Spg004156 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGTAGGCAAAAAAAGTCTCATTCTTCCTTCTCGATCTTCGGCCGCCTTTTCAAATCCAAAAGGAATGGAAAAGGAGATCATTATGACCATGATGGTTCTCGGAACGAAGTAAGATATGCAGACAAAGTGTTGTTGAGTGATGAGGAAAGTGCTCACCAATGGATTGTCGAGCTTGGTCTTGATAGAAAAGCTAAAGACTACATTGATAGGTTCTATGAGAACCGTGTCGTCGAAACCGAACGCCAAACTGTTACCATTCTTCCTTTTGAAACTAGGCCTGAGATTTAA ATGGGAGGTAGGCAAAAAAAGTCTCATTCTTCCTTCTCGATCTTCGGCCGCCTTTTCAAATCCAAAAGGAATGGAAAAGGAGATCATTATGACCATGATGGTTCTCGGAACGAAGTAAGATATGCAGACAAAGTGTTGTTGAGTGATGAGGAAAGTGCTCACCAATGGATTGTCGAGCTTGGTCTTGATAGAAAAGCTAAAGACTACATTGATAGGTTCTATGAGAACCGTGTCGTCGAAACCGAACGCCAAACTGTTACCATTCTTCCTTTTGAAACTAGGCCTGAGATTTAA ATGGGAGGTAGGCAAAAAAAGTCTCATTCTTCCTTCTCGATCTTCGGCCGCCTTTTCAAATCCAAAAGGAATGGAAAAGGAGATCATTATGACCATGATGGTTCTCGGAACGAAGTAAGATATGCAGACAAAGTGTTGTTGAGTGATGAGGAAAGTGCTCACCAATGGATTGTCGAGCTTGGTCTTGATAGAAAAGCTAAAGACTACATTGATAGGTTCTATGAGAACCGTGTCGTCGAAACCGAACGCCAAACTGTTACCATTCTTCCTTTTGAAACTAGGCCTGAGATTTAA MGGRQKKSHSSFSIFGRLFKSKRNGKGDHYDHDGSRNEVRYADKVLLSDEESAHQWIVELGLDRKAKDYIDRFYENRVVETERQTVTILPFETRPEI Homology
BLAST of Spg004156 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus]) HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22 Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 0
BLAST of Spg004156 vs. NCBI nr
Match: KAG6588556.1 (hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 107.1 bits (266), Expect = 8.8e-20 Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 0
BLAST of Spg004156 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa]) HSP 1 Score: 106.3 bits (264), Expect = 1.5e-19 Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 0
BLAST of Spg004156 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus]) HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19 Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 0
BLAST of Spg004156 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_005148 [Cucumis sativus]) HSP 1 Score: 105.5 bits (262), Expect = 2.6e-19 Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0
BLAST of Spg004156 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 7.1e-23 Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 0
BLAST of Spg004156 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22 Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 0
BLAST of Spg004156 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 7.3e-20 Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 0
BLAST of Spg004156 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 9.5e-20 Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 0
BLAST of Spg004156 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19 Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0
BLAST of Spg004156 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 58.5 bits (140), Expect = 3.4e-09 Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 0
BLAST of Spg004156 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05 Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
|