Spg004144 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004144
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	poly(A)-specific ribonuclease PARN-like
Location	scaffold9: 14505892 .. 14507216 (+)
RNA-Seq Expression	Spg004144
Synteny	Spg004144

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAGAAAACGAAATTTGAATAAAAGCTTAATGGGAAACTATGGCGTCTCGGTTCTCCTTTCTCCAGTTGCAAGACACTTGTTTAGTACCAGTACCAGTCAATGGAGTGTTAGGCAAATTCGCAACTCCAACTTCCATGGCTGTTTAGAGGATCAGAAGAACCACATCTCCGACTCCGACTTCCTCGCCCCCTCTCTGCAGAACACGGGTTCTTCTTCCTTTCCTTGGCACCGCCTTCAGCCCTTAGACACCTACGAGAAGTACACTGCCGAGAAGTTTCAGATGCTTCAATTCGCTCTCTGCCTCTTCGCCATTAGGGAATCCGAGCTGATTAGCTGATTGCCCGTCTGTAAGTCCCGCCGCCGCTTATCTTGATGTTCGAATTTTTGGAGTTTTGAACGCTGGGGCAGGGGTCGGGGGTTTGGAGTTTCTTTATGTTGATGAATTTTTCTGCACTTGCAATGGATTCGGTTGCTTCTTGATATGTAATTGATGTTGAAAGAGTAAATGAAAGCTGGAATTGAGAGTCGTGATGAATAACAAATAGTTTGCAATATTCATATATGGGTATAATTTGTAATGGGAAGTTCGATGGCCTCTAACTGATATTTCGATAATGACTTTTACTTTTGGTTTTCCTGTTCATCATCATTTGGGGGTTGTTACTGATTTGATTAATGAAATTTTATTTCTATAATATATGCTTTCTCGTTACATGCATCTTAGGCTATTGGCGTACCATCTGTAATTCGTGTTCTTTGCCTGTGAATTACGACTTTCAAATTAAAACTCTGACATTTTATTTCATGCTTGTTGGTGTCGTGACAATTTGGATTTGTTTCCTTCAATGGTGTAGGTACAACTTTCACTTATTCCCCAGAGATGAATTGAACATTGGGATGCCTTCTGACATGAAAACATCCATGGCTCGTGAAGGTTTTGACTTTGATGCTTGCATATATGATGGTAAGCCATATTATGGACTATTTACGTTGGTTCAAACTCACTGGTCACTAGGCTTGAGATTCTAAGAGGCACTATAACTGTATATAGAGGAGGAATTTTACAACCCAGATTTCCAATCCCTAGACCACCTTCACTGTGAGGTTTTGACATAGAACTCAAGTTAACTGAGATTGAACTTGTCTACAAAAGCATAGGATTAATTTGAGGGGCATTGAAAGGAAAGAAGAAATCCCCAAGTTCTTTCTCAATCTCCCTACCCCTGGAAATTATGTTCCCATTCTCCACCTCAAGAGAAGATAAATTAAGTTCCCAAGTCTCCTAAAATAGCAACCCCATGAAATAAGATGTTTCACAATTAC

mRNA sequence

CAGAGAAAACGAAATTTGAATAAAAGCTTAATGGGAAACTATGGCGTCTCGGTTCTCCTTTCTCCAGTTGCAAGACACTTGTTTAGTACCAGTACCAGTCAATGGAGTGTTAGGCAAATTCGCAACTCCAACTTCCATGGCTGTTTAGAGGATCAGAAGAACCACATCTCCGACTCCGACTTCCTCGCCCCCTCTCTGCAGAACACGGGTTCTTCTTCCTTTCCTTGGCACCGCCTTCAGCCCTTAGACACCTACGAGAAGTACACTGCCGAGAAGTACAACTTTCACTTATTCCCCAGAGATGAATTGAACATTGGGATGCCTTCTGACATGAAAACATCCATGGCTCGTGAAGGTTTTGACTTTGATGCTTGCATATATGATGGTAAGCCATATTATGGACTATTTACGTTGGTTCAAACTCACTGGTCACTAGGCTTGAGATTCTAA

Coding sequence (CDS)

CAGAGAAAACGAAATTTGAATAAAAGCTTAATGGGAAACTATGGCGTCTCGGTTCTCCTTTCTCCAGTTGCAAGACACTTGTTTAGTACCAGTACCAGTCAATGGAGTGTTAGGCAAATTCGCAACTCCAACTTCCATGGCTGTTTAGAGGATCAGAAGAACCACATCTCCGACTCCGACTTCCTCGCCCCCTCTCTGCAGAACACGGGTTCTTCTTCCTTTCCTTGGCACCGCCTTCAGCCCTTAGACACCTACGAGAAGTACACTGCCGAGAAGTACAACTTTCACTTATTCCCCAGAGATGAATTGAACATTGGGATGCCTTCTGACATGAAAACATCCATGGCTCGTGAAGGTTTTGACTTTGATGCTTGCATATATGATGGTAAGCCATATTATGGACTATTTACGTTGGTTCAAACTCACTGGTCACTAGGCTTGAGATTCTAA

Protein sequence

QRKRNLNKSLMGNYGVSVLLSPVARHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYEKYTAEKYNFHLFPRDELNIGMPSDMKTSMAREGFDFDACIYDGKPYYGLFTLVQTHWSLGLRF

Homology

[Close]

BLAST of Spg004144 vs. NCBI nr
Match: XP_038899638.1 (poly(A)-specific ribonuclease PARN-like isoform X1 [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-36
Identity = 86/138 (62.32%), Postives = 93/138 (67.39%), Query Frame = 0


Query: 30  TSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE--- 89
           T+TSQWSVRQ+R+S+FHGCL + KNHISDSDF+A SLQNTGSSSFPWHRLQP DTY+   
Sbjct: 16  TTTSQWSVRQVRSSDFHGCLGELKNHISDSDFIALSLQNTGSSSFPWHRLQPFDTYDTAY 75

Query: 90  ---KYTAEK----------------------YNFHLFPRDELNIGMPS-------DMKTS 133
              KY AEK                      YNFHLFPRDELNIGMPS          TS
Sbjct: 76  CKTKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLTS 135

[Close]

BLAST of Spg004144 vs. NCBI nr
Match: XP_038899639.1 (poly(A)-specific ribonuclease PARN-like isoform X2 [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-36
Identity = 86/138 (62.32%), Postives = 93/138 (67.39%), Query Frame = 0


Query: 30  TSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE--- 89
           T+TSQWSVRQ+R+S+FHGCL + KNHISDSDF+A SLQNTGSSSFPWHRLQP DTY+   
Sbjct: 16  TTTSQWSVRQVRSSDFHGCLGELKNHISDSDFIALSLQNTGSSSFPWHRLQPFDTYDTAY 75

Query: 90  ---KYTAEK----------------------YNFHLFPRDELNIGMPS-------DMKTS 133
              KY AEK                      YNFHLFPRDELNIGMPS          TS
Sbjct: 76  CKTKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLTS 135

[Close]

BLAST of Spg004144 vs. NCBI nr
Match: XP_016903395.1 (PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-34
Identity = 84/150 (56.00%), Postives = 94/150 (62.67%), Query Frame = 0


Query: 25  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDT 84
           R L++T+T QWS++Q+RNSNFHGCL D KNHISDSDF+A  LQ TGSSSFPWHR QP DT
Sbjct: 12  RRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSSFPWHRPQPFDT 71

Query: 85  YE------KYTAEK----------------------YNFHLFPRDELNIGMPS------- 140
            +      KY AEK                      YNFHLFPRDELNIGMPS       
Sbjct: 72  LDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNIGMPSYSFSCQV 131

[Close]

BLAST of Spg004144 vs. NCBI nr
Match: XP_023547854.1 (poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-34
Identity = 85/143 (59.44%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 25  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDT 84
           R    T+T+Q SVRQIRNS+F+GCL D KNHISDSDF+A SLQNTGSSSFPWHRLQ  DT
Sbjct: 12  RRRLHTATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDT 71

Query: 85  YE------KYTAEK----------------------YNFHLFPRDELNIGMPS------- 133
           Y+      KY AEK                      YNFHLFPRD+LNIGMPS       
Sbjct: 72  YDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQV 131

[Close]

BLAST of Spg004144 vs. NCBI nr
Match: XP_023547855.1 (poly(A)-specific ribonuclease PARN-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-34
Identity = 85/143 (59.44%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 25  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDT 84
           R    T+T+Q SVRQIRNS+F+GCL D KNHISDSDF+A SLQNTGSSSFPWHRLQ  DT
Sbjct: 12  RRRLHTATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDT 71

Query: 85  YE------KYTAEK----------------------YNFHLFPRDELNIGMPS------- 133
           Y+      KY AEK                      YNFHLFPRD+LNIGMPS       
Sbjct: 72  YDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQV 131

[Close]

BLAST of Spg004144 vs. ExPASy Swiss-Prot
Match: Q8W4C3 (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g25430 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-23
Identity = 61/148 (41.22%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 20  LSPVARHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRL 79
           +S  A +  + +  +WSV+Q++ SNFH  L++ +  I  SDF+A SLQNTGS +  WHR+
Sbjct: 9   ISATAGNTKTLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRV 68

Query: 80  QPLDTYE------KYTAEK----------------------YNFHLFPRDELNIGMPS-- 133
             +DT +      KY AE+                      YNFHLFPRDEL  GMPS  
Sbjct: 69  SAIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYS 128

[Close]

BLAST of Spg004144 vs. ExPASy Swiss-Prot
Match: Q9LG26 (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 40/141 (28.37%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 29  STSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE-- 88
           +++T+ + ++ +  SNF   L D ++ +  +DF+A  L+ TG +S PW      D Y+  
Sbjct: 30  ASATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVR 89

Query: 89  ----KYTAEKY------------------------NFHLFPRDELNIGMPSD----MKTS 133
               K +AEK+                        NF +FPR EL    P+       TS
Sbjct: 90  YLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTS 149

[Close]

BLAST of Spg004144 vs. ExPASy TrEMBL
Match: A0A1S4E5Z5 (poly(A)-specific ribonuclease PARN-like OS=Cucumis melo OX=3656 GN=LOC103503081 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.5e-35
Identity = 84/150 (56.00%), Postives = 94/150 (62.67%), Query Frame = 0


Query: 25  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDT 84
           R L++T+T QWS++Q+RNSNFHGCL D KNHISDSDF+A  LQ TGSSSFPWHR QP DT
Sbjct: 12  RRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIAFFLQRTGSSSFPWHRPQPFDT 71

Query: 85  YE------KYTAEK----------------------YNFHLFPRDELNIGMPS------- 140
            +      KY AEK                      YNFHLFPRDELNIGMPS       
Sbjct: 72  LDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNIGMPSYSFSCQV 131

[Close]

BLAST of Spg004144 vs. ExPASy TrEMBL
Match: A0A6J1GP80 (poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456191 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 6.1e-34
Identity = 84/143 (58.74%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 25  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDT 84
           R    T+T+Q SVRQIRN++F+GCL D KNHISDSDF+A SLQNTGSSSFPWHRLQ  DT
Sbjct: 12  RRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDT 71

Query: 85  YE------KYTAEK----------------------YNFHLFPRDELNIGMPS------- 133
           Y+      KY AEK                      YNFHLFPRD+LNIGMPS       
Sbjct: 72  YDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQV 131

[Close]

BLAST of Spg004144 vs. ExPASy TrEMBL
Match: A0A6J1GQJ8 (poly(A)-specific ribonuclease PARN-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456191 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 6.1e-34
Identity = 84/143 (58.74%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 25  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDT 84
           R    T+T+Q SVRQIRN++F+GCL D KNHISDSDF+A SLQNTGSSSFPWHRLQ  DT
Sbjct: 12  RRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSSFPWHRLQSFDT 71

Query: 85  YE------KYTAEK----------------------YNFHLFPRDELNIGMPS------- 133
           Y+      KY AEK                      YNFHLFPRD+LNIGMPS       
Sbjct: 72  YDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNIGMPSYSFSCQV 131

[Close]

BLAST of Spg004144 vs. ExPASy TrEMBL
Match: A0A5A7V1F6 (Poly(A)-specific ribonuclease PARN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00470 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 8.0e-34
Identity = 81/143 (56.64%), Postives = 91/143 (63.64%), Query Frame = 0


Query: 25  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDT 84
           R L++T+T QWS++Q+RNSNFHGCL D KNHISDSDF+A SLQ TGSSSFPWHR QP DT
Sbjct: 12  RRLYTTTTDQWSIKQVRNSNFHGCLGDLKNHISDSDFIALSLQRTGSSSFPWHRPQPFDT 71

