
           V AQHYNK+G+VNN +
Sbjct: 250 VSAQHYNKDGSVNNSR 265

The following BLAST results are available for this feature:

BLAST of Spg004588 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997935.1	3.1e-32	92.21	WD repeat-containing protein 20-like [Cucurbita maxima]	[more]
XP_023523294.1	3.1e-32	92.21	WD repeat-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
KAG6607184.1	3.1e-32	92.21	hypothetical protein SDJN03_00526, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948722.1	3.1e-32	92.21	WD repeat-containing protein 20-like [Cucurbita moschata]	[more]
XP_022156951.1	4.0e-32	90.91	dystrophia myotonica WD repeat-containing protein-like [Momordica charantia]	[more]

BLAST of Spg004588 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBA4	1.5e-32	92.21	WD repeat-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111492734...	[more]
A0A6J1GA15	1.5e-32	92.21	WD repeat-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC1114523...	[more]
A0A6J1DWI2	1.9e-32	90.91	dystrophia myotonica WD repeat-containing protein-like OS=Momordica charantia OX...	[more]
A0A5A7UNI0	4.3e-32	90.91	Dystrophia myotonica WD repeat-containing protein-like OS=Cucumis melo var. maku...	[more]
A0A6J1HZM7	4.3e-32	90.91	dystrophia myotonica WD repeat-containing protein-like isoform X2 OS=Cucurbita m...	[more]

BLAST of Spg004588 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53390.1	8.0e-31	78.95	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G37160.1	1.4e-30	78.95	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G37160.2	1.4e-30	78.95	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 91..190 e-value: 8.6E-9 score: 37.1
None	No IPR available	PANTHER	PTHR14107:SF23	WD REPEAT-CONTAINING PROTEIN 20-LIKE	coord: 113..186
None	No IPR available	PANTHER	PTHR14107	WD REPEAT PROTEIN	coord: 113..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004588.1	Spg004588.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding