Spg004449 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004449
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold9: 11290025 .. 11293025 (-)
RNA-Seq Expression	Spg004449
Synteny	Spg004449

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCATATAGCATCTTCATTCTCCACATCTAATCTTCACCAATTTACACATTTTGCATTCTTTCCTCCTTCGATCTCACCTTCTGCTTCTCCGGCCATGGCTTCCTTGGCAGCCTCCACCGCAGCCGCCTCGCTCGGCGTCTCCGAAATGCTCAGAAATCCCCTCAGCTTCTCCGGCGCCTCCGCCAGGTCCGCTCCCTCTGCTTCTAGCCCGGTCACCTTCAAGACCGTTGCGCTCTTCGGGAAGAAGCCGGCTGCCGCTCCCAAGCCGAAGCCCTCCGCCGTCTCTCCGGCCAACGACGAGCTCGCCAAGTGGTATGGTAAGTCCAACCACCTCCAATTCAATGAAAATTGTTCACTCAATTGAATTCTGTTCTATATATGTACTTACATTATGTGGAAATCATGATGGTCTAAGACAATTTGAGACCTTAGACAGAATTTCATATCATTATATCTATATACAGGAAAATTAGTTATTAGGTTTTAGTTTTATATCTTTCTGTTATGTGCATATCTCTGTTTTAAAGGTATGTTATCAAAACGTCTATAAAGTCTAATTTGTTTAATTCTGTAACAAATCTATCAATTTTGTTTTATGATATTTAATTTATATTTTATTTCTTGAGTTCAACAATTGCTAGGTAAGAAAATCGAATGGTAAATATACTTATGCACACATTGATAATGAACTAAACAACTCTCTAGTGGTCGTCTCATTTGCTTATACATGCTTCTTTAAAGCCAATCTTGATTACGTTTGTTGGCACTAATTAGGTCCCGACAGAAGGATTTTCTTGCCTGATGGGCTGTTGGACCGATCCGAGATCCCGGAGTACTTGAATGGCGAGGTCCCCGGAGAGTATGACTTAATTTCCTTGTCCTCTTTTTTTATCCAATTACTTAGGTCCCGTTTGATAACCACTTGGTTTTTTAAAAACATTTGAATTCTTAACCAAATTCCAAAAACAAAAACAACTTTTTGAAAACTTTTTTTTAGTTTTCAAAACTTGAGTTGGTTTTTGAAAACATAGGAAGAACGTAGGTAACAAAACAAAGAAATTTGCAGTGTTTATACGTTTAATTTTAAAAAACCAAAAACAAAATGGTTATCAAACGAAGCCTTATTTTTCCCGAAAGGAATCGGCCAAACTCAAACGACATTGTTTTTATTTGGTGAATCACAGCTACGGTTACGACCCCTTTGGACTCAGCAAGAAACCAGAAGACTTCAGCAAGTAAATAAGTCTCTATTAATTTACAATTAAGTTGAAGTAGGGAAGAAGCGCTTCGTGAGTAAACGGCCTTTGTTTGTTTGGCAGATACCAAGCATTTGAGTTGATTCATGCACGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTTGGTGCTAACTGCGGCCCCGAGGCTGTCTGGTTCAAGGTCAATTTTCTGCAGTGATTTCTATTTGGAAGTGCTTTTGAAATAAGCTGTTCGTTCTAATCAGATCTAATTTGTATGGGATATGCAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATTGCCGCCGTCATTGCTGAGGTTGTTCTTGTTGGTGGTGCTGAATATTACAGAATCATCAACGGCTTGGTACGTATTTAATAATTTAACACGTATTAGAGCATAAAATATTTTGTTGAAAATTTTAAGGTTAAAAAAACACTTTTGGTGTCTAAGTCCCCTGAATTTTGGCTTGTGAAAAAATTCATTGCAATTAAGAGTAAATTTTTTATTATGTAATTACTTAATCTTTTTTTTTTGACAATATAATGACTTAATCTTTTGTAGTTTACAAATACACATAATCCTAATCAAGTTATCAATCATTGTGGGGAAGAAATTTCCTAAATCTTATAATAATTTTCACGATATATAGAGACTAAATCATTACAAATTTTAAAGTTCAAGGACTAAATTATTACATATTAAAGTTTAGGGACTAAATTGCTATCAAATTGAAAGTACATGGATTAAACCGTTACAAATTAAAGTTTAGAGACTAAATTGTTTCTTTTATGAAAGTTTAGGAATCAAATGTGTTTTTTACCCAAAATTTAATGGTGGATATTGATGAGAAATTATGCTATCTAGTCCGTAGAAAAGTATTGTTTCTTGTAGTAATTTAACGGGTATTGTTTTTGTAGAACTTTGAGGACAAGCTTCACCCGGGAGGGCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATAAAGAATGGAAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCTTACGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCCAAGCATTTGAGCGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAAAATGAATGAATGAATCAATGCATTTTAAAAGCAAAAGCCCAAGTGATTTCTGTATTGAATGAAAATCTTGAATGCGTTTGTAAATTTGTATCGAGACTATTTGTAGCCCCTGACGACTCACTCTCGTGCATTTGAAACATATGAACAAGAGTTAAGATCAAATTTTCTATCAATTTTGTGTGTACACTGAGCATATTCTAGCCACACTAGCTGGGATTGGGTTAGGGCACAATTTCTCTATTTCTTTCTATCAAATTTGAGTTTTCAGGTTGATGGTATGGTGGATCTAATACAACTCAAGTTGAATTTTCATAGCAACCAACATGGTATATGTATACCACTAGGAATGGCAAAAATACCTGTCGGGTCGGGAGGACTTTCAGCATTAATTTCAAATAGAAATGAAAAAGAAAGAAAAGTTATGCAGGAGAAAACTCTTTGCTTTTATATATGAAATAGTTGCACAATCAAGCCATATGTAATCTAGCCATATGTAAAGGTCTGGGGAGAAAAACTCCTAC

mRNA sequence

ATGGCTTCCTTGGCAGCCTCCACCGCAGCCGCCTCGCTCGGCGTCTCCGAAATGCTCAGAAATCCCCTCAGCTTCTCCGGCGCCTCCGCCAGGTCCGCTCCCTCTGCTTCTAGCCCGGTCACCTTCAAGACCGTTGCGCTCTTCGGGAAGAAGCCGGCTGCCGCTCCCAAGCCGAAGCCCTCCGCCGTCTCTCCGGCCAACGACGAGCTCGCCAAGTGGTATGGTCCCGACAGAAGGATTTTCTTGCCTGATGGGCTGTTGGACCGATCCGAGATCCCGGAGTACTTGAATGGCGAGGAATCGGCCAAACTCAAACGACATTGTTTTTATTTGGTGAATCACAGCTACGGTTACGACCCCTTTGGACTCAGCAAGAAACCAGAAGACTTCAGCAAATACCAAGCATTTGAGTTGATTCATGCACGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTTGGTGCTAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATTGCCGCCGTCATTGCTGAGGTTGTTCTTGTTGGTGGTGCTGAATATTACAGAATCATCAACGGCTTGAACTTTGAGGACAAGCTTCACCCGGGAGGGCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATAAAGAATGGAAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCTTACGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCCAAGCATTTGAGCGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA

Coding sequence (CDS)

ATGGCTTCCTTGGCAGCCTCCACCGCAGCCGCCTCGCTCGGCGTCTCCGAAATGCTCAGAAATCCCCTCAGCTTCTCCGGCGCCTCCGCCAGGTCCGCTCCCTCTGCTTCTAGCCCGGTCACCTTCAAGACCGTTGCGCTCTTCGGGAAGAAGCCGGCTGCCGCTCCCAAGCCGAAGCCCTCCGCCGTCTCTCCGGCCAACGACGAGCTCGCCAAGTGGTATGGTCCCGACAGAAGGATTTTCTTGCCTGATGGGCTGTTGGACCGATCCGAGATCCCGGAGTACTTGAATGGCGAGGAATCGGCCAAACTCAAACGACATTGTTTTTATTTGGTGAATCACAGCTACGGTTACGACCCCTTTGGACTCAGCAAGAAACCAGAAGACTTCAGCAAATACCAAGCATTTGAGTTGATTCATGCACGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTTGGTGCTAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATTGCCGCCGTCATTGCTGAGGTTGTTCTTGTTGGTGGTGCTGAATATTACAGAATCATCAACGGCTTGAACTTTGAGGACAAGCTTCACCCGGGAGGGCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATAAAGAATGGAAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCTTACGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCCAAGCATTTGAGCGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA

Protein sequence

MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKPSAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL

Homology

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BLAST of Spg004449 vs. NCBI nr
Match: XP_038889943.1 (chlorophyll a-b binding protein CP26, chloroplastic [Benincasa hispida])

HSP 1 Score: 558.5 bits (1438), Expect = 3.5e-155
Identity = 283/303 (93.40%), Postives = 283/303 (93.40%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSP TFKTVALFGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           SAVSP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 291

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 291

[Close]

BLAST of Spg004449 vs. NCBI nr
Match: KAG7037190.1 (Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 553.1 bits (1424), Expect = 1.5e-153
Identity = 281/303 (92.74%), Postives = 282/303 (93.07%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLSFSGASARSA SASSPVT K VA+FGKKPAAAPKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERV 291

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 291

[Close]

BLAST of Spg004449 vs. NCBI nr
Match: XP_022932496.1 (chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 552.0 bits (1421), Expect = 3.2e-153
Identity = 281/303 (92.74%), Postives = 281/303 (92.74%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLSFSGASARSA SASSPVT K VALFGKKPA APKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERV 291

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 291

[Close]

BLAST of Spg004449 vs. NCBI nr
Match: XP_022973438.1 (chlorophyll a-b binding protein CP26, chloroplastic [Cucurbita maxima])

HSP 1 Score: 550.8 bits (1418), Expect = 7.2e-153
Identity = 279/303 (92.08%), Postives = 281/303 (92.74%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLS SGASARSA SASSPVT K VA+FGKKPAAAPKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           SAVSP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AV+AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERV 291

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 291

[Close]

BLAST of Spg004449 vs. NCBI nr
Match: KAG6607551.1 (Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 550.4 bits (1417), Expect = 9.4e-153
Identity = 280/303 (92.41%), Postives = 280/303 (92.41%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLSFSGASARSA SASSPVT K VALFGKKPA  PKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPTPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERV 291

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 291

[Close]

BLAST of Spg004449 vs. ExPASy Swiss-Prot
Match: Q9XF89 (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB5 PE=1 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 2.8e-131
Identity = 236/293 (80.55%), Postives = 249/293 (84.98%), Query Frame = 0


Query: 11  ASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKPSAVSPANDEL 70
           ASLGVSEML  PL+F   S  SAP ASSP TFKTVALF KK  A  K K  AVS  +DEL
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSK--AVSETSDEL 61

Query: 71  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDF 130
           AKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDPFGL KKPE+F
Sbjct: 62  AKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VAGDYGYDPFGLGKKPENF 121

Query: 131 SKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNI 190
           +KYQAFELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFG NI
Sbjct: 122 AKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNI 181

Query: 191 PINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIK 250
           PINL+ AV+AEVVL+GGAEYYRI NGL+FEDKLHPGGPFDPLGLA DP+Q A+LKVKEIK
Sbjct: 182 PINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIK 241

Query: 251 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 304
           NGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPFGNNLLTVI+G AER PTL
Sbjct: 242 NGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of Spg004449 vs. ExPASy Swiss-Prot
Match: P12330 (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB1R PE=2 SV=2)

HSP 1 Score: 211.8 bits (538), Expect = 1.0e-53
Identity = 130/268 (48.51%), Postives = 159/268 (59.33%), Query Frame = 0


Query: 26  SGASARSAPSASSPVTFKTVALFGKKPAAAPKPKPSAVSPANDELAKWYGPDRRIFLPDG 85
           S   AR+APS SS + F    +  +K AA PKP  S+ SP       WYG DR ++L  G
Sbjct: 10  SPVMARAAPSTSSAL-FGEARITMRKTAAKPKPAASSGSP-------WYGADRVLYL--G 69

Query: 86  LLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFSKYQAFELIHARWAM 145
            L   E P YL GE                YG+D  GLS  PE F+K +  E+IH+RWAM
Sbjct: 70  PLS-GEPPSYLTGEFPG------------DYGWDTAGLSADPETFAKNRELEVIHSRWAM 129

Query: 146 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI---NLIAAVIAEV 205
           LGA G + PE   + G   G EAVWFK G+ +     L+Y GN   I   +++A    +V
Sbjct: 130 LGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 189

Query: 206 VLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAML 265
           VL+G  E YRI  G   E  D L+PGG FDPLGLADDP+  A LKVKEIKNGRLAMF+M 
Sbjct: 190 VLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 249

Query: 266 GFYFQAYVTGEGPVENLAKHLSDPFGNN 289
           GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 250 GFFVQAIVTGKGPLENLADHLADPVNNN 253

[Close]

BLAST of Spg004449 vs. ExPASy Swiss-Prot
Match: P27517 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta OX=3047 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.0e-52
Identity = 112/223 (50.22%), Postives = 139/223 (62.33%), Query Frame = 0


Query: 72  KWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFS 131
           ++YGPDR  FL  G    ++ PEYL GE                YG+D  GLS  P+ F+
Sbjct: 32  EFYGPDRAKFL--GPFSENDTPEYLTGEFPG------------DYGWDTAGLSADPQTFA 91

Query: 132 KYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIP 191
           +Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY GN   
Sbjct: 92  RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESL 151

Query: 192 I---NLIAAVIAEVVLVGGAEYYRIING----LNFEDKLHPGGPFDPLGLADDPDQAAIL 251
           I   ++IA +  +VVL+G AE YR   G    L+  D L+PGGPFDPLGLADDPD  A L
Sbjct: 152 IHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAEL 211

Query: 252 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGN 288
           KVKEIKNGRLAMF+ LGF+ QA VTG+GPV+NL  HL+DP  N
Sbjct: 212 KVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240

[Close]

BLAST of Spg004449 vs. ExPASy Swiss-Prot
Match: P12331 (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB2R PE=2 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 8.3e-51
Identity = 124/270 (45.93%), Postives = 155/270 (57.41%), Query Frame = 0


Query: 36  ASSPVTFKTVALFGKKPA------------AAPKPKPSAVSPANDELAKWYGPDRRIFLP 95
           A++ +   + AL GK  A            +A KPKP+A        + WYG DR ++L 
Sbjct: 2   AAATMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASG------SPWYGADRVLYL- 61

Query: 96  DGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFSKYQAFELIHARW 155
            G L   E P YL GE                YG+D  GLS  PE F+K +  E+IH+RW
Sbjct: 62  -GPLS-GEPPSYLTGEFPG------------DYGWDTAGLSADPETFAKNRELEVIHSRW 121

Query: 156 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI---NLIAAVIA 215
           AMLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   I   +++A    
Sbjct: 122 AMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 181

Query: 216 EVVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFA 275
           +VVL+G  E YRI  G   E  D L+PGG FDPLGLADDP+  A LKVKEIKNGRLAMF+
Sbjct: 182 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 241

Query: 276 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 289
           M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 242 MFGFFVQAIVTGKGPLENLADHLADPVNNN 249

[Close]

BLAST of Spg004449 vs. ExPASy Swiss-Prot
Match: P27497 (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays OX=4577 GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 8.3e-51
Identity = 126/278 (45.32%), Postives = 161/278 (57.91%), Query Frame = 0


Query: 16  SEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKPSAVSPANDELAKWYG 75
           S M  +  +F+G  A + PS+     F    +  +K AA  KP  S+ SP       WYG
Sbjct: 4   STMALSSTAFAG-KAVNVPSS----LFGEARVTMRKTAAKAKPAASSGSP-------WYG 63

Query: 76  PDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFSKYQA 135
           PDR ++L  G L   E P YL GE                YG+D  GLS  PE F+K + 
Sbjct: 64  PDRVLYL--GPLS-GEPPSYLTGEFPG------------DYGWDTAGLSADPETFAKNRE 123

Query: 136 FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI--- 195
            E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   I   
Sbjct: 124 LEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 183

Query: 196 NLIAAVIAEVVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIK 255
           +++A    +VVL+G  E YR+  G   E  D L+PGG FDPLGLADDP+  A +KVKE+K
Sbjct: 184 SILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELK 243

Query: 256 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 289
           NGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 244 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

[Close]

BLAST of Spg004449 vs. ExPASy TrEMBL
Match: A0A6J1EWI5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111438899 PE=3 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 1.6e-153
Identity = 281/303 (92.74%), Postives = 281/303 (92.74%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLSFSGASARSA SASSPVT K VALFGKKPA APKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERV 291

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 291

[Close]

BLAST of Spg004449 vs. ExPASy TrEMBL
Match: A0A6J1ID20 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471983 PE=3 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 3.5e-153
Identity = 279/303 (92.08%), Postives = 281/303 (92.74%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLS SGASARSA SASSPVT K VA+FGKKPAAAPKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           SAVSP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AV+AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERV 291

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 291

[Close]

BLAST of Spg004449 vs. ExPASy TrEMBL
Match: A0A0A0KXR5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G646700 PE=3 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.1e-150
Identity = 275/303 (90.76%), Postives = 278/303 (91.75%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLSF   S+RSAPS S+P TFKTVALFGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           SA SP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDF+KYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 288

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 288

[Close]

BLAST of Spg004449 vs. ExPASy TrEMBL
Match: A0A1S3CBI9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498611 PE=3 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 8.1e-150
Identity = 275/303 (90.76%), Postives = 276/303 (91.09%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLSFS  SA   PSASSP TFKTVALFGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSA--PPSASSPATFKTVALFGKKPAAPSKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           +  SP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  APASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 289

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 289

[Close]

BLAST of Spg004449 vs. ExPASy TrEMBL
Match: A0A6J1DTI7 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022982 PE=3 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 3.1e-149
Identity = 275/303 (90.76%), Postives = 276/303 (91.09%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLSF G S RSAPSASS VT KTVALFGKKPAA  KP  
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFGGGSPRSAPSASSSVTVKTVALFGKKPAAKAKPS- 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDP 120
           +AVSP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDP
Sbjct: 61  AAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VPGDYGYDP 120

Query: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180
           FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 180

Query: 181 NTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240
           NTLNYFGNNIPINLI AVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ
Sbjct: 181 NTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQ 240

Query: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERV 300
           AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGN ERV
Sbjct: 241 AAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNVERV 290

Query: 301 PTL 304
           PTL
Sbjct: 301 PTL 290

[Close]

BLAST of Spg004449 vs. TAIR 10
Match: AT4G10340.1 (light harvesting complex of photosystem II 5 )

HSP 1 Score: 469.5 bits (1207), Expect = 2.0e-132
Identity = 236/293 (80.55%), Postives = 249/293 (84.98%), Query Frame = 0


Query: 11  ASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKPSAVSPANDEL 70
           ASLGVSEML  PL+F   S  SAP ASSP TFKTVALF KK  A  K K  AVS  +DEL
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSK--AVSETSDEL 61

Query: 71  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDF 130
           AKWYGPDRRIFLPDGLLDRSEIPEYLNGE            V   YGYDPFGL KKPE+F
Sbjct: 62  AKWYGPDRRIFLPDGLLDRSEIPEYLNGE------------VAGDYGYDPFGLGKKPENF 121

Query: 131 SKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNI 190
           +KYQAFELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFG NI
Sbjct: 122 AKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNI 181

Query: 191 PINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIK 250
           PINL+ AV+AEVVL+GGAEYYRI NGL+FEDKLHPGGPFDPLGLA DP+Q A+LKVKEIK
Sbjct: 182 PINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIK 241

Query: 251 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 304
           NGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPFGNNLLTVI+G AER PTL
Sbjct: 242 NGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of Spg004449 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 193.0 bits (489), Expect = 3.6e-49
Identity = 120/282 (42.55%), Postives = 160/282 (56.74%), Query Frame = 0


Query: 13  LGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKPSAVSPANDELAK 72
           +  S M  +  +F+G + + +P+AS  +    V +  +K  A  KPK  + SP       
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTM--RKTVA--KPKGPSGSP------- 60

Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFSK 132
           WYG DR  +L        E P YL GE                YG+D  GLS  PE F++
Sbjct: 61  WYGSDRVKYLGP---FSGESPSYLTGEFPG------------DYGWDTAGLSADPETFAR 120

Query: 133 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 192
            +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +
Sbjct: 121 NRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLV 180

Query: 193 ---NLIAAVIAEVVLVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQAAILKV 252
              +++A    +V+L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  A LKV
Sbjct: 181 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKV 240

Query: 253 KEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 289
           KE+KNGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Spg004449 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 192.2 bits (487), Expect = 6.1e-49
Identity = 120/282 (42.55%), Postives = 159/282 (56.38%), Query Frame = 0


Query: 13  LGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKPSAVSPANDELAK 72
           +  S M  +  +F+G +   +P+AS  +    V +  +K  A  KPK  + SP       
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTM--RKTVA--KPKGPSGSP------- 60

Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFSK 132
           WYG DR  +L        E P YL GE                YG+D  GLS  PE F++
Sbjct: 61  WYGSDRVKYLGP---FSGESPSYLTGEFPG------------DYGWDTAGLSADPETFAR 120

Query: 133 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 192
            +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +
Sbjct: 121 NRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLV 180

Query: 193 ---NLIAAVIAEVVLVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQAAILKV 252
              +++A    +V+L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  A LKV
Sbjct: 181 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKV 240

Query: 253 KEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 289
           KE+KNGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Spg004449 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 192.2 bits (487), Expect = 6.1e-49
Identity = 120/282 (42.55%), Postives = 159/282 (56.38%), Query Frame = 0


Query: 13  LGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKPSAVSPANDELAK 72
           +  S M  +  +F+G +   +P+AS  +    V +  +K  A  KPK  + SP       
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTM--RKTVA--KPKGPSGSP------- 60

Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFSK 132
           WYG DR  +L        E P YL GE                YG+D  GLS  PE F++
Sbjct: 61  WYGSDRVKYLGP---FSGESPSYLTGEFPG------------DYGWDTAGLSADPETFAR 120

Query: 133 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 192
            +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +
Sbjct: 121 NRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLV 180

Query: 193 ---NLIAAVIAEVVLVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQAAILKV 252
              +++A    +V+L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  A LKV
Sbjct: 181 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKV 240

Query: 253 KEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 289
           KE+KNGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Spg004449 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 189.9 bits (481), Expect = 3.0e-48
Identity = 114/268 (42.54%), Postives = 148/268 (55.22%), Query Frame = 0


Query: 36  ASSPVTFKTVALFGK--KPAAAP-------KPKPSAVSPANDELAKWYGPDRRIFLPDGL 95
           ASS +   + A  GK  KPAA+          + +   P     + WYG DR  +L    
Sbjct: 2   ASSTMALSSPAFAGKAVKPAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGP-- 61

Query: 96  LDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFSKYQAFELIHARWAML 155
               E P YL GE                YG+D  GLS  PE F++ +  E+IH+RWAML
Sbjct: 62  -FSGEPPSYLTGEFPG------------DYGWDTAGLSADPETFARNRELEVIHSRWAML 121

Query: 156 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI---NLIAAVIAEVV 215
           GA G + PE   + G   G EAVWFK G+ +     L+Y GN   +   +++A    +V+
Sbjct: 122 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVI 181

Query: 216 LVGGAEYYRIING---LNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAML 275
           L+G  E YR+         ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M 
Sbjct: 182 LMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMF 241

Query: 276 GFYFQAYVTGEGPVENLAKHLSDPFGNN 289
           GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 242 GFFVQAIVTGKGPLENLADHLADPVNNN 253

The following BLAST results are available for this feature:

BLAST of Spg004449 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889943.1	3.5e-155	93.40	chlorophyll a-b binding protein CP26, chloroplastic [Benincasa hispida]	[more]
KAG7037190.1	1.5e-153	92.74	Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosp...	[more]
XP_022932496.1	3.2e-153	92.74	chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita moschata]	[more]
XP_022973438.1	7.2e-153	92.08	chlorophyll a-b binding protein CP26, chloroplastic [Cucurbita maxima]	[more]
KAG6607551.1	9.4e-153	92.41	Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosp...	[more]

BLAST of Spg004449 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF89	2.8e-131	80.55	Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P12330	1.0e-53	48.51	Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica...	[more]
P27517	2.0e-52	50.22	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella ter...	[more]
P12331	8.3e-51	45.93	Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica...	[more]
P27497	8.3e-51	45.32	Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays OX=4577 GN=CAB-M9 ...	[more]

BLAST of Spg004449 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWI5	1.6e-153	92.74	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1ID20	3.5e-153	92.08	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0KXR5	2.1e-150	90.76	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A1S3CBI9	8.1e-150	90.76	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1DTI7	3.1e-149	90.76	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Spg004449 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10340.1	2.0e-132	80.55	light harvesting complex of photosystem II 5	[more]
AT1G29930.1	3.6e-49	42.55	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	6.1e-49	42.55	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	6.1e-49	42.55	chlorophyll A/B-binding protein 2	[more]
AT2G34420.1	3.0e-48	42.54	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 113..266 e-value: 3.0E-41 score: 141.6
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 80..303 e-value: 2.1E-82 score: 277.9
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..303
None	No IPR available	PANTHER	PTHR21649:SF104	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..303
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 114..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004449.1	Spg004449.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding