Spg004262 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004262
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transcription elongation factor 1 homolog
Location	scaffold6: 5914235 .. 5916301 (-)
RNA-Seq Expression	Spg004262
Synteny	Spg004262

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATAAATACCGGCCCTCCCTTCAATTTCATTCCTCATTCTTCAATTCGGCCAGCGAGACGATTAACAACAGCGAACGATAATCCCTCCCAATTTGATCAGCGATCAGGTACGACTTCTTTGTTCTTTCTTCTCTTAGGGTTCGTAGTTCTAGGGTTCTTATTAAGCTTTCAATTGGCAGATTATGTGCTTTTTTCTTACTGCCTGCAACCTAGGGTTCTACTTTTTTGTCGTTTCCTGTGGTGGACTTCCCGTTCTTGTGCAAAATTGGACGTTCTTTGCGTTTTTCGTTTCGGTTGGTTATTATTTGATTTCTATCTGTTTCTTTTCTTGGTGGTTTTGAGTAATTGGTGGCGTTGTGCTGCTCTTATTGAATTTGGGAGACATCGATTGAGTAAATTTTTGCCATTCCATCCGTGGCAAGAATGGAATTTTCCGGGGATTTTAGTTGTTATTTGCTGTTGATTCTTTCCAAAGTCGATGAATTTCTATGATTTGGTAGGGAAGTGAAATTTGCATTTATGCTACGTTTTTTCTTAATTGCGGTTATGCATTGAATATGAATGTTTTGGAATAATGAGGACGGGGGTGAATCTGAGTTTTAATGTATGGGGATTGGTAGCTTATTGACTACTTGATATGCTCTAAAGATCTAGTCTTTATATATTTTCAAGTTTCATTTCAAACTCTCATATTGAAGACTGATTGATGGTGATATTGTGTATGGATGTGGACAGCCTCACCACAAGAAATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTGTTTAGCTGCCCCTTCTGCAATCATGGGACCAGTGTGGAATGCCGCATGTAAGTTTGCATTCTGTTCCTTTGGGGTTCTAGTAACCCTTGAGTGAGGGACTTGTTAGAAGGATTTTATATTTTGAGCCACAATGGAAAAAGCTGGAACAGTTGAATATGTATAATATCATTAACTTGTCTCATGGATTAGTCTCTCTGTCTAGGTGCCTCATTTGTTATGCATTGTGACGAGGGTGTTTGTATGGTTTTAGTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGGTGTTCTCTTCAAATCCTACGAGTGTTTGTTTTGTTTTCATTTCACTATCTGTTGTGTGTGTTTTTATTAACGCTTTGTATTATGATGTGATTGAAGCAATTTGGGAGTTTTTTAAGATTTTTTTTTAATGGAGAATTTATATTCTACTGGAACAGTTTTTGTTTGGTCTGAACTCTAAATAGGTGGGAACTTTCCATCATGACTAGATTTTCATTCCGGTTGTAGGGAAGTTTATTAAATAAAAAAGTGTCATCATGTATGATTTAGGTCAATCTGTGTGTAATCCAGGGCTTTCAAATCATTCTCATTAGTTTGTCTGTGGATAAATTAAGTTGCACTAATATTTCATTTCTTTTGTTTTGCAGCCTTGACTGAGCCAATCGACATGTAAGTAAAATTGAACGCAGTTCTTGTCAATATTGATGCTCTATAGTGCTTCATTAACGTGATGTTTGTTCTTTTGATCAGATATAGTGAATGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAGGGAGGGGGGGGATCAATTGGGGAAGGTTGACGTTCTTAGTTTCTCCATGGAAAAGAAGCTGGCTAGTTGGAAGTTCCTTTTATGAATCTAAATTAAGAGGGGGTCTTATTGGTAGGTATAACAAACACTCTTACCCTCATAGCAGTATAGACAAGCATGTATGTACAGTAGTATGTTGTAACGGCTTGCACTTTGACTTGATCACGAATTCTACGTACCTGTAATTTTTCTTTCCTGAATTTTGAACCAAAAGGTAAAATGTTAATGCGAATTTTCTTCTATGTCCGGATGGAGAGTGGGGTCCTGATCCCCATTCCTTCATGATTTCGAATAATTCGATCTTTTTGTAAATGAAATAGTAAAGGATGTTTTATTTTATCTTTTCCTTTTTTTTTT

mRNA sequence

ATGTCTATAAATACCGGCCCTCCCTTCAATTTCATTCCTCATTCTTCAATTCGGCCAGCGAGACGATTAACAACAGCGAACGATAATCCCTCCCAATTTGATCAGCGATCAGCCTCACCACAAGAAATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTGTTTAGCTGCCCCTTCTGCAATCATGGGACCAGTGTGGAATGCCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGGTGTTCTCTTCAAATCCTACGAGTCCTTGACTGAGCCAATCGACATATATAGTGAATGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG

Coding sequence (CDS)

ATGTCTATAAATACCGGCCCTCCCTTCAATTTCATTCCTCATTCTTCAATTCGGCCAGCGAGACGATTAACAACAGCGAACGATAATCCCTCCCAATTTGATCAGCGATCAGCCTCACCACAAGAAATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTGTTTAGCTGCCCCTTCTGCAATCATGGGACCAGTGTGGAATGCCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGGTGTTCTCTTCAAATCCTACGAGTCCTTGACTGAGCCAATCGACATATATAGTGAATGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG

Protein sequence

MSINTGPPFNFIPHSSIRPARRLTTANDNPSQFDQRSASPQEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

Homology

[Close]

BLAST of Spg004262 vs. NCBI nr
Match: XP_038896920.1 (transcription elongation factor 1 homolog [Benincasa hispida])

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-43
Identity = 98/138 (71.01%), Postives = 106/138 (76.81%), Query Frame = 0


Query: 1   MSINTGPPFNFIPHSSIRPARRLTTANDNPSQFDQRSASPQEMGKRKSRAKPPPKKRMDK 60
           MSIN     NFI +SSIRPA +L       +       S Q+MGKRKSRAKPPPKKRMDK
Sbjct: 1   MSINITTTSNFIFYSSIRPAIQLQLR----TTISPIWISDQDMGKRKSRAKPPPKKRMDK 60

Query: 61  LDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIY 120
           LDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQE FSTTIT        +L+E ID+Y
Sbjct: 61  LDTVFSCPFCNHGTSVECRIDLKNLIGEASCRICQESFSTTIT--------ALSEAIDVY 120

Query: 121 SEWIDECERVNNLEDDAA 139
           SEWIDECERVNNLEDDAA
Sbjct: 121 SEWIDECERVNNLEDDAA 126

[Close]

BLAST of Spg004262 vs. NCBI nr
Match: XP_022142747.1 (transcription elongation factor 1 homolog [Momordica charantia])

HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40
Identity = 85/96 (88.54%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA 139
           T        +LTEPIDIYSEWIDECERVNNLE+D A
Sbjct: 61  T--------ALTEPIDIYSEWIDECERVNNLEEDDA 88

[Close]

BLAST of Spg004262 vs. NCBI nr
Match: XP_010090451.1 (transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509.1 hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40
Identity = 85/96 (88.54%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA 139
           T        +LTEPIDIYSEWIDECERVNNLEDD A
Sbjct: 61  T--------ALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Spg004262 vs. NCBI nr
Match: KAB1222011.1 (hypothetical protein CJ030_MR2G018503 [Morella rubra])

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-40
Identity = 83/96 (86.46%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRSKPPPKKRMDKLDTVFSCPFCNHGTSIECRIDMKNLIGEASCRICQESFSTTI 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA 139
           T        +LTEPIDIYSEWIDECERVNNLEDD A
Sbjct: 61  T--------ALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Spg004262 vs. NCBI nr
Match: PON57115.1 (Transcription elongation factor [Trema orientale] >PON77937.1 Transcription elongation factor [Parasponia andersonii])

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-40
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA 139
           T        +LTEPIDIYSEWIDECERVNNLE+DAA
Sbjct: 61  T--------ALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of Spg004262 vs. ExPASy Swiss-Prot
Match: Q8LHP0 (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-40
Identity = 79/94 (84.04%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE FSTT+
Sbjct: 1   MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDD 137
                    +LTEPIDIYSEWIDECERVNN+EDD
Sbjct: 61  --------NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of Spg004262 vs. ExPASy Swiss-Prot
Match: Q8LEF3 (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-35
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDD 137
           T        +LTE IDIYSEWIDECERVN  EDD
Sbjct: 61  T--------ALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Spg004262 vs. ExPASy Swiss-Prot
Match: P36053 (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-18
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC + F T I
Sbjct: 1   MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNN 133
                    SL++P+D+YS+W D  E VN+
Sbjct: 61  --------NSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of Spg004262 vs. ExPASy Swiss-Prot
Match: A4IFR3 (Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-18
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTT 102
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 103 ITGVLFKSYESLTEPIDIYSEWIDECERVN 132
           IT         L+EP+D+YS+WID CE  N
Sbjct: 61  IT--------YLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Spg004262 vs. ExPASy Swiss-Prot
Match: P60002 (Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-18
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTT 102
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 103 ITGVLFKSYESLTEPIDIYSEWIDECERVN 132
           IT         L+EP+D+YS+WID CE  N
Sbjct: 61  IT--------YLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Spg004262 vs. ExPASy TrEMBL
Match: A0A6J1CNR1 (Transcription elongation factor 1 homolog OS=Momordica charantia OX=3673 GN=LOC111012788 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 85/96 (88.54%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA 139
           T        +LTEPIDIYSEWIDECERVNNLE+D A
Sbjct: 61  T--------ALTEPIDIYSEWIDECERVNNLEEDDA 88

[Close]

BLAST of Spg004262 vs. ExPASy TrEMBL
Match: W9R774 (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 85/96 (88.54%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA 139
           T        +LTEPIDIYSEWIDECERVNNLEDD A
Sbjct: 61  T--------ALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Spg004262 vs. ExPASy TrEMBL
Match: A0A2P5DXC0 (Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_022910 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.1e-40
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA 139
           T        +LTEPIDIYSEWIDECERVNNLE+DAA
Sbjct: 61  T--------ALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of Spg004262 vs. ExPASy TrEMBL
Match: A0A6A1W9X5 (Transcription elongation factor 1 homolog OS=Morella rubra OX=262757 GN=CJ030_MR2G018503 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.1e-40
Identity = 83/96 (86.46%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRSKPPPKKRMDKLDTVFSCPFCNHGTSIECRIDMKNLIGEASCRICQESFSTTI 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA 139
           T        +LTEPIDIYSEWIDECERVNNLEDD A
Sbjct: 61  T--------ALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Spg004262 vs. ExPASy TrEMBL
Match: A0A2P5C7Z2 (Transcription elongation factor 1 homolog OS=Trema orientale OX=63057 GN=TorRG33x02_294290 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.1e-40
Identity = 83/96 (86.46%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA 139
           T        +LTEPIDIYSEWIDECERVNNLE+DAA
Sbjct: 61  T--------ALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of Spg004262 vs. TAIR 10
Match: AT5G46030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-36
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 43  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 102
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 103 TGVLFKSYESLTEPIDIYSEWIDECERVNNLEDD 137
           T        +LTE IDIYSEWIDECERVN  EDD
Sbjct: 61  T--------ALTEAIDIYSEWIDECERVNTAEDD 86

The following BLAST results are available for this feature:

BLAST of Spg004262 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896920.1	4.7e-43	71.01	transcription elongation factor 1 homolog [Benincasa hispida]	[more]
XP_022142747.1	2.9e-40	88.54	transcription elongation factor 1 homolog [Momordica charantia]	[more]
XP_010090451.1	2.9e-40	88.54	transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509...	[more]
KAB1222011.1	8.4e-40	86.46	hypothetical protein CJ030_MR2G018503 [Morella rubra]	[more]
PON57115.1	8.4e-40	86.46	Transcription elongation factor [Trema orientale] >PON77937.1 Transcription elon...	[more]

BLAST of Spg004262 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LHP0	2.3e-40	84.04	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8LEF3	1.7e-35	76.60	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
P36053	1.9e-18	47.78	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
A4IFR3	4.2e-18	48.89	Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV...	[more]
P60002	4.2e-18	48.89	Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 ...	[more]

BLAST of Spg004262 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNR1	1.4e-40	88.54	Transcription elongation factor 1 homolog OS=Momordica charantia OX=3673 GN=LOC1...	[more]
W9R774	1.4e-40	88.54	Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0...	[more]
A0A2P5DXC0	4.1e-40	86.46	Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=Pa...	[more]
A0A6A1W9X5	4.1e-40	86.46	Transcription elongation factor 1 homolog OS=Morella rubra OX=262757 GN=CJ030_MR...	[more]
A0A2P5C7Z2	4.1e-40	86.46	Transcription elongation factor 1 homolog OS=Trema orientale OX=63057 GN=TorRG33...	[more]

BLAST of Spg004262 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46030.1	1.2e-36	76.60	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701,...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	2.20.25.190		coord: 58..132 e-value: 1.2E-24 score: 88.2
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 44..128 e-value: 7.4E-26 score: 90.0
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 29..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..39
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 43..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004262.1	Spg004262.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0008023	transcription elongation factor complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II complex binding
molecular_function	GO:0003746	translation elongation factor activity