Spg004535 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004535
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA-binding protein 24 isoform X1
Location	scaffold9: 10272168 .. 10276211 (-)
RNA-Seq Expression	Spg004535
Synteny	Spg004535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCCTAACTTTTGCTTTCTCTTCGTTCCCTCCCTCCCTTCCAGTCCCCATTTCACTTTCTCTTTTGTTTTCATCTCTGACCTAATTGTCTGTCTCTCTTCTCTCTTCTCTCTCCCCTCACCCATCCTCTTCCTCTCCTCCGATCTAACCTCAAACAAAAGAAACCTCCGTAGATTTAGACAGAGAGTCCATTAACAAGATTATTCAACAACACTGATCCAAGAATCTCTCATTTCCAAACCAAACATGACTCCAGCTAACTTGGCAGGCCAGTTTGGGGACACCACTTACACCAAGGTCTTCGTCGGCGGCTTGGCTTGGGAGACCCACAAAGACACCATGAAGAAATACTTCGAACAGTTCGGCGACATCTTGGAAGCCGTCGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTACGTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTTTCTCGTCTCTCCAAATCAATGGGATTTATTTTAATTTAATTTCCTTCTCGTTTCAGGTCACTTTCCGCGAACCGGAGGCCGCGATGAGGGCTTGCGTCGATGCTGCTCCGGTCATCGACGGCCGGAGGGCCAACTGCAATCTCGCTTCTCTCGGCGTTCAGAGATCTAAACCCTCCACGCCCAAACACGGTATTAACTCAGATCTGCCAAATATTTGATTAATAGGGAAAACCCATGAAATATATATTTGATCGTTTAATTGTTGGGTTTGTGGGAAGTAAAGTTTAGATCATGTCGTCCCAAGTGTTTGATTTTGTGTGTTTGATGTTTGAAAATGATTTTTTGTTAAAGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGGGGAGGTGGTGGTGGTGGAAGGAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCAGCAAGGGATCCCTTACAATCTCTATGGGTAAGTTTTATTTCTTTCTTTTTTTTACTTTCTCTCCTAATATATATAATGTCTCTGTATATCATCATAACATAAGATGTTATGTTATATATATTTTCTCTCTCTAGAACGTGCCTTGCCAACTCATCCCTTCACTTTACTTTATTACAAACAATAAAGCTTTCCCTTCTTAATCACTCTAAATTCATTCATTTCCTACAAGACTCGTTTTCATCTCATGCATTAAACTCGATCGCTTCTTCTTTTAATTTACTGCATGCATGCATTGCACGTATCTCTACTCATTAATTAAATTTCTTGTTAATTAATTTATTATTATTGCTGTTCTTTTAGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGGTTTGTACAAACTTCTCTCTCTGTTTGAATTTCTTTCATCATTCAATTCATAAAGAACAGTTGAATGGAATCATTATTAGGAGAAAAAAGAAAAAGGGTTTTGACGAAGAATGATGGTAAAATTCTCTGATATTCCTTGCGGTGGAGAGGAGGAGGAGGAGTAGGCTATATTTGGAAGTGAATTGAAATAAAAGAATCTGGACATTGTCTGGTCAAACTGTTGAAAAGTGAAAGTTAAGAAAACCCAATCTGGTGTTCCTTCTCTTGTCGTTTTATCCGACAATTTTTGTTTCTAACATTTAATATTGCAACAGTAAATCACTTTGTTACAGTTTTTGTTATTACACGTTCTTTCATGCACGTAATCATGAAAATGCCGACTGCAACCCGACCACTTTCGAATTGAACAAAAACACATCTCTGATTCAGAATGCGACATCGTCAAGCAAACCATATTGTAAAATAAAAATTATGTTTATTATTATTATTTTTATACGTTGGTTTTTTAATTTGTAGCAGAGCTACTACAATGTGTACGGCGGGGCAACTGCACAGTACCCTATGTACGGTACCGGACCCGGCGGCATAATGAGCGGTGCGGCGGCGGCGGCAGCGGCGTTCTACCCGTATTTCCAATTCGGAGAAGGAAGCGGCGGAGGAGCTAACGGCTTCAGTGCCGGTTCCGGGCAGCAGGGGTATGGGGTTCAGTACCCGCACCATCTATTTCAGTACTCGGCCGCCATTAATTCAACTGCGACGACGTTCCCTCAGCACTATGCTGGTCCTCCCATGTCTCTGCCACCCACGCCTCCCACTTTGCCATCAGGTTTGTGCTTTTTTTAGTTGTCTGATTATAAGGGAATAAATTGAAAGTATTTAAAGAGATAAATGTATTGAGGTGATTGTGATTGTGTTATGGGAGTGTGGAAGACGTACTAATATCTTTGACAGTGTTTTTTGCTGTCCCACAGGCGTGACCATGGCTCTTCCAGCACCAATCCCACATCGCTAAGAGAGACACAAGACAATCCCACATCGTCAAAATTTCCTCCAAAATTTGCTTCTCGAAGTATCAAAAAAGTCACACCTTCGGCCTAACCATGGTTCCATTTCTCTCCCTCTCTCGCACTCTAACTCCAATCTCATGCCATTAGCATACAGTGTTTGGAATTCACAAATGCTTTTGGCCAAAGCAGCACCTCGTCGGGGCTGCACAAATCTCACCTCCAAAGTTGGAGCAAAATCATCATGCATTTTCCTTTCCTTTCCCATTTTGCACACATAATTTTCCTTTCCAAACGGTTCCTTTTATCAAGAGAACCAAAAGCACTTTTCGTGATGGGGTGAACAAAAAACCAACCGAGGCCATCAAGGGAATTGGCCCCAAGTTGGCGAAATCTGCACATAGCGTCGTTTTTTAATGTAAGCTATAAAGCTCTGATATCCGATCCCCGGCCCCCCCTTTTGTTGTAACTCGATGAGCCTAGGAAAGGCTCTAAGGATATAACAACAAACACTTTTCGAAAAAACACTTGTTGGGTTTGCAAAAAAAAATGAAAAAAAAAAAAATCTGTACATTTCATTCTAAACACAGCACACCCTTTTCTTCCATCACTTTGAAAAACTCAAGTTTTGGACTGAAAAAAGCTAATGTTTTTCATCGTCATCTGTAATTAAATTTCAATTAGGAGTAATTAGAAGAAAAAGTTTCGAAGAATCGGTGGGTCGTCAAGGGTCGCCCCACCTCTTTCTCGAACTTTTTAATCTTTTAATTAATTTTTCCTCGATCTCTAGGCTGTTTTAGAACTAGTGGGTAGATTTTTCTTTTTTGTTTTACAAATTAATTTAGAATTAGTTTGGTCTAATCAACCAACCAGCTTGACATATTCCCCTTGGGCTAGGGGAGTATAGTACTAAACCCTTTTATTAATCAACTCTTAAGCACATTAGTTTCTTGTAATTAAAATTCACAAACAATCGTGGCTGAACTTTGGGAGTTGCAGCCTCGTTTTTGGTAAACCAAAGCACAAATATTGCTATTGGTTTAACATTTTTTTTTTTTGGTGCATTTAGGTCCCATAATTAGAAATTTAGGATAGGTTTAAGCATCCATCATTTTGAGAGTGTCCATGAATGGCAAATGGAGGTCTCAAAATAAGCATTTTGCATGTGAGCCCTTGGGAGATATTTGGGTTCCCTTTGGCTTCTTCTTCACTAACCCTACCAACCAACCATGGTTAGGACTTAGGTCAACTTCATTTCTCTCTCTCTCTCTCTTCACCATGTTGCCTTTCTTAATTTCTTCTTCAGTATTCCCATTTTACCCTCTTCCTATCATCCTATCATCTCCCTTGGGAGATATTTTCTCCTTTCTTCTTTTTTTATGTGTCTGTGTGTTCAAGGGCTTTCTCTCTTCCATGGAGTTGGTGGACCTTGGAAACACTGTTTTTAATTAATTATGTCTGTAAAACAAGCAAGAGCCTTTTCTTTTCTTCTTCCTTCTCTCTCTTTTCTCTTTCTTCATGTCTTTAATTTTATGGTTTGTAATGTAATTAGAACGCTCTACTACCCTTTCCTTTTCATTATCAGAACTTCTACTAAGATTCAGTTCTTCACCAGCTCTGCTCTTTTGCAGCTGCTTGAAGAATAACCCTACGTACCTCAATATTAATTGTT

mRNA sequence

ATGACTCCAGCTAACTTGGCAGGCCAGTTTGGGGACACCACTTACACCAAGGTCTTCGTCGGCGGCTTGGCTTGGGAGACCCACAAAGACACCATGAAGAAATACTTCGAACAGTTCGGCGACATCTTGGAAGCCGTCGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTCACTTTCCGCGAACCGGAGGCCGCGATGAGGGCTTGCGTCGATGCTGCTCCGGTCATCGACGGCCGGAGGGCCAACTGCAATCTCGCTTCTCTCGGCGTTCAGAGATCTAAACCCTCCACGCCCAAACACGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGGGGAGGTGGTGGTGGTGGAAGGAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCAGCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGCAGAGCTACTACAATGTGTACGGCGGGGCAACTGCACAGTACCCTATGTACGGTACCGGACCCGGCGGCATAATGAGCGGTGCGGCGGCGGCGGCAGCGGCGTTCTACCCGTATTTCCAATTCGGAGAAGGAAGCGGCGGAGGAGCTAACGGCTTCAGTGCCGGTTCCGGGCAGCAGGGGTATGGGGTTCAGTACCCGCACCATCTATTTCAGTACTCGGCCGCCATTAATTCAACTGCGACGACGTTCCCTCAGCACTATGCTGGTCCTCCCATGTCTCTGCCACCCACGCCTCCCACTTTGCCATCAGGCGTGACCATGGCTCTTCCAGCACCAATCCCACATCGCTAA

Coding sequence (CDS)

ATGACTCCAGCTAACTTGGCAGGCCAGTTTGGGGACACCACTTACACCAAGGTCTTCGTCGGCGGCTTGGCTTGGGAGACCCACAAAGACACCATGAAGAAATACTTCGAACAGTTCGGCGACATCTTGGAAGCCGTCGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTCACTTTCCGCGAACCGGAGGCCGCGATGAGGGCTTGCGTCGATGCTGCTCCGGTCATCGACGGCCGGAGGGCCAACTGCAATCTCGCTTCTCTCGGCGTTCAGAGATCTAAACCCTCCACGCCCAAACACGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGGGGAGGTGGTGGTGGTGGAAGGAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCAGCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGCAGAGCTACTACAATGTGTACGGCGGGGCAACTGCACAGTACCCTATGTACGGTACCGGACCCGGCGGCATAATGAGCGGTGCGGCGGCGGCGGCAGCGGCGTTCTACCCGTATTTCCAATTCGGAGAAGGAAGCGGCGGAGGAGCTAACGGCTTCAGTGCCGGTTCCGGGCAGCAGGGGTATGGGGTTCAGTACCCGCACCATCTATTTCAGTACTCGGCCGCCATTAATTCAACTGCGACGACGTTCCCTCAGCACTATGCTGGTCCTCCCATGTCTCTGCCACCCACGCCTCCCACTTTGCCATCAGGCGTGACCATGGCTCTTCCAGCACCAATCCCACATCGCTAA

Protein sequence

MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR

Homology

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BLAST of Spg004535 vs. NCBI nr
Match: XP_022930178.1 (RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-binding protein 38 isoform X1 [Cucurbita maxima])

HSP 1 Score: 542.3 bits (1396), Expect = 2.5e-150
Identity = 270/294 (91.84%), Postives = 277/294 (94.22%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT      G
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------G 120

Query: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQS 180
           GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPT S
Sbjct: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT-S 180

Query: 181 YYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYG 240
           YYNVYGGATAQYPMYGTGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGF+ GSGQQGYG
Sbjct: 181 YYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG 240

Query: 241 VQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           VQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 VQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Spg004535 vs. NCBI nr
Match: XP_022157230.1 (RNA-binding protein 24 isoform X1 [Momordica charantia])

HSP 1 Score: 541.6 bits (1394), Expect = 4.3e-150
Identity = 277/296 (93.58%), Postives = 282/296 (95.27%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPANLA QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLATQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT      G
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------G 120

Query: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQS 180
           GGGGRNFRVLSSFQ+GFGGNVGSAFHS  TFPHYAVQQGIPYNLYGYSSYSPDYTYPT S
Sbjct: 121 GGGGRNFRVLSSFQSGFGGNVGSAFHSAATFPHYAVQQGIPYNLYGYSSYSPDYTYPT-S 180

Query: 181 YYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS-GGGANGFSAGSGQQ-G 240
           YYNVYGGATAQYPMYGTGPGGIM+GAAAAAAAFYPYFQFGEGS GGG NGF+AGSGQQ G
Sbjct: 181 YYNVYGGATAQYPMYGTGPGGIMNGAAAAAAAFYPYFQFGEGSGGGGGNGFTAGSGQQGG 240

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           YGVQYPHHLFQYSAAINS+AT+FPQHYA PPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 YGVQYPHHLFQYSAAINSSATSFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of Spg004535 vs. NCBI nr
Match: XP_023535742.1 (RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 538.5 bits (1386), Expect = 3.6e-149
Identity = 268/294 (91.16%), Postives = 275/294 (93.54%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT       
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------- 120

Query: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQS 180
            GGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPT S
Sbjct: 121 -GGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT-S 180

Query: 181 YYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYG 240
           YYNVYGGATAQYPMYGTGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGF+ GSGQQGYG
Sbjct: 181 YYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG 240

Query: 241 VQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           VQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 VQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 285

[Close]

BLAST of Spg004535 vs. NCBI nr
Match: KAG6592286.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 538.1 bits (1385), Expect = 4.7e-149
Identity = 268/294 (91.16%), Postives = 275/294 (93.54%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT       
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------- 120

Query: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQS 180
           GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPT S
Sbjct: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT-S 180

Query: 181 YYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYG 240
           YYNVYGGATAQYPMY TGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGF+ GSGQQGYG
Sbjct: 181 YYNVYGGATAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG 240

Query: 241 VQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           VQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 VQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286

[Close]

BLAST of Spg004535 vs. NCBI nr
Match: XP_023523843.1 (probable RNA-binding protein ARP1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 537.3 bits (1383), Expect = 8.0e-149
Identity = 269/296 (90.88%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           M+PANL GQFGDTTYTK+FVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGGQFGDTTYTKLFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLG+QRSKPSTP H+KKKWEL GGGGGGG
Sbjct: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGLQRSKPSTPNHDKKKWELAGGGGGGG 120

Query: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQS 180
           GGGGRNFRVLS FQ+GFGGNVGSAFHSTPTFPHYAV QGIPYNLYGYSSYSPDY YPT S
Sbjct: 121 GGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT-S 180

Query: 181 YYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS--GGGANGFSAGSGQQG 240
           YYNVYGGATAQYPMY TGPGG+MSG    AAAFYPYFQFGEGS  GGGANGFSAGSGQQG
Sbjct: 181 YYNVYGGATAQYPMYSTGPGGLMSG----AAAFYPYFQFGEGSAGGGGANGFSAGSGQQG 240

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           YGVQYPHHLFQYSA INSTATTFPQHY GPPMSLPPTPPTLPSGVTMAL  PIPHR
Sbjct: 241 YGVQYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 291

[Close]

BLAST of Spg004535 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-25
Identity = 101/276 (36.59%), Postives = 132/276 (47.83%), Query Frame = 0


