Spg003862 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003862
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold8: 22110956 .. 22111261 (+)
RNA-Seq ExpressionSpg003862
SyntenySpg003862
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAATACGTTCAGGCCATATGCAAATACCTCATTCTTGCACTCTTCATCTCTCTCTCCTTTGAAACTCTGCAATTTTCTTTAGAAAACAAAGAGTCTCTCCTTTCCACAGCACAAAGCTCCAACTTCGACGTTTCGGCTGTCGATTACAAAGACGGTTTTCGACCGACAGCCCCCGGAAACAGCCCTGGAGTTGGCCATCACTCTTTTCAGCAGGGAAGGAGAAATATGGAAGTAGAGGCTGCAAGTGATCAGGCTCTTCACCACATAACTGCAAAATATAAGCTGAGACTCATTAATTAG

mRNA sequence

ATGGGAAAATACGTTCAGGCCATATGCAAATACCTCATTCTTGCACTCTTCATCTCTCTCTCCTTTGAAACTCTGCAATTTTCTTTAGAAAACAAAGAGTCTCTCCTTTCCACAGCACAAAGCTCCAACTTCGACGTTTCGGCTGTCGATTACAAAGACGGTTTTCGACCGACAGCCCCCGGAAACAGCCCTGGAGTTGGCCATCACTCTTTTCAGCAGGGAAGGAGAAATATGGAAGTAGAGGCTGCAAGTGATCAGGCTCTTCACCACATAACTGCAAAATATAAGCTGAGACTCATTAATTAG

Coding sequence (CDS)

ATGGGAAAATACGTTCAGGCCATATGCAAATACCTCATTCTTGCACTCTTCATCTCTCTCTCCTTTGAAACTCTGCAATTTTCTTTAGAAAACAAAGAGTCTCTCCTTTCCACAGCACAAAGCTCCAACTTCGACGTTTCGGCTGTCGATTACAAAGACGGTTTTCGACCGACAGCCCCCGGAAACAGCCCTGGAGTTGGCCATCACTCTTTTCAGCAGGGAAGGAGAAATATGGAAGTAGAGGCTGCAAGTGATCAGGCTCTTCACCACATAACTGCAAAATATAAGCTGAGACTCATTAATTAG

Protein sequence

MGKYVQAICKYLILALFISLSFETLQFSLENKESLLSTAQSSNFDVSAVDYKDGFRPTAPGNSPGVGHHSFQQGRRNMEVEAASDQALHHITAKYKLRLIN
Homology
BLAST of Spg003862 vs. NCBI nr
Match: XP_011650158.1 (precursor of CEP9 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 43/103 (41.75%), Postives = 50/103 (48.54%), Query Frame = 0

Query: 1   MGKY-VQAICKYLILALFISLSFETLQFSLENKESLLS------TAQSSNFDVSAVDYKD 60
           MG Y  Q IC+  IL L I ++F T Q      + L S      ++    F  S V  KD
Sbjct: 1   MGNYHFQTICQCAILLLTIFIAFGTYQIQGRPFKPLTSSHIPSHSSLGDGFRESDVGSKD 60

Query: 61  GFRPTAPGNSPGVGHHSFQQGRRNMEVEAASDQALHHITAKYK 97
            FRPT PGNSPGVGHHS +  R       ASD    HIT   K
Sbjct: 61  DFRPTTPGNSPGVGHHSIR--RSGTMAAIASDGRAVHITEGLK 101

BLAST of Spg003862 vs. NCBI nr
Match: XP_008457955.1 (PREDICTED: uncharacterized protein LOC103497520 [Cucumis melo] >KAA0045832.1 uncharacterized protein E6C27_scaffold243G003610 [Cucumis melo var. makuwa] >TYJ99451.1 uncharacterized protein E5676_scaffold123G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-04
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0

Query: 1  MGKY-VQAICKYLILALFISLSFETLQFS---LENKESLLSTAQSS---NFDVSAVDYKD 60
          MG Y  Q IC+  IL L I ++F T Q     L+   S    + SS    F  S V  KD
Sbjct: 1  MGNYHFQTICQCAILLLTIFIAFGTYQIQGRPLKPHTSSHIPSHSSLGDGFRESNVGSKD 60

Query: 61 GFRPTAPGNSPGVGHHSFQQGRRNMEVEAASDQALHH 91
           FRPT PGNSPGVGHHS Q+    M   A+++Q +H+
Sbjct: 61 DFRPTTPGNSPGVGHHSVQRS-GTMAAIASNNQLVHN 96

BLAST of Spg003862 vs. ExPASy TrEMBL
Match: A0A0A0LMN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285370 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 43/103 (41.75%), Postives = 50/103 (48.54%), Query Frame = 0

Query: 1   MGKY-VQAICKYLILALFISLSFETLQFSLENKESLLS------TAQSSNFDVSAVDYKD 60
           MG Y  Q IC+  IL L I ++F T Q      + L S      ++    F  S V  KD
Sbjct: 1   MGNYHFQTICQCAILLLTIFIAFGTYQIQGRPFKPLTSSHIPSHSSLGDGFRESDVGSKD 60

Query: 61  GFRPTAPGNSPGVGHHSFQQGRRNMEVEAASDQALHHITAKYK 97
            FRPT PGNSPGVGHHS +  R       ASD    HIT   K
Sbjct: 61  DFRPTTPGNSPGVGHHSIR--RSGTMAAIASDGRAVHITEGLK 101

BLAST of Spg003862 vs. ExPASy TrEMBL
Match: A0A5A7TR16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00110 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0

Query: 1  MGKY-VQAICKYLILALFISLSFETLQFS---LENKESLLSTAQSS---NFDVSAVDYKD 60
          MG Y  Q IC+  IL L I ++F T Q     L+   S    + SS    F  S V  KD
Sbjct: 1  MGNYHFQTICQCAILLLTIFIAFGTYQIQGRPLKPHTSSHIPSHSSLGDGFRESNVGSKD 60

Query: 61 GFRPTAPGNSPGVGHHSFQQGRRNMEVEAASDQALHH 91
           FRPT PGNSPGVGHHS Q+    M   A+++Q +H+
Sbjct: 61 DFRPTTPGNSPGVGHHSVQRS-GTMAAIASNNQLVHN 96

BLAST of Spg003862 vs. ExPASy TrEMBL
Match: A0A1S3C7Z6 (uncharacterized protein LOC103497520 OS=Cucumis melo OX=3656 GN=LOC103497520 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 0

Query: 1  MGKY-VQAICKYLILALFISLSFETLQFS---LENKESLLSTAQSS---NFDVSAVDYKD 60
          MG Y  Q IC+  IL L I ++F T Q     L+   S    + SS    F  S V  KD
Sbjct: 1  MGNYHFQTICQCAILLLTIFIAFGTYQIQGRPLKPHTSSHIPSHSSLGDGFRESNVGSKD 60

Query: 61 GFRPTAPGNSPGVGHHSFQQGRRNMEVEAASDQALHH 91
           FRPT PGNSPGVGHHS Q+    M   A+++Q +H+
Sbjct: 61 DFRPTTPGNSPGVGHHSVQRS-GTMAAIASNNQLVHN 96

BLAST of Spg003862 vs. TAIR 10
Match: AT5G66816.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 7.6e-04
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 11 YLILA-LFISLSFETLQFSLENKESLLSTAQSSNFDVSAVDYKDGFRPTAPGNSPGVGH 69
          Y+IL+ LFIS  F  +QF+ E ++   +  Q  +     V Y D F PT+PGNSPG+GH
Sbjct: 6  YIILSILFISTVFYEIQFT-EARQLRKTDDQDHDDHHFTVGYTDDFGPTSPGNSPGIGH 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011650158.12.4e-0441.75precursor of CEP9 [Cucumis sativus][more]
XP_008457955.15.4e-0443.30PREDICTED: uncharacterized protein LOC103497520 [Cucumis melo] >KAA0045832.1 unc... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LMN41.2e-0441.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285370 PE=3 SV=1[more]
A0A5A7TR162.6e-0443.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C7Z62.6e-0443.30uncharacterized protein LOC103497520 OS=Cucumis melo OX=3656 GN=LOC103497520 PE=... [more]
Match NameE-valueIdentityDescription
AT5G66816.17.6e-0444.07unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003862.1Spg003862.1mRNA