Spg004553 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004553
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 10546749 .. 10549766 (+)
RNA-Seq ExpressionSpg004553
SyntenySpg004553
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCAAGGAGACTCCCACCACCGCATAACTTATTCTCAGCCCATTTTCCCATCATTTCTCATCATTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTAAAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGGTGAGATTTGATTTTCTTGAAAGTTAGTTCATTTTCTAACAAAATTCATGAATGAATCTTGAGCAAAATCGTATGAGAAGTTAATGGATTTTTGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTTGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGTATGGCTGGCAAGCTTATTCAATTGCCTACAACTTTCATGAAGATTTCGTGAGCCAAAAATGACTTTAAGTAGGGTTAATTTCAGGAGTTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTAGGAATCTCATTTTAATTTCTTCAGGTAAGTTGTAGAGTGTTCGCAAGTGAAGAGTTTTATGTGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTCAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAATGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTTCATGTTTAGATGTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATAAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAACTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTTCAATTTTTCACGAGCAAACTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGATATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTCGGCGTGCCCTACACAACGTAGATCGGTCATGTTAATTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGTGAGATATTTTAGAAAGCCTTTTTCATTACACGTTTATGTTAAACGCTTGAATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTCCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATGTGTTTTTGGTTGTGACATCTATATCAGGTTATTATCCGAACCAAGTTATGTTAGGGCGGCACGTCGTGTTTGTTGGAAGTTTTTTTTCAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCATCGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCATGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCAAGAGGGGGTGTGACACGCCTGACGCTCAACTCCCTCTCGTGTGCGTGGCCTTTGTTCATTTGGCTGGTATCTCTTATTTTCCCTTCATTTTTCCATTTTCCTTCCTCCCAAATATCTCCTAAATTTCATCATTTACAACCCATATTCAATTTGAATTCTTTCCTAATTTCATTTTCTTTCAAATCCCCATTTTATTCTCAAAATCTCCAAATTCCAATCTTTCTAATTTCATTCTTAATTTCAAAATCCTTTCCTTTTCTATTAAAATTAAATCTCCATCCTCCATTTTAAAATATATCCAACGGCCAAAATTTCATCTCCCTGCCTATAAATTTGAGTCGATTTTCTCTTTTCATTAACACACTCAAGCTATCAAAGTCCTAAGCTCTCAAATCTCCCTAGTCTCAATCATTGTCCAGAAATCCTCCCTTGCTCTTAAATTGACCTAGTGAAATTTTGTGAGGTTATATTAGAGTGAGTGCTCAACTTTGTGTAATTAGTCTTCAAGAGGCAAATTTTCGTGAGGTTTCTTCTTTATTTTTTTGGAATTGTAATAGGGGTGATTGCAGCAGTAGAAAAAAGGAAAATCCTCAATTGCAAGCGTGCCTCCACTTTTTGAGGATTGCAATTATGGAAAAAAAAATTCAGCCCAGTTGATAACTCTCCAAAAGGGAGTTATTTAGGTCTTAGTTCTATAGTGTTTTGTGTGTCATTTGTACTAAATAGGGTTGCTTTTAGATGAATATTATATGTTTTAACCCATTTGGAAGAATGAATGCTTTGGAAGTTATTTTGTGCAGAATATAATGCTGAGCGACTTGAGGGAGCAAAATCTGTGATCCAGCAAAGCAGGGAACAAAACTGCCACATAACAGCTCGTAATCCATTTTAA

mRNA sequence

ATGGTTTCAAGGAGACTCCCACCACCGCATAACTTATTCTCAGCCCATTTTCCCATCATTTCTCATCATTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTAAAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTAG

Coding sequence (CDS)

ATGGTTTCAAGGAGACTCCCACCACCGCATAACTTATTCTCAGCCCATTTTCCCATCATTTCTCATCATTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTAAAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTAG

Protein sequence

MVSRRLPPPHNLFSAHFPIISHHFPPKLSEHFKERVKEEEEEEFRGLKVEEDKKSSCKASHSRIWVQN
Homology
[Close]
BLAST of Spg004553 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 12  LFSAHFPIISHHFPPKLSEHFKERVKEEEEEEFRGLKVEEDKKSSCKASHSRIW 66
           LF  +F    HHFP KLSEHF+ERVK EEEEEFRGL++++  KSSCKA+H RIW
Sbjct: 56  LFQPNFISFLHHFPSKLSEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIW 108

[Close]
BLAST of Spg004553 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.1e-09
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 12  LFSAHFPIISHHFPPKLSEHFKERVKEEEEEEFRGLKVEEDKKSSCKASHSRIW 66
           LF  +F    HHFP KLSEHF+ERVK EEEEEFRGL++++  KSSCKA+H RIW
Sbjct: 56  LFQPNFISFLHHFPSKLSEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIW 108

The following BLAST results are available for this feature:
BLAST of Spg004553 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08801.11.9e-0866.67hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
BLAST of Spg004553 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004553 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CAC69.1e-0966.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg004553 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004553.1Spg004553.1mRNA