Query: 2   TPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGF 61
           T  N+ G FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62  VTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGG 121
           VTF++ +AA RAC D+ P+I+GRRANCNLASLG +  K  T    ++        G   G
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQ--------GPKNG 122

Query: 122 GGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQSY 181
                  V +  Q  +     +  H           Q +P+  YGY S    Y  P  ++
Sbjct: 123 NRATPPHVGNHSQWYYPSGFTNQQHQQQN------HQAVPF--YGYPS---AYVAPNMTF 182

Query: 182 YNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYGV 241
               G     Y M G          +     +Y +  +    GGG     A S    +  
Sbjct: 183 NQKVGYVGGTY-MNGYYAQMQPQPQSQPQPQYYHHHMY----GGGRVMVGAASPMVPFYT 242

Query: 242 QYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPP 278
            YP+H         S A  FPQ     P+S   TPP
Sbjct: 243 VYPYH--------QSQAIGFPQPSFSKPLSF-STPP 245

[Close]

BLAST of Spg004535 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 7.6e-25
Identity = 55/94 (58.51%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 3   PANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFV 62
           P  + G   DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFV
Sbjct: 21  PGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 80

Query: 63  TFREPEAAMRACVDAAPVIDGRRANCNLASLGVQ 97
           T  +  AA RAC D  P+IDGR+AN NLA LG +
Sbjct: 81  TMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 114

[Close]

BLAST of Spg004535 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 7.6e-25
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 3   PANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFV 62
           P+ + G   DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFV
Sbjct: 19  PSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78

Query: 63  TFREPEAAMRACVDAAPVIDGRRANCNLASLGVQ 97
           T  +  AA RAC D  P+IDGR+AN NLA LG +
Sbjct: 79  TMADRAAADRACKDPNPIIDGRKANVNLAYLGAK 112

[Close]

BLAST of Spg004535 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.1e-23
Identity = 88/231 (38.10%), Postives = 107/231 (46.32%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGRNFRVLS 131
           RAC D  P+IDGR+AN NLA LG   +KP                               
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP------------------------------R 126

Query: 132 SFQTGFGGNVGS---AFHSTP--TFPHYAVQQG-------IPYNLYGYSSYSPDYTYPTQ 191
           S QTGF   V     AF   P    PHY   Q        IP  +   +S   DYT  +Q
Sbjct: 127 SIQTGFTIGVQQLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQ 186

Query: 192 SYYNVYGGATAQYPMYGTGPGGIM--------------SGAAAAAAAFYPY 217
           +Y      A  QYP   +   G +              S  AA A AF  Y
Sbjct: 187 AYSQYTTAAYDQYPYAASPAAGFVGYGYTGAVQPPITASTPAAPATAFVQY 204

[Close]

BLAST of Spg004535 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-22
Identity = 83/225 (36.89%), Postives = 106/225 (47.11%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASL-------------GVQRSKPS-------TPKHEKKKWE 131
           RAC D  P+IDGR+AN NLA L             GVQ+  P+        P H      
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALVQRPYGIPAHYVYPQA 126

Query: 132 LTGGGGGGGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYS 191
               G            +    QT          +++  +  YA      Y+ Y Y++  
Sbjct: 127 YVQQG----------LVIPHVQQTAAASTSPYIDYTSAAYAQYAAAAAAAYDQYPYAASP 186

Query: 192 PDYTYPTQSYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPY 217
               Y T + Y    G     P+    PG     AAAAAAAF  Y
Sbjct: 187 ATTGYVTAAGY----GYAVPQPLTAATPG----TAAAAAAAFAQY 213

[Close]

BLAST of Spg004535 vs. ExPASy TrEMBL
Match: A0A6J1IGG9 (RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.2e-150
Identity = 270/294 (91.84%), Postives = 277/294 (94.22%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT      G
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------G 120

Query: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQS 180
           GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPT S
Sbjct: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT-S 180

Query: 181 YYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYG 240
           YYNVYGGATAQYPMYGTGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGF+ GSGQQGYG
Sbjct: 181 YYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG 240

Query: 241 VQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           VQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 VQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Spg004535 vs. ExPASy TrEMBL
Match: A0A6J1EUB1 (RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.2e-150
Identity = 270/294 (91.84%), Postives = 277/294 (94.22%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTP+N+A QFGDTTYTKVFVGGLAWET KDTMK YFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREP+AAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT      G
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------G 120

Query: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQS 180
           GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYA+ QGIPYNLYGYSSYSPDY YPT S
Sbjct: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT-S 180

Query: 181 YYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYG 240
           YYNVYGGATAQYPMYGTGPGGI+SGAAAAAAAFYPYFQFGEGSGGGANGF+ GSGQQGYG
Sbjct: 181 YYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG 240

Query: 241 VQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           VQYPHHL QYSAA+NST TTFPQHYA PPMSLPPTPPTLPSGVTMALP PIPHR
Sbjct: 241 VQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Spg004535 vs. ExPASy TrEMBL
Match: A0A6J1DSJ0 (RNA-binding protein 24 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023991 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.1e-150
Identity = 277/296 (93.58%), Postives = 282/296 (95.27%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPANLA QFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPANLATQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT      G
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT------G 120

Query: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQS 180
           GGGGRNFRVLSSFQ+GFGGNVGSAFHS  TFPHYAVQQGIPYNLYGYSSYSPDYTYPT S
Sbjct: 121 GGGGRNFRVLSSFQSGFGGNVGSAFHSAATFPHYAVQQGIPYNLYGYSSYSPDYTYPT-S 180

Query: 181 YYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS-GGGANGFSAGSGQQ-G 240
           YYNVYGGATAQYPMYGTGPGGIM+GAAAAAAAFYPYFQFGEGS GGG NGF+AGSGQQ G
Sbjct: 181 YYNVYGGATAQYPMYGTGPGGIMNGAAAAAAAFYPYFQFGEGSGGGGGNGFTAGSGQQGG 240

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           YGVQYPHHLFQYSAAINS+AT+FPQHYA PPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 YGVQYPHHLFQYSAAINSSATSFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of Spg004535 vs. ExPASy TrEMBL
Match: A0A6J1ID05 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471971 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.0e-145
Identity = 267/296 (90.20%), Postives = 273/296 (92.23%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           M+PANL  QFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120
           FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP HEKKKWEL     GGG
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWEL----AGGG 120

Query: 121 GGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQS 180
           GGGGRNFRVLS FQ+GFGGNVGSAFHSTPTFPHYAV QGIPYNLYGYSSYSPD+TYPT S
Sbjct: 121 GGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPT-S 180

Query: 181 YYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS--GGGANGFSAGSGQQG 240
           YYNVYGGATAQYP+Y TGPGG+MSG    AAAFYPYFQFGEGS  GGGANGFS GSGQQG
Sbjct: 181 YYNVYGGATAQYPVYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGGANGFSVGSGQQG 240

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           YGVQYPHHLFQYSA INSTATTFPQHY GPPMSLPPTPPTLPSGVTMAL APIPHR
Sbjct: 241 YGVQYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 287

[Close]

BLAST of Spg004535 vs. ExPASy TrEMBL
Match: A0A6J1F1U2 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438889 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.6e-145
Identity = 268/296 (90.54%), Postives = 273/296 (92.23%), Query Frame = 0


Query: 1   MTPANLAGQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           M+PANL GQFGDTTYTKVFVGGLAWETHKDTM KYF+QFGDILEAVVITDKATGRSKGYG
Sbjct: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67

Query: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELT-GGGGGG 120
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTP HEKKKWEL  GGGGGG
Sbjct: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127

Query: 121 GGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQ 180
           GGGGGRNFRVLS FQ+GFGGNVGSAFHSTPTFP YAV QGIPYNLYGYSSYSPDY YPT 
Sbjct: 128 GGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPT- 187

Query: 181 SYYNVYGGATAQYPMYGTGPGGIMSGAAAAAAAFYPYFQFGEGS-GGGANGFSAGSGQQG 240
           SYYNVYGGATAQYPMY TGPGG+MSG    AAAFYPYFQFGEGS GGGANGFSAGSGQQG
Sbjct: 188 SYYNVYGGATAQYPMYSTGPGGLMSG----AAAFYPYFQFGEGSGGGGANGFSAGSGQQG 247

Query: 241 YGVQYPHHLFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPIPHR 295
           YG QYPHHLFQYSA INSTATT PQHY GPPMSLP TPPTLPSGVTMAL  PIPHR
Sbjct: 248 YGGQYPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 298

[Close]

BLAST of Spg004535 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 262.7 bits (670), Expect = 3.6e-70
Identity = 160/279 (57.35%), Postives = 192/279 (68.82%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +PEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGRNFRVLS 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H              G  GGR  +V S
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH--------------GHVGGRGMKVTS 122

Query: 132 SFQTGFGGNVGSAFHSTPTFPHYAVQQGIPY-NLYGYSSYSPDYTYPTQSYYNVYGGATA 191
            F+T F G   +A  S   F HY     +PY N +G+SSYS DY YPTQSYYNVYGGATA
Sbjct: 123 PFKTHF-GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATA 182

Query: 192 QYPMYGTGPGGIMSGAAAA-AAAFYPYFQFGEGSGGGANGFSAGSGQQGYGVQYPHHLFQ 251
           Q+PMYG+GP   M+G AAA AA FYPY QF EG+ G   G++         + YP+H+F 
Sbjct: 183 QHPMYGSGP---MTGVAAAPAAGFYPYLQFAEGN-GPVTGYAP--------LHYPNHMFH 242

Query: 252 YSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALP 289
           YSA        +P H+ G P+SL P+ P +PS V  A+P
Sbjct: 243 YSA----PGGNYP-HHNGSPVSLAPS-PVIPS-VCFAVP 243

[Close]

BLAST of Spg004535 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.1 bits (653), Expect = 3.3e-68
Identity = 159/279 (56.99%), Postives = 191/279 (68.46%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAM 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +PEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGRNFRVLS 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H              G  GGR  +V S
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH--------------GHVGGRGMKVTS 122

Query: 132 SFQTGFGGNVGSAFHSTPTFPHYAVQQGIPY-NLYGYSSYSPDYTYPTQSYYNVYGGATA 191
            F+T F G   +A  S   F HY     +PY N +G+SSYS DY YPT SYYNVYGGATA
Sbjct: 123 PFKTHF-GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPT-SYYNVYGGATA 182

Query: 192 QYPMYGTGPGGIMSGAAAA-AAAFYPYFQFGEGSGGGANGFSAGSGQQGYGVQYPHHLFQ 251
           Q+PMYG+GP   M+G AAA AA FYPY QF EG+ G   G++         + YP+H+F 
Sbjct: 183 QHPMYGSGP---MTGVAAAPAAGFYPYLQFAEGN-GPVTGYAP--------LHYPNHMFH 242

Query: 252 YSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALP 289
           YSA        +P H+ G P+SL P+ P +PS V  A+P
Sbjct: 243 YSA----PGGNYP-HHNGSPVSLAPS-PVIPS-VCFAVP 242

[Close]

BLAST of Spg004535 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 226.1 bits (575), Expect = 3.7e-59
Identity = 145/266 (54.51%), Postives = 165/266 (62.03%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGRNFRV- 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H             GGGG   N RV 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH-------------GGGGRINNMRVM 127

Query: 131 LSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQSYYNVYGGAT 190
           +S+ QTGFG          PTF HY     +P NL+GYS YSPDY+    + Y +YG  +
Sbjct: 128 MSTMQTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTS 187

Query: 191 -AQYPMYG--TGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYGVQYPHH 250
             QY +YG     GG ++ AAA+A  FYP        GGG  G      Q  Y     HH
Sbjct: 188 GGQYGVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HH 232

Query: 251 LFQYSAAINSTATTFPQHYAGPPMSL 273
           L  Y+          P HY+ P  S+
Sbjct: 248 LSSYN----------PHHYSPPTFSM 232

[Close]

BLAST of Spg004535 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 224.9 bits (572), Expect = 8.2e-59
Identity = 149/281 (53.02%), Postives = 170/281 (60.50%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGRNFRV- 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H             GGGG   N RV 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH-------------GGGGRINNMRVM 127

Query: 131 LSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQSYYNVYGGAT 190
           +S+ QTGFG          PTF HY     +P NL+GYS YSPDY+    + Y +YG  +
Sbjct: 128 MSTMQTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTS 187

Query: 191 -AQYPMYG--TGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYGVQYPHH 250
             QY +YG     GG ++ AAA+A  FYP        GGG  G      Q  Y     HH
Sbjct: 188 GGQYGVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HH 247

Query: 251 LFQYSAAINSTATTFPQHYAGPPMSL-------PPTPPTLP 281
           L  Y+          P HY+ P  S+       P  PP +P
Sbjct: 248 LSSYN----------PHHYSPPTFSMQQGVTGFPLQPPLIP 247

[Close]

BLAST of Spg004535 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 221.5 bits (563), Expect = 9.1e-58
Identity = 148/285 (51.93%), Postives = 170/285 (59.65%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE EAA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGGGGRNFRV- 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H             GGGG   N RV 
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH-------------GGGGRINNMRVM 127

Query: 131 LSSFQTGFGGNVGSAFHSTPTFPHYAVQQGIPYNLYGYSSYSPDYTYPTQSYYNVYGGAT 190
           +S+ QTGFG          PTF HY     +P NL+GYS YSPDY+    + Y +YG  +
Sbjct: 128 MSTMQTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTS 187

Query: 191 -AQYPMYG--TGPGGIMSGAAAAAAAFYPYFQFGEGSGGGANGFSAGSGQQGYGVQYPHH 250
             QY +YG     GG ++ AAA+A  FYP        GGG  G      Q  Y     HH
Sbjct: 188 GGQYGVYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HH 247

Query: 251 LFQYSAAINSTATTFPQHYAGPPMSLPPTPPTLPSGVTMALPAPI 292
           L  Y+          P HY+ P  S+        S  T +   P+
Sbjct: 248 LSSYN----------PHHYSPPTFSMQQGSRNRLSASTTSYSLPL 251

The following BLAST results are available for this feature:

BLAST of Spg004535 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930178.1	2.5e-150	91.84	RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-bindi...	[more]
XP_022157230.1	4.3e-150	93.58	RNA-binding protein 24 isoform X1 [Momordica charantia]	[more]
XP_023535742.1	3.6e-149	91.16	RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6592286.1	4.7e-149	91.16	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023523843.1	8.0e-149	90.88	probable RNA-binding protein ARP1 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg004535 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.6e-25	36.59	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9H0Z9	7.6e-25	58.51	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q62176	7.6e-25	58.51	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q5ZJX4	7.1e-23	38.10	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q9I8B3	1.6e-22	36.89	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]

BLAST of Spg004535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IGG9	1.2e-150	91.84	RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE...	[more]
A0A6J1EUB1	1.2e-150	91.84	RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 ...	[more]
A0A6J1DSJ0	2.1e-150	93.58	RNA-binding protein 24 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023991...	[more]
A0A6J1ID05	2.0e-145	90.20	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1F1U2	2.6e-145	90.54	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Spg004535 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33470.1	3.6e-70	57.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.2	3.3e-68	56.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	3.7e-59	54.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	8.2e-59	53.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	9.1e-58	51.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 6.9E-22 score: 88.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..73 e-value: 1.3E-15 score: 57.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..100 score: 16.687742
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 10..140 e-value: 3.6E-24 score: 87.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..121
None	No IPR available	PANTHER	PTHR11176:SF16	OS01G0876800 PROTEIN	coord: 1..289
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 2.92381E-41 score: 135.821
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..289
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004535.1	Spg004535.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding