Spg004117 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004117
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPhloem filament protein
Locationscaffold4: 2853080 .. 2853433 (+)
RNA-Seq ExpressionSpg004117
SyntenySpg004117
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTTGTTGCTCGTATCGCTCCCAATGACATCGTCCTCAAGGCGATGGACAAAAGCGTGAGCAATTGGTTACCAATTCCCAGCGTATGGGATGTTATTGTGGATGAAATTGCAAAGTTTGCCGTGGAACAATACAACATTCAATTTGGGGGACATTACACATTCAATAATGTTGATTGTGGTTGGTATGTGGAGCTGTCGGGTGGAAAATTTCTAGTCCATCTTCATGTTGTGGTGACAGACTTTCTTGGTGGTACCTTAAAAATTGAGGTTGTTGTGTCTGTAGGACTCGATATTTTTGATCCCAAGAATTGGAACCTCGAAGCTTTCAACCCCCTCGCAGTTAACTGA

mRNA sequence

ATGGCAGTTGTTGCTCGTATCGCTCCCAATGACATCGTCCTCAAGGCGATGGACAAAAGCGTGAGCAATTGGTTACCAATTCCCAGCGTATGGGATGTTATTGTGGATGAAATTGCAAAGTTTGCCGTGGAACAATACAACATTCAATTTGGGGGACATTACACATTCAATAATGTTGATTGTGGTTGGTATGTGGAGCTGTCGGGTGGAAAATTTCTAGTCCATCTTCATGTTGTGGTGACAGACTTTCTTGGTGGTACCTTAAAAATTGAGGTTGTTGTGTCTGTAGGACTCGATATTTTTGATCCCAAGAATTGGAACCTCGAAGCTTTCAACCCCCTCGCAGTTAACTGA

Coding sequence (CDS)

ATGGCAGTTGTTGCTCGTATCGCTCCCAATGACATCGTCCTCAAGGCGATGGACAAAAGCGTGAGCAATTGGTTACCAATTCCCAGCGTATGGGATGTTATTGTGGATGAAATTGCAAAGTTTGCCGTGGAACAATACAACATTCAATTTGGGGGACATTACACATTCAATAATGTTGATTGTGGTTGGTATGTGGAGCTGTCGGGTGGAAAATTTCTAGTCCATCTTCATGTTGTGGTGACAGACTTTCTTGGTGGTACCTTAAAAATTGAGGTTGTTGTGTCTGTAGGACTCGATATTTTTGATCCCAAGAATTGGAACCTCGAAGCTTTCAACCCCCTCGCAGTTAACTGA

Protein sequence

MAVVARIAPNDIVLKAMDKSVSNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTFNNVDCGWYVELSGGKFLVHLHVVVTDFLGGTLKIEVVVSVGLDIFDPKNWNLEAFNPLAVN
Homology
BLAST of Spg004117 vs. NCBI nr
Match: XP_023522970.1 (uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-11
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 1  MAVVARIAPNDIVLK-AMDKSV---SNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTF 60
          MAVVA IA ND + +  +D  +   S W+ IP V +V V  IAKFAV+ YN+     + +
Sbjct: 1  MAVVAHIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKY 60

Query: 61 NNVDCGWYVELSGGKFLVHLHVVVTDFLGGTLKIEVVVS 96
           ++ CGW++EL G     HLH+ V D LG   +++VVVS
Sbjct: 61 KSIKCGWFMELKGEDLAFHLHIEVKDCLGRIFELDVVVS 99

BLAST of Spg004117 vs. NCBI nr
Match: KAG6588759.1 (hypothetical protein SDJN03_17324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 1  MAVVARIAPNDIVLK-AMDKSV---SNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTF 60
          MAVVA+IA ND + +  +D  +   S W+ IP V +V V  IAKFAV+ YN+     + +
Sbjct: 1  MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKY 60

Query: 61 NNVDCGWYVELSGGKFLVHLHVVVTDFLGGTLKIEVVVS 96
           ++ CGW++EL G      LH+VV D LG   +++VVVS
Sbjct: 61 QSIKCGWFMELKGEDLAFRLHIVVKDCLGRIFELDVVVS 99

BLAST of Spg004117 vs. NCBI nr
Match: KAG6588756.1 (hypothetical protein SDJN03_17321, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 1  MAVVARIAPNDIVLK-AMDKSV---SNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTF 60
          MA V   APND + +  +D ++   S W+PIP+V ++ V  +AKFAVE YN++    + +
Sbjct: 1  MAAVVH-APNDPINQLKIDGNLLCPSKWIPIPNVSEICVQNVAKFAVEDYNLEHKESFKY 60

Query: 61 NNVDCGWYVELSGGKFLVHLHVVVTDFLGGTLKIEVVVS 96
           N+ CGW++EL G      LHV V D LG   +++VVVS
Sbjct: 61 KNIKCGWFMELKGEDLAFRLHVEVKDCLGRVFEMDVVVS 98

BLAST of Spg004117 vs. NCBI nr
Match: KAG6588755.1 (hypothetical protein SDJN03_17320, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 1  MAVVARIAPNDIVLK-AMDKSV---SNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTF 60
          MAVVA+I  ND + +  +D  +   S W+ IP V +V V  IAKFAV+ YN+     + +
Sbjct: 1  MAVVAQITSNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVQDYNLIHKESFKY 60

Query: 61 NNVDCGWYVELSGGKFLVHLHVVVTDFLGGTLKIEVVVS 96
           ++ CGW++EL G      LH+VV D LG   +++VVVS
Sbjct: 61 QSIKCGWFMELKGEDLAFRLHIVVKDCLGRIFELDVVVS 99

BLAST of Spg004117 vs. NCBI nr
Match: KAG6588758.1 (hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 1  MAVVARIAPNDIVLK-AMDKSV---SNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTF 60
          MAVVA+IA ND + +  +D  +   S W+ IP V +V V  IAKFAVE YN+     + +
Sbjct: 1  MAVVAQIASNDPISQLKIDGCLICPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKY 60

Query: 61 NNVDCGWYVELSGGKFLVHLHVVVTDFLGGTLKIEVVVS 96
           ++ CGW++EL G      LH+ V D LG   ++ VVVS
Sbjct: 61 KSIKCGWFMELKGEDLAYRLHIEVKDCLGRIFELNVVVS 99

BLAST of Spg004117 vs. ExPASy TrEMBL
Match: A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 16 AMDKSVSNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTFNNVDCGWYVELSGGKFLVH 75
          A  + V  W+ IP V    + ++AKFAVE++N + G    +N++  GWY+EL        
Sbjct: 9  AQGEVVEKWIKIPDVNGHCLQQVAKFAVEKFNAEHGDCLIYNSIFEGWYLELGSNNLKYR 68

Query: 76 LHVVVTDFLGGTLKIEVVV 95
          LH+   DFLG  L  EVVV
Sbjct: 69 LHIKAVDFLGRLLIYEVVV 87

BLAST of Spg004117 vs. ExPASy TrEMBL
Match: A0A6J1JKF7 (uncharacterized protein LOC111486626 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486626 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-06
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0

Query: 20 SVSNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTFNNVDCGWYVELSGGKFLVHLHVV 79
          +V  W+ IP V    V E+AK AVEQ+N+Q G    ++++  GWY EL        LH+ 
Sbjct: 13 AVEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYDSIHEGWYCELGQNNLKYRLHIR 72

Query: 80 VTDFLGGTLKIEVVV 95
            DFL  +L  E +V
Sbjct: 73 AIDFLQRSLLYEALV 87

BLAST of Spg004117 vs. ExPASy TrEMBL
Match: A0A6J1JG70 (uncharacterized protein LOC111486626 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486626 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-06
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0

Query: 20 SVSNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTFNNVDCGWYVELSGGKFLVHLHVV 79
          +V  W+ IP V    V E+AK AVEQ+N+Q G    ++++  GWY EL        LH+ 
Sbjct: 13 AVEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYDSIHEGWYCELGQNNLKYRLHIR 72

Query: 80 VTDFLGGTLKIEVVV 95
            DFL  +L  E +V
Sbjct: 73 AIDFLQRSLLYEALV 87

BLAST of Spg004117 vs. ExPASy TrEMBL
Match: P94012 (Phloem filament protein OS=Cucurbita maxima OX=3661 GN=PP1 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-06
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0

Query: 20 SVSNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTFNNVDCGWYVELSGGKFLVHLHVV 79
          +V  W+ IP V    V E+AK AVEQ+N+Q G    ++++  GWY EL        LH+ 
Sbjct: 13 AVEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYDSIHEGWYCELGQNNLKYRLHIR 72

Query: 80 VTDFLGGTLKIEVVV 95
            DFL  +L  E +V
Sbjct: 73 AIDFLQRSLLYEALV 87

BLAST of Spg004117 vs. ExPASy TrEMBL
Match: A0A6J1ELQ9 (uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC111434515 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 31/76 (40.79%), Postives = 39/76 (51.32%), Query Frame = 0

Query: 19  KSVSNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTFNNVDCGWYVELSGGKFLVHLHV 78
           K V  W  IP V D+ +  + KF +E   I+FG    F  +  GWY EL         HV
Sbjct: 216 KVVPGWNQIPDVKDLGLQVVIKFILEHIKIKFGDSLKFEIIYEGWYFELCPNSLKYRFHV 275

Query: 79  VVTDFLGGTLKIEVVV 95
            V DFLG +LK EVV+
Sbjct: 276 KVIDFLGRSLKFEVVI 291

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023522970.13.1e-1142.42uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo][more]
KAG6588759.14.1e-1142.42hypothetical protein SDJN03_17324, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588756.15.3e-1141.41hypothetical protein SDJN03_17321, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588755.11.2e-1041.41hypothetical protein SDJN03_17320, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588758.11.2e-1042.42hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EIQ85.0e-0739.24uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
A0A6J1JKF75.5e-0638.67uncharacterized protein LOC111486626 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JG705.5e-0638.67uncharacterized protein LOC111486626 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
P940125.5e-0638.67Phloem filament protein OS=Cucurbita maxima OX=3661 GN=PP1 PE=4 SV=1[more]
A0A6J1ELQ91.6e-0540.79uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC1114345... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 34..96
e-value: 1.8E-13
score: 50.3
NoneNo IPR availableGENE3D3.10.450.10coord: 17..114
e-value: 5.8E-6
score: 28.4
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 21..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004117.1Spg004117.1mRNA