Spg004408 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004408
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionglycine-rich cell wall structural protein 1
Locationscaffold9: 11296284 .. 11297825 (-)
RNA-Seq ExpressionSpg004408
SyntenySpg004408
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCCAAGCCACTGGTCAAACTGACTATTGCTGACCCTGTCAGTTTGCAGAGATTCTTGCATAAGCTGCCAGTGGTTAGTGTTAAGTCTGTATGTTAGTTTAGCACTCTAATCAGTTAGGAATTGGTTATTGAGAACTCACCAATTGCCTGGGCACATGTTGGTATCCTTCTTGCATAGATTGCTGCTGTACTTTCGAACAATATAAAGATAAACTCAACAGTGTTCTAGCCTAATGTGTGGAGCTTGGTTAATAGGAATACTCCATCTTTCTTCCTTTTTCCTCTGCAACTTCTCTCCTTTACCAAACATGTGCGGCACATTAGAGGTGTAATGTGGAATTGATACAGACATATCTTTTCTTTGATCTTATTACTGAATCATTGAGGTACAGATTACAATGAGGGTTAGCTGTTGTCCACATTGTAAGAATGGTGGATAAAGCCCCTATTTTGCAAGCTCTTGAAAGCCATTGTGTGCTAGTGAGATAGACATTTGTTTCTCAGCTGGCTTTAAAGTACTAGCTGTGACGTGCTATTACCACTGGCACTATGAAGTGAAAGCTCGTCTATGAAGTTGAATTCCATTGTTTTTCCCCTTCCAAATCACTAGTGCTTTCTTGTTCAGGTTCGACAATACACTACTTTGTCCTTGATTGTCTGAGTGAAGTCATAGAAACTGACAGTCTGATTGTCCATATTATTGAACTACCGTATGTTTTACTATCTTGGTTACATTAAGGATGGTTAGACTAATAAATCCTTTTAGAAATCAATATTGTAAGTTGTAATAACAGGACTAAAGTAACGTTTTTCTAAGATGTAATAATTGAAAGCTGAACAGTAAAATTAGGAATTGACTGGTGGCATTTACAAGATAGCTTAAACTGTCTTGTTCAAAGCTTAATTCGACTTTTCATATGTAAACTGTGCTGCTATAGAACTTCGATATTTTGACATCAAGAAACATTTCTTGATTTCCAATTTTTCTTGTTTTCAATAGGGATGAGATTGGTGCGCTTGTTGACGAGCTTGTCCTCAATACGAGGAGGCTTATCCGAGCTACTTCAAGGGAGATTGACAAGTGGAAAAGATGAGATGACTTATCTACTTTGACATTGTACAAGTCCAATCCCCTCCCCCCATCAATTCATTAGAAAGAACCAATCAAAATCATAGAAGAAAGAACCATGCTGGTTGTCTATATGGTGTTATTAGTCTGTGGCTTTGTATAGCCAAATTTCATATGCAACTGTTTGTTAGATGTATTTAGTTGCTCTAAATCATCATGTGCAGTGGGTTTTGAGCAGTCACAAAATGTTGAATACTTGATGAATTAGTTTAGGTGGTCTCTAGAAGGCTGATTTATCTTGTCCATACTGCAGAAATAGCTTTTCATTAGAGGATATACTTGTTTTATTTTAAGCTAAACGCTATCAACTGGAAGGTGCATCGAGCTAAATATTCAAGCAATAGAGATAATTTGATTTTCTTCATTGGTGTTGACAAGCTGATAATTTGAAGAACTTATTGGAGGAGG

mRNA sequence

ATGCTTCCCAAGCCACTGGTCAAACTGACTATTGCTGACCCTGTCAGTTTGCAGAGATTCTTGCATAAGCTGCCAGTGGTTAGTGTTAAGTCTATTACAATGAGGGTTAGCTGTTGTCCACATTGTTCGACAATACACTACTTTGTCCTTGATTGTCTGAGTGAAGTCATAGAAACTGACAGTCTGATTGTCCATATTATTGAACTACCGGATGAGATTGGTGCGCTTGTTGACGAGCTTGTCCTCAATACGAGGAGGCTTATCCGAGCTACTTCAAGGGAGATTGACAAGTGGAAAAGATGA

Coding sequence (CDS)

ATGCTTCCCAAGCCACTGGTCAAACTGACTATTGCTGACCCTGTCAGTTTGCAGAGATTCTTGCATAAGCTGCCAGTGGTTAGTGTTAAGTCTATTACAATGAGGGTTAGCTGTTGTCCACATTGTTCGACAATACACTACTTTGTCCTTGATTGTCTGAGTGAAGTCATAGAAACTGACAGTCTGATTGTCCATATTATTGAACTACCGGATGAGATTGGTGCGCTTGTTGACGAGCTTGTCCTCAATACGAGGAGGCTTATCCGAGCTACTTCAAGGGAGATTGACAAGTGGAAAAGATGA

Protein sequence

MLPKPLVKLTIADPVSLQRFLHKLPVVSVKSITMRVSCCPHCSTIHYFVLDCLSEVIETDSLIVHIIELPDEIGALVDELVLNTRRLIRATSREIDKWKR
Homology
[Close]
BLAST of Spg004408 vs. NCBI nr
Match: XP_022156030.1 (glycine-rich cell wall structural protein 1 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-05
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           DEIGALVDELV+NTRRLIRATSREIDKW+R
Sbjct: 112 DEIGALVDELVVNTRRLIRATSREIDKWRR 141