Query: 85  YE------KYTAEK----------------------YNFHLFPRDELNIGMPS------- 133
            +      KY AEK                      YNFHLFPRDELNIGMPS       
Sbjct: 72  LDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNIGMPSYSFSCQV 131

[Close]

BLAST of Spg004144 vs. ExPASy TrEMBL
Match: A0A1S3BT38 (poly(A)-specific ribonuclease PARN-like OS=Cucumis melo OX=3656 GN=LOC103492866 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.0e-33
Identity = 80/143 (55.94%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 25  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDT 84
           R L++T+T QWS++Q+RNSNFH CL D KNHISDSDF+A SLQ TGSSSFPWHR QP DT
Sbjct: 12  RRLYTTTTDQWSIKQVRNSNFHSCLGDLKNHISDSDFIALSLQRTGSSSFPWHRPQPFDT 71

Query: 85  YE------KYTAEK----------------------YNFHLFPRDELNIGMPS------- 133
            +      KY AEK                      YNFHLFPRDELNIGMPS       
Sbjct: 72  LDTAYCKAKYAAEKFQILQFSLCPFSVRDSKLIAHPYNFHLFPRDELNIGMPSYSFSCQV 131

[Close]

BLAST of Spg004144 vs. TAIR 10
Match: AT3G25430.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-24
Identity = 61/148 (41.22%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 20  LSPVARHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRL 79
           +S  A +  + +  +WSV+Q++ SNFH  L++ +  I  SDF+A SLQNTGS +  WHR+
Sbjct: 9   ISATAGNTKTLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRV 68

Query: 80  QPLDTYE------KYTAEK----------------------YNFHLFPRDELNIGMPS-- 133
             +DT +      KY AE+                      YNFHLFPRDEL  GMPS  
Sbjct: 69  SAIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYS 128

[Close]

BLAST of Spg004144 vs. TAIR 10
Match: AT1G55870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 40/141 (28.37%), Postives = 64/141 (45.39%), Query Frame = 0


Query: 29  STSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE-- 88
           +++T+ + ++ +  SNF   L D ++ +  +DF+A  L+ TG +S PW      D Y+  
Sbjct: 30  ASATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVR 89

Query: 89  ----KYTAEKY------------------------NFHLFPRDELNIGMPSD----MKTS 133
               K +AEK+                        NF +FPR EL    P+       TS
Sbjct: 90  YLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTS 149

The following BLAST results are available for this feature:

BLAST of Spg004144 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899638.1	1.6e-36	62.32	poly(A)-specific ribonuclease PARN-like isoform X1 [Benincasa hispida]	[more]
XP_038899639.1	1.6e-36	62.32	poly(A)-specific ribonuclease PARN-like isoform X2 [Benincasa hispida]	[more]
XP_016903395.1	2.0e-34	56.00	PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo]	[more]
XP_023547854.1	5.7e-34	59.44	poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023547855.1	5.7e-34	59.44	poly(A)-specific ribonuclease PARN-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg004144 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4C3	3.6e-23	41.22	Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g2...	[more]
Q9LG26	2.1e-07	28.37	Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 ...	[more]

BLAST of Spg004144 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E5Z5	9.5e-35	56.00	poly(A)-specific ribonuclease PARN-like OS=Cucumis melo OX=3656 GN=LOC103503081 ...	[more]
A0A6J1GP80	6.1e-34	58.74	poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1GQJ8	6.1e-34	58.74	poly(A)-specific ribonuclease PARN-like isoform X2 OS=Cucurbita moschata OX=3662...	[more]
A0A5A7V1F6	8.0e-34	56.64	Poly(A)-specific ribonuclease PARN-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BT38	4.0e-33	55.94	poly(A)-specific ribonuclease PARN-like OS=Cucumis melo OX=3656 GN=LOC103492866 ...	[more]

BLAST of Spg004144 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25430.1	2.6e-24	41.22	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G55870.1	1.5e-08	28.37	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 39..136 e-value: 3.5E-7 score: 31.6
None	No IPR available	PANTHER	PTHR15092:SF42	POLY(A)-SPECIFIC RIBONUCLEASE PARN-LIKE	coord: 30..86 coord: 87..132
None	No IPR available	PANTHER	PTHR15092	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	coord: 87..132
None	No IPR available	PANTHER	PTHR15092	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	coord: 30..86
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 37..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004144.1	Spg004144.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding