Spg004117 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGTTGTTGCTCGTATCGCTCCCAATGACATCGTCCTCAAGGCGATGGACAAAAGCGTGAGCAATTGGTTACCAATTCCCAGCGTATGGGATGTTATTGTGGATGAAATTGCAAAGTTTGCCGTGGAACAATACAACATTCAATTTGGGGGACATTACACATTCAATAATGTTGATTGTGGTTGGTATGTGGAGCTGTCGGGTGGAAAATTTCTAGTCCATCTTCATGTTGTGGTGACAGACTTTCTTGGTGGTACCTTAAAAATTGAGGTTGTTGTGTCTGTAGGACTCGATATTTTTGATCCCAAGAATTGGAACCTCGAAGCTTTCAACCCCCTCGCAGTTAACTGA ATGGCAGTTGTTGCTCGTATCGCTCCCAATGACATCGTCCTCAAGGCGATGGACAAAAGCGTGAGCAATTGGTTACCAATTCCCAGCGTATGGGATGTTATTGTGGATGAAATTGCAAAGTTTGCCGTGGAACAATACAACATTCAATTTGGGGGACATTACACATTCAATAATGTTGATTGTGGTTGGTATGTGGAGCTGTCGGGTGGAAAATTTCTAGTCCATCTTCATGTTGTGGTGACAGACTTTCTTGGTGGTACCTTAAAAATTGAGGTTGTTGTGTCTGTAGGACTCGATATTTTTGATCCCAAGAATTGGAACCTCGAAGCTTTCAACCCCCTCGCAGTTAACTGA ATGGCAGTTGTTGCTCGTATCGCTCCCAATGACATCGTCCTCAAGGCGATGGACAAAAGCGTGAGCAATTGGTTACCAATTCCCAGCGTATGGGATGTTATTGTGGATGAAATTGCAAAGTTTGCCGTGGAACAATACAACATTCAATTTGGGGGACATTACACATTCAATAATGTTGATTGTGGTTGGTATGTGGAGCTGTCGGGTGGAAAATTTCTAGTCCATCTTCATGTTGTGGTGACAGACTTTCTTGGTGGTACCTTAAAAATTGAGGTTGTTGTGTCTGTAGGACTCGATATTTTTGATCCCAAGAATTGGAACCTCGAAGCTTTCAACCCCCTCGCAGTTAACTGA MAVVARIAPNDIVLKAMDKSVSNWLPIPSVWDVIVDEIAKFAVEQYNIQFGGHYTFNNVDCGWYVELSGGKFLVHLHVVVTDFLGGTLKIEVVVSVGLDIFDPKNWNLEAFNPLAVN Homology
BLAST of Spg004117 vs. NCBI nr
Match: XP_023522970.1 (uncharacterized protein LOC111787034 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 79.0 bits (193), Expect = 3.1e-11 Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 0
BLAST of Spg004117 vs. NCBI nr
Match: KAG6588759.1 (hypothetical protein SDJN03_17324, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 78.6 bits (192), Expect = 4.1e-11 Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0
BLAST of Spg004117 vs. NCBI nr
Match: KAG6588756.1 (hypothetical protein SDJN03_17321, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11 Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 0
BLAST of Spg004117 vs. NCBI nr
Match: KAG6588755.1 (hypothetical protein SDJN03_17320, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10 Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 0
BLAST of Spg004117 vs. NCBI nr
Match: KAG6588758.1 (hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10 Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 0
BLAST of Spg004117 vs. ExPASy TrEMBL
Match: A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 0
BLAST of Spg004117 vs. ExPASy TrEMBL
Match: A0A6J1JKF7 (uncharacterized protein LOC111486626 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486626 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 5.5e-06 Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0
BLAST of Spg004117 vs. ExPASy TrEMBL
Match: A0A6J1JG70 (uncharacterized protein LOC111486626 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486626 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 5.5e-06 Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0
BLAST of Spg004117 vs. ExPASy TrEMBL
Match: P94012 (Phloem filament protein OS=Cucurbita maxima OX=3661 GN=PP1 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 5.5e-06 Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 0
BLAST of Spg004117 vs. ExPASy TrEMBL
Match: A0A6J1ELQ9 (uncharacterized protein LOC111434515 OS=Cucurbita moschata OX=3662 GN=LOC111434515 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05 Identity = 31/76 (40.79%), Postives = 39/76 (51.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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