[Close]
BLAST of Spg004408 vs. NCBI nr
Match: XP_016902400.1 (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo] >XP_016902401.1 PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-05
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           D+IGALVD+LVLNT+RLIRATSREIDKWKR
Sbjct: 115 DDIGALVDDLVLNTKRLIRATSREIDKWKR 144

[Close]
BLAST of Spg004408 vs. NCBI nr
Match: XP_042976365.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Carya illinoinensis] >KAG2710052.1 hypothetical protein I3760_04G006900 [Carya illinoinensis] >KAG6656223.1 hypothetical protein CIPAW_04G007300 [Carya illinoinensis] >KAG6715694.1 hypothetical protein I3842_04G007200 [Carya illinoinensis] >KAG7981656.1 hypothetical protein I3843_04G006800 [Carya illinoinensis])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 25/30 (83.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           DEIGALVDELV+NT++LIRATSRE+DKW+R
Sbjct: 106 DEIGALVDELVINTKKLIRATSREVDKWRR 135

[Close]
BLAST of Spg004408 vs. NCBI nr
Match: XP_004141514.1 (glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN52595.1 hypothetical protein Csa_008740 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 26/30 (86.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           D+IGALVD+LVLNT+RLIRATS+EIDKWKR
Sbjct: 115 DDIGALVDDLVLNTKRLIRATSKEIDKWKR 144

[Close]
BLAST of Spg004408 vs. NCBI nr
Match: KAB1211023.1 (hypothetical protein CJ030_MR6G019586 [Morella rubra] >KAB1211129.1 hypothetical protein CJ030_MR6G018115 [Morella rubra])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 25/30 (83.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           DE+GALVDELV+NT++LIRATSREIDKW+R
Sbjct: 103 DEVGALVDELVINTKKLIRATSREIDKWRR 132

[Close]
BLAST of Spg004408 vs. ExPASy TrEMBL
Match: A0A6J1DP59 (glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111023001 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           DEIGALVDELV+NTRRLIRATSREIDKW+R
Sbjct: 112 DEIGALVDELVVNTRRLIRATSREIDKWRR 141

[Close]
BLAST of Spg004408 vs. ExPASy TrEMBL
Match: A0A1S4E347 (glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103498610 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           D+IGALVD+LVLNT+RLIRATSREIDKWKR
Sbjct: 115 DDIGALVDDLVLNTKRLIRATSREIDKWKR 144

[Close]
BLAST of Spg004408 vs. ExPASy TrEMBL
Match: A0A6A1VE47 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G018115 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-05
Identity = 25/30 (83.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           DE+GALVDELV+NT++LIRATSREIDKW+R
Sbjct: 103 DEVGALVDELVINTKKLIRATSREIDKWRR 132

[Close]
BLAST of Spg004408 vs. ExPASy TrEMBL
Match: A0A5N6R0G3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008025 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-05
Identity = 25/30 (83.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           DEIGALVDELV+NT++LIRATSRE+DKW+R
Sbjct: 130 DEIGALVDELVINTKKLIRATSREVDKWRR 159

[Close]
BLAST of Spg004408 vs. ExPASy TrEMBL
Match: A0A0A0KSM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G646690 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-05
Identity = 26/30 (86.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKWKR 101
           D+IGALVD+LVLNT+RLIRATS+EIDKWKR
Sbjct: 115 DDIGALVDDLVLNTKRLIRATSKEIDKWKR 144

[Close]
BLAST of Spg004408 vs. TAIR 10
Match: AT4G10330.1 (glycine-rich protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04
Identity = 15/28 (53.57%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 71  DEIGALVDELVLNTRRLIRATSREIDKW 99
           +E+ +L+DELV++T++L++AT+ EIDKW
Sbjct: 101 NEVDSLIDELVVSTKKLVKATTNEIDKW 128

The following BLAST results are available for this feature:
BLAST of Spg004408 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156030.12.8e-0593.33glycine-rich cell wall structural protein 1 [Momordica charantia][more]
XP_016902400.16.3e-0590.00PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo] >XP_016902... [more]
XP_042976365.11.4e-0483.33protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Carya illinoinensis] >KAG2... [more]
XP_004141514.11.4e-0486.67glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN52595.1 hypoth... [more]
KAB1211023.11.4e-0483.33hypothetical protein CJ030_MR6G019586 [Morella rubra] >KAB1211129.1 hypothetical... [more]
BLAST of Spg004408 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004408 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DP591.4e-0593.33glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LO... [more]
A0A1S4E3473.1e-0590.00glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103498... [more]
A0A6A1VE476.8e-0583.33Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G018115 PE=4 SV=1[more]
A0A5N6R0G36.8e-0583.33Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008025 PE=4 SV=1[more]
A0A0A0KSM86.8e-0586.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G646690 PE=4 SV=1[more]
BLAST of Spg004408 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10330.14.4e-0453.57glycine-rich protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004408.1Spg004408.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003724 RNA helicase activity