Spg004475 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004475
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 4
Location	scaffold9: 11740815 .. 11742416 (-)
RNA-Seq Expression	Spg004475
Synteny	Spg004475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATTCCTTCTCTTCTTTTTGTAATTTAGTCTCAGCAGTCTTTGCGAGTTGCTATCCTCTTCTGTAATTCTTTATAGGCGGGGATCTTTTGCTTCCCCCTTCCCTATAGTTTAACTCATTAACTGACATAAAAAATTTATAGAAGTTAGTATGCTAGTATAAAAGTTATCTCATAAACAGTGGGAGGGGGAGGGGGGTTATGTTGCTCATGAGATTAGCATACTCATAGTTAGAAATAATAAACCTATGTACCAAAAATAGACTAAACTTCGTAACTCCAACTTACCAGAACACTTTTTGCTAATTTTTTTCTTTATTCTACTTTCACATTGGAGGTCGATCAATTGTGATTTAGGTGGTTCACAGAGATCCAAAGGAATAACTTTTTGAATACCTACGAGACCTCAAAGAAATTTGTAAGTGCTAACCTTAAGTTGAAATTGAGTTTGTAAAACTATATCTTGGAAATGGATGGGAAATTCTAGTTGTTATACGTAGGCTTCTTTCTTCATGAAATGCACACGTAGTATTTAATTTTCAAGTAGTGTAAGATCATATTGTAATTTCATGAGATTAATGGTATCCACACTTTGGTTCCCCCCTACCCAAAAAATGATGAGATACCTCTTGAGATATCAGAAGATGTTTCACATGGTTCACATGAAAATCAGCTTGCTTTGGGAATTTATATTTGCTTGTAAAATGGGTGTTGAATTAGGATTCAATCAGGGAAGTTCTTCGTTCTTTATTTGAAAAATCGTATGGGTTTTGTTCAGTTGCCTTTCAAAAAAAGTTAACTATTACAAGTGGCTGTCATAGTTCCTAACAAGGGATATCTAATTTTGAGACATCTTGCAATGCCAGACAAATTCAAGTAGGAAAAGGCGCAAATTCGACGTTGAAGAATCTGAGGATAGTGAATATGGTAAAGGGAGGACAGTGAAGGTTATAGAAAGTAAAGGCCTCGACTCCCAGAAAGAAGAGTTTCCAAAACGCAAGAGGAACATTCGAAAACGAAGATTAGCTCTTCAAGGAAAAGGTATAAAAGATATTAGGAAGAGACGCAAGACAGAGATGTTTACTGACGATGATGTTGGACTGCTCTCTGATTCTAGTGATGGAAGCATGTTCAGTGAGGATGAGCTGCAGGATGTTGATGAATGTTCAGAAAGAAGAGAAGCCTCAGGCTCAGATGAGTAGTTTGGCTGGTTTTCTTGTTTCCAAGTTGCAACATGCCAAGTTCAAGGAAGGAAAGCTGGGGCAGCCTTTGTTACATAGCTTCTGTAGTGTATAACTTTTACAATAATTAGTTTCATCTTAGATTGACATGTTCTTCATTAGCTGGTTGCTTCATGTATCCTTTTTTTAGAATGGCAATTTGTGAATATTGCTGCAACTTGTGCATATATGTATTGGGTTCTAATATAGTACGTGTATTAATTTTGTTGAGAATCAGGCTATTCTCCTTCCAAATACGGCCGTCAAATGACTCAAATGTGACTGCTCGGGTGGTTGTGGAAATAGGTTATACGTGAAGTATATGTTTTTAATATGTAACATTTTATTATTGTGATTAGCAAATAAAAACAAATCTATAA

mRNA sequence

ATGGTGATTCCTTCTCTTCTTTTTACAAATTCAAGTAGGAAAAGGCGCAAATTCGACGTTGAAGAATCTGAGGATAGTGAATATGGTAAAGGGAGGACAGTGAAGGTTATAGAAAGTAAAGGCCTCGACTCCCAGAAAGAAGAGTTTCCAAAACGCAAGAGGAACATTCGAAAACGAAGATTAGCTCTTCAAGGAAAAGGTATAAAAGATATTAGGAAGAGACGCAAGACAGAGATGTTTACTGACGATGATGTTGGACTGCTCTCTGATTCTAGTGATGGAAGCATGTTCAGTGAGGATGAGCTGCAGGATGTTGATGAATGTTCAGAAAGAAGAGAAGCCTCAGGCTCAGATGAGTAG

Coding sequence (CDS)

ATGGTGATTCCTTCTCTTCTTTTTACAAATTCAAGTAGGAAAAGGCGCAAATTCGACGTTGAAGAATCTGAGGATAGTGAATATGGTAAAGGGAGGACAGTGAAGGTTATAGAAAGTAAAGGCCTCGACTCCCAGAAAGAAGAGTTTCCAAAACGCAAGAGGAACATTCGAAAACGAAGATTAGCTCTTCAAGGAAAAGGTATAAAAGATATTAGGAAGAGACGCAAGACAGAGATGTTTACTGACGATGATGTTGGACTGCTCTCTGATTCTAGTGATGGAAGCATGTTCAGTGAGGATGAGCTGCAGGATGTTGATGAATGTTCAGAAAGAAGAGAAGCCTCAGGCTCAGATGAGTAG

Protein sequence

MVIPSLLFTNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGIKDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE

Homology

[Close]

BLAST of Spg004475 vs. NCBI nr
Match: XP_022973404.1 (uncharacterized protein LOC111471956 isoform X1 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGR VKV+E+KGL+S KEEFPKRKRN RKRRLALQGKGI
Sbjct: 1049 TNSSRKRRKFDVEESEDSEYGKGRPVKVVENKGLESHKEEFPKRKRNTRKRRLALQGKGI 1108

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRKTE+FTDDDVGLLSDSSDGSMFSEDELQDVDECSERRE SGSDE
Sbjct: 1109 KDIRKRRKTEIFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREGSGSDE 1159

[Close]

BLAST of Spg004475 vs. NCBI nr
Match: XP_022932462.1 (uncharacterized protein LOC111438872 isoform X1 [Cucurbita moschata])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGR VKV E+KGL+S KEEFPKRKRN RKRRLALQGKGI
Sbjct: 1049 TNSSRKRRKFDVEESEDSEYGKGRPVKVAENKGLESHKEEFPKRKRNTRKRRLALQGKGI 1108

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERRE SGSDE
Sbjct: 1109 KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREGSGSDE 1159

[Close]

BLAST of Spg004475 vs. NCBI nr
Match: XP_022973406.1 (uncharacterized protein LOC111471956 isoform X3 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGR VKV+E+KGL+S KEEFPKRKRN RKRRLALQGKGI
Sbjct: 985  TNSSRKRRKFDVEESEDSEYGKGRPVKVVENKGLESHKEEFPKRKRNTRKRRLALQGKGI 1044

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRKTE+FTDDDVGLLSDSSDGSMFSEDELQDVDECSERRE SGSDE
Sbjct: 1045 KDIRKRRKTEIFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREGSGSDE 1095

[Close]

BLAST of Spg004475 vs. NCBI nr
Match: KAG6607555.1 (PHD finger protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGR VKV E+KGL+S KEEFPKRKRN RKRRLALQGKGI
Sbjct: 1040 TNSSRKRRKFDVEESEDSEYGKGRPVKVAENKGLESHKEEFPKRKRNTRKRRLALQGKGI 1099

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERRE SGSDE
Sbjct: 1100 KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREGSGSDE 1150

[Close]

BLAST of Spg004475 vs. NCBI nr
Match: KAG7037193.1 (PHD finger protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGR VKV E+KGL+S KEEFPKRKRN RKRRLALQGKGI
Sbjct: 1047 TNSSRKRRKFDVEESEDSEYGKGRPVKVAENKGLESHKEEFPKRKRNTRKRRLALQGKGI 1106

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERRE SGSDE
Sbjct: 1107 KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREGSGSDE 1157

[Close]

BLAST of Spg004475 vs. ExPASy TrEMBL
Match: A0A6J1IB99 (uncharacterized protein LOC111471956 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471956 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.6e-46
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGR VKV+E+KGL+S KEEFPKRKRN RKRRLALQGKGI
Sbjct: 1046 TNSSRKRRKFDVEESEDSEYGKGRPVKVVENKGLESHKEEFPKRKRNTRKRRLALQGKGI 1105

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRKTE+FTDDDVGLLSDSSDGSMFSEDELQDVDECSERRE SGSDE
Sbjct: 1106 KDIRKRRKTEIFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREGSGSDE 1156

[Close]

BLAST of Spg004475 vs. ExPASy TrEMBL
Match: A0A6J1IEH2 (uncharacterized protein LOC111471956 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471956 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.6e-46
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGR VKV+E+KGL+S KEEFPKRKRN RKRRLALQGKGI
Sbjct: 1049 TNSSRKRRKFDVEESEDSEYGKGRPVKVVENKGLESHKEEFPKRKRNTRKRRLALQGKGI 1108

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRKTE+FTDDDVGLLSDSSDGSMFSEDELQDVDECSERRE SGSDE
Sbjct: 1109 KDIRKRRKTEIFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREGSGSDE 1159

[Close]

BLAST of Spg004475 vs. ExPASy TrEMBL
Match: A0A6J1I8K0 (uncharacterized protein LOC111471956 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471956 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.6e-46
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGR VKV+E+KGL+S KEEFPKRKRN RKRRLALQGKGI
Sbjct: 985  TNSSRKRRKFDVEESEDSEYGKGRPVKVVENKGLESHKEEFPKRKRNTRKRRLALQGKGI 1044

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRKTE+FTDDDVGLLSDSSDGSMFSEDELQDVDECSERRE SGSDE
Sbjct: 1045 KDIRKRRKTEIFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREGSGSDE 1095

[Close]

BLAST of Spg004475 vs. ExPASy TrEMBL
Match: A0A6J1DP31 (uncharacterized protein LOC111022980 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022980 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.6e-46
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGRTVKVIE KGL+SQKEEFPKRKRN RKRRL+LQGKGI
Sbjct: 1018 TNSSRKRRKFDVEESEDSEYGKGRTVKVIEGKGLESQKEEFPKRKRNTRKRRLSLQGKGI 1077

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRK +MFTDDDVGLLSDSSDGSMFSEDELQDVDEC +RREASGSDE
Sbjct: 1078 KDIRKRRKADMFTDDDVGLLSDSSDGSMFSEDELQDVDECPQRREASGSDE 1128

[Close]

BLAST of Spg004475 vs. ExPASy TrEMBL
Match: A0A6J1DRZ6 (uncharacterized protein LOC111022980 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022980 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.6e-46
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 9    TNSSRKRRKFDVEESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRKRRLALQGKGI 68
            TNSSRKRRKFDVEESEDSEYGKGRTVKVIE KGL+SQKEEFPKRKRN RKRRL+LQGKGI
Sbjct: 1033 TNSSRKRRKFDVEESEDSEYGKGRTVKVIEGKGLESQKEEFPKRKRNTRKRRLSLQGKGI 1092

Query: 69   KDIRKRRKTEMFTDDDVGLLSDSSDGSMFSEDELQDVDECSERREASGSDE 120
            KDIRKRRK +MFTDDDVGLLSDSSDGSMFSEDELQDVDEC +RREASGSDE
Sbjct: 1093 KDIRKRRKADMFTDDDVGLLSDSSDGSMFSEDELQDVDECPQRREASGSDE 1143

[Close]

BLAST of Spg004475 vs. TAIR 10
Match: AT1G32810.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 43/103 (41.75%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 9    TNSSRKRRKFDV--EESEDSEYGKGRTVKVIESKGLDSQKEEFPKRKRNIRK-RRLALQG 68
            TNS +K+RK D   E+S+++E  KG   ++ +     SQ EEFPK KR  RK RRL++Q 
Sbjct: 947  TNSGKKKRKLDAAEEDSDENESSKGGRKRLHQH---HSQGEEFPKGKRKARKRRRLSIQR 1006

Query: 69   KGIKDIRKRR-KTEMFTDDDVGLLSDSSDGSMFSEDELQDVDE 108
            KGIK +RK+R + E+  +D+    SD+S+ S+F ++E ++ +E
Sbjct: 1007 KGIKVLRKKRNEEEVSEEDEEDAFSDTSEESIFCDEEEEEEEE 1046

The following BLAST results are available for this feature:

BLAST of Spg004475 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973404.1	1.2e-45	92.79	uncharacterized protein LOC111471956 isoform X1 [Cucurbita maxima]	[more]
XP_022932462.1	1.2e-45	93.69	uncharacterized protein LOC111438872 isoform X1 [Cucurbita moschata]	[more]
XP_022973406.1	1.2e-45	92.79	uncharacterized protein LOC111471956 isoform X3 [Cucurbita maxima]	[more]
KAG6607555.1	1.2e-45	93.69	PHD finger protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037193.1	1.2e-45	93.69	PHD finger protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Spg004475 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IB99	5.6e-46	92.79	uncharacterized protein LOC111471956 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IEH2	5.6e-46	92.79	uncharacterized protein LOC111471956 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1I8K0	5.6e-46	92.79	uncharacterized protein LOC111471956 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DP31	5.6e-46	92.79	uncharacterized protein LOC111022980 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DRZ6	5.6e-46	92.79	uncharacterized protein LOC111022980 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Spg004475 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32810.2	2.4e-09	41.75	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..119
None	No IPR available	PANTHER	PTHR14571:SF9	HISTONE-LYSINE N-METHYLTRANSFERASE SET-26-RELATED	coord: 9..118
None	No IPR available	PANTHER	PTHR14571	UNCHARACTERIZED	coord: 9..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004475.1	Spg004475.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding