Spg003835 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003835
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPre-mRNA-splicing factor 38
Locationscaffold4: 44116964 .. 44120898 (+)
RNA-Seq ExpressionSpg003835
SyntenySpg003835
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACTCATTTCTCCATCCTCTTCCCGTCCGGCGTCTGAATTAGGGTTTCGATCATTCTCCTCTGTCGATTTACCTGTAACGATACGGACTTCGCTGTTCTATAGCTGGTAGTTATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATAAGGGGAACGAACCCGCAGAACTTAGTCGAGAAGATTCTTCGCTCGAAGATCTACCAGAACACTTACTGGAAGGAGCAGTGTTTTGGTTTGACGGCGGAGACATTGGTCGACAAGGCCATGGAGCTCGACCACCTTGGCGGTACATTTGGTGGCAACCGCAAGCCCACGCCGTTCATGTGTCTCGTTATGAAGATGCTCCAGATTCAGCCGGAGAAAGAAATCGTTATCGAGTTCATCAAGAATGAAGATTACAAGTAATTGTTATTGTCATTTTTTAGTTTTCATCAAGCAGAACTCTGCAATTTGGTTACCTAGAACCGTTGAGGAATAGAGTTATTTGGAGGGAATATTATAATTGTTTGTTTTGTGTAGTTGAAAGAAACCATGATTTAGGGAACTTACTACGAAACTTGTGAAAAAATACATAATTGTAGGTCGGAAAGTTTTTGCAGTTGATCGGGAATCGGAAATTAGGGATGGTGAATGATTTAAGAACTTCTGTATGGGCACTATCTCTGGTTCTTTGGTAATTTTGATTTGATAAGCATAAGAAATGGATGAACTACTAGGCTTATGGTTGGTTGAGCTAACTGAAGTTCATTGGAAAAGGGTTCTGTATCTCATGGTGTACTATGGTTCTTAAAGTTGTTATTTACTGGCCTTGGTTGCTTTTATACCGTATGGTCTTGAAAGTGAGTTGTCTGCTGGGAGTTGGATCTAAATCTTTCATCTGTCAGTTAATAACTATGTAGTATTAGTGAAAAATCTCTCTTGTAATTTCCTGAGTATTGTATGTTGGTTTTCTAGCCTCTTTCAAGCATTCTTTTGAAGTTACTTTTTTTCTTTGGATATAGATATGTTCGGATTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAGCCTCTGTACAACGACTATCGGAAATTGAGGAGAAAATTAGCTGATGGATGTAAGATTCTGGGCCTCTTCGTGAATATTATCTAATTAGTTATTGTGAAAATTAGTTGATCTTACTTTCTTGTTGCATTCGTGTATTCTAGTTATGAACTTGATGTCCTCTCTCAAAAAAGGTCATGAACTTGATCGTATTTTTATCAGGTTTTTCTTTGACACACGTGGATGAAGTCATCGATGAACTTCTTACTAAAGATTATTCATGTGACATTGCTCTGCCACGTGTCAAAAAGAGGTATGGTACTGATCACTCACGTGGCTATTTTTCAAGCGAGAGTTGATAATGTTTTATTAAAATCAGGGCCTTAGGAGAAATATGCATTATTCATTGTTTGACAAACAGAAGTACATGGGTCACAAGTTCTAAATGTTGCTGTTCTGTTTTTTCTCTCTTTACGTGTCTCTTCTCTAGTGTTCAATTTTGATGATGTGCTTCTTCTTGAAGTAACCTAAGTAAGATACACTTTGTTATGGCAGATGGACCCTTGAATCTACTGGTTCACTGCCTGCACGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGACGTTGAGCCAATTAATGATGCTTTAGAAGATGAAATTCATGAGAAGGTAAACACATTCTCTGTTTGTATTTGTATGTAAATGAGCATCTAGTTTTCATTTTCTTATCCTTGCTAACCCTTTTGATATCTTGCATCTGCAGAATTATTATCGAGGGAGAAGTCCTGTGCGGGAGAGAGATAGAGACAGGAGGCGTGATAGTCACAGACACAGGTCCGACCCTGGCTTCTGTTTTTTAGTTTCTTCTCCCTCCCTCACCTCTCATTTTTTATGGATGCAACCATGGTACTCTTTGTGAATATTTCCTTCTGTGGAGGCCATTAATTGATATCTCGGGTCTATTAGCTGTCTTCATTTCGTAGATCACATAAATTTTCATTGAATATGAATAATAATGTCCAAGACCAAAACCAACAATTTTGAACTCAAAATTTTTGTTTTAATTGAGTTGTTTTGTTGCTAATGCAATTCTCTTAGTGGAGTTAGCATTGGCGAAAGTTAAAAAATTAGATTGAACAAAATTAGGAGATGAATAGGAGAATGGAAGAAGTGGCATGGCATGAAGTTATTTACTTGGTCTGGAAAACCCATGCTCTTGCCTATCTTGGGATTGGGTTTAGTTGCTTCTAAGATCTTTGCACTTTTGACCACCTTGTGTACCCAAGCTGAGTACGAAGTTGATTTTGGTTTTTGACCCTGCGACTTCTGTGAGAATAAGGATTTATTTCCTTTTTGTACCTGACATGATATGTTATTTAAATAAGATGAATCCTTACTTGATCTGGCTCTGTTCAAACTGATTTTGATGCACTCTGTGGATTTTTGTTTTTTTTAAAAATTTTAAATTACATAGTTGGAAGCAGTTGGAACCTGTTATTCTTGGATTTCTATCCATACTGGTCAATCAACATTCATATGTTTTTCTTCACAACCATGGTATTTCAAGCCATTGGTTGCTTGCTGCTTCCTACAGTAAATTCTCAAGATCCTGCCAGGTTTCTCTGTACTGACAGTGTGCAGCTGAGAAGTATGATGGATCATACATATAATTGTCATAGTGATCTCATTTTCTCAATTTTATTTTTATATTGCCTTTAACGGTTATCTTGGTGACCACAGCTGAGAATTACTCATATGTTTTTCCTTCTATATTTTCTTTTCATTTTTGGCCGCACCATCAAGTTTATATTTGGTGTTCTTCCCAAATGTTAAAATTTTCTGCCTATTCTGCTTTTCCTGTGAAATGACCTGTTTGTGCATCCAGCATACGATATTTTATTCTCCACCTTTTGATCCTGAAATCCTTGTCTATGATGCGTTATTTTGTTGCATTTATGAGCTGTGGCACTTCATTGTTCCATTGAGCAGGAACAATTTTGATCTATTGACACACCACATTTTTCTTTTGTTTAATCACAGGGACCGAGATTATGATAGAGACCGGGATTATGACAGAGACTATGATAGAGACCGTGGACGTGGAAGAGAAAGAGATAGAGATCGAGAAAGGGACAGAGATAGGGAGAGGGAGAGGGAGAGGGATAGGGACAGGGACAGGGACAGAGACAGAGACAGGGATAGGGATCGCTATCGCCTAAGGGATGAGAAGGATTATGGCAGAGATCGAGACAGGGAAAGGGAAGGCAGGGAGCGGGGGAGGCGAGATAGAGATCGTGGTAGAAGGAGAAGCCATTCAAGGAGCCGAAGTAGAAGTAAGGACCGGGAGGATGGGGAGCACCGCAAGAGACACGCCCGTAGCAGTGCTAGTCCTAGAAGAAGGGATGGAGCTGAGGATAGAGATGAGCCGAAGAGGAAGAAAGAAAAGAAGGAGAAAAAAGAAAGTGGTGCAGGTGAGGAGGATCCGGAGATTGCAGAATGGAACAGGATTCGTGCTTCTCTTGGACTGGCACCTCTGAAGTAGATGATCTTTCATCTACAGTTTTTCAATGATCTACCCTGTTTTCCTCATCAGTTTGAGTTTGGGAACCGAAAGATGCTAATGCTATGTAGCATGAAGGTCCTGATGTCTGTATAATATATGTTGCAATTACAATCTCTGTTGAATCAAATGTTAGTATAAGATCACATTTGGAAATATTGCATCAGCCCTCTTGTCCTATGCATGAACTGTACTTGGATTGCAAGAATTCACTTACAAATTTTCGGTAGTTGTTGAATTGTATTAAACATCGAGTTTTGTTTTGAAGACTTGTTGATATATATAAATAATATTTTTGAGAATTCGAT

mRNA sequence

ATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATAAGGGGAACGAACCCGCAGAACTTAGTCGAGAAGATTCTTCGCTCGAAGATCTACCAGAACACTTACTGGAAGGAGCAGTGTTTTGGTTTGACGGCGGAGACATTGGTCGACAAGGCCATGGAGCTCGACCACCTTGGCGGTACATTTGGTGGCAACCGCAAGCCCACGCCGTTCATGTGTCTCGTTATGAAGATGCTCCAGATTCAGCCGGAGAAAGAAATCGTTATCGAGTTCATCAAGAATGAAGATTACAATTCATTGGAAAAGGGTTCTGTATCTCATGGTGTACTATGGTTCTTAAAGTTGTTATTTACTGGCCTTGGTTGCTTTTATACCGTATGA

Coding sequence (CDS)

ATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATAAGGGGAACGAACCCGCAGAACTTAGTCGAGAAGATTCTTCGCTCGAAGATCTACCAGAACACTTACTGGAAGGAGCAGTGTTTTGGTTTGACGGCGGAGACATTGGTCGACAAGGCCATGGAGCTCGACCACCTTGGCGGTACATTTGGTGGCAACCGCAAGCCCACGCCGTTCATGTGTCTCGTTATGAAGATGCTCCAGATTCAGCCGGAGAAAGAAATCGTTATCGAGTTCATCAAGAATGAAGATTACAATTCATTGGAAAAGGGTTCTGTATCTCATGGTGTACTATGGTTCTTAAAGTTGTTATTTACTGGCCTTGGTTGCTTTTATACCGTATGA

Protein sequence

MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLWFLKLLFTGLGCFYTV
Homology
[Close]
BLAST of Spg003835 vs. NCBI nr
Match: RVW97880.1 (Pre-mRNA-splicing factor 38 [Vitis vinifera])

HSP 1 Score: 204.1 bits (518), Expect = 6.9e-49
Identity = 102/123 (82.93%), Postives = 105/123 (85.37%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLWFLKLLFTGLG 120
           FGGNRKPTPFMCLVMKMLQIQPEK+IV+EFIKNE+YN L         L F  L    LG
Sbjct: 61  FGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEEYNDL--------FLGFYNLYVRILG 115

Query: 121 CFY 124
            FY
Sbjct: 121 AFY 115

[Close]
BLAST of Spg003835 vs. NCBI nr
Match: RVW39195.1 (Pre-mRNA-splicing factor 38 [Vitis vinifera])

HSP 1 Score: 204.1 bits (518), Expect = 6.9e-49
Identity = 102/123 (82.93%), Postives = 105/123 (85.37%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLWFLKLLFTGLG 120
           FGGNRKPTPFMCLVMKMLQIQPEK+IV+EFIKNE+YN L         L F  L    LG
Sbjct: 61  FGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEEYNDL--------FLGFYNLYVRILG 115

Query: 121 CFY 124
            FY
Sbjct: 121 AFY 115

[Close]
BLAST of Spg003835 vs. NCBI nr
Match: XP_022156427.1 (pre-mRNA-splicing factor 38 [Momordica charantia])

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
          MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 97
          FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Sbjct: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 96

[Close]
BLAST of Spg003835 vs. NCBI nr
Match: KAG2402363.1 (Pre-mRNA-splicing factor [Vigna angularis])

HSP 1 Score: 200.7 bits (509), Expect = 7.6e-48
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
          MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 97
          +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Sbjct: 61 YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 96

[Close]
BLAST of Spg003835 vs. NCBI nr
Match: XP_025618956.1 (pre-mRNA-splicing factor 38 [Arachis hypogaea] >QHO34389.1 Pre-mRNA-splicing factor [Arachis hypogaea] >RYR39276.1 hypothetical protein Ahy_A09g044785 [Arachis hypogaea])

HSP 1 Score: 200.7 bits (509), Expect = 7.6e-48
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
          MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 97
          +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Sbjct: 61 YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 96

[Close]
BLAST of Spg003835 vs. ExPASy Swiss-Prot
Match: Q8LB54 (Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.5e-46
Identity = 84/96 (87.50%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
          MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1  MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 97
          FGG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DY
Sbjct: 61 FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDY 96

[Close]
BLAST of Spg003835 vs. ExPASy Swiss-Prot
Match: Q28H87 (Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis OX=8364 GN=prpf38a PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-36
Identity = 72/122 (59.02%), Postives = 95/122 (77.87%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A S+ GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL ++GG 
Sbjct: 1   MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKYVGGV 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLWFLKLLFTGLG 120
           +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+  +     + G L +++L  T   
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVR----TLGAL-YMRLTGTATD 117

Query: 121 CF 123
           C+
Sbjct: 121 CY 117

[Close]
BLAST of Spg003835 vs. ExPASy Swiss-Prot
Match: Q4FK66 (Pre-mRNA-splicing factor 38A OS=Mus musculus OX=10090 GN=Prpf38a PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.1e-36
Identity = 73/122 (59.84%), Postives = 94/122 (77.05%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLWFLKLLFTGLG 120
           +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+  +       G L +++L  T + 
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVR----MLGAL-YMRLTGTAID 117

Query: 121 CF 123
           C+
Sbjct: 121 CY 117

[Close]
BLAST of Spg003835 vs. ExPASy Swiss-Prot
Match: Q0P5I6 (Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.1e-36
Identity = 73/122 (59.84%), Postives = 94/122 (77.05%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLWFLKLLFTGLG 120
           +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+  +       G L +++L  T + 
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVR----MLGAL-YMRLTGTAID 117

Query: 121 CF 123
           C+
Sbjct: 121 CY 117

[Close]
BLAST of Spg003835 vs. ExPASy Swiss-Prot
Match: Q8NAV1 (Pre-mRNA-splicing factor 38A OS=Homo sapiens OX=9606 GN=PRPF38A PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.1e-36
Identity = 73/122 (59.84%), Postives = 94/122 (77.05%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLWFLKLLFTGLG 120
           +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+  +       G L +++L  T + 
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVR----MLGAL-YMRLTGTAID 117

Query: 121 CF 123
           C+
Sbjct: 121 CY 117

[Close]
BLAST of Spg003835 vs. ExPASy TrEMBL
Match: A0A438DUL5 (Pre-mRNA-splicing factor 38 OS=Vitis vinifera OX=29760 GN=PRP38_0 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.3e-49
Identity = 102/123 (82.93%), Postives = 105/123 (85.37%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLWFLKLLFTGLG 120
           FGGNRKPTPFMCLVMKMLQIQPEK+IV+EFIKNE+YN L         L F  L    LG
Sbjct: 61  FGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEEYNDL--------FLGFYNLYVRILG 115

Query: 121 CFY 124
            FY
Sbjct: 121 AFY 115

[Close]
BLAST of Spg003835 vs. ExPASy TrEMBL
Match: A0A438IME0 (Pre-mRNA-splicing factor 38 OS=Vitis vinifera OX=29760 GN=PRP38_1 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.3e-49
Identity = 102/123 (82.93%), Postives = 105/123 (85.37%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLWFLKLLFTGLG 120
           FGGNRKPTPFMCLVMKMLQIQPEK+IV+EFIKNE+YN L         L F  L    LG
Sbjct: 61  FGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEEYNDL--------FLGFYNLYVRILG 115

Query: 121 CFY 124
            FY
Sbjct: 121 AFY 115

[Close]
BLAST of Spg003835 vs. ExPASy TrEMBL
Match: A0A6J1DS16 (Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111023319 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
          MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 97
          FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Sbjct: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 96

[Close]
BLAST of Spg003835 vs. ExPASy TrEMBL
Match: A0A444XKH2 (Pre-mRNA-splicing factor 38 OS=Arachis hypogaea OX=3818 GN=Ahy_B09g096390 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-48
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
          MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 97
          +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Sbjct: 61 YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 96

[Close]
BLAST of Spg003835 vs. ExPASy TrEMBL
Match: I1NJ40 (Pre-mRNA-splicing factor 38 OS=Glycine max OX=3847 GN=100794094 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-48
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
          MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 97
          +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Sbjct: 61 YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 96

[Close]
BLAST of Spg003835 vs. TAIR 10
Match: AT2G40650.1 (PRP38 family protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-47
Identity = 84/96 (87.50%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
          MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1  MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61 FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY 97
          FGG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DY
Sbjct: 61 FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDY 96

The following BLAST results are available for this feature:
BLAST of Spg003835 vs. NCBI nr
Match NameE-valueIdentityDescription
RVW97880.16.9e-4982.93Pre-mRNA-splicing factor 38 [Vitis vinifera][more]
RVW39195.16.9e-4982.93Pre-mRNA-splicing factor 38 [Vitis vinifera][more]
XP_022156427.13.4e-48100.00pre-mRNA-splicing factor 38 [Momordica charantia][more]
KAG2402363.17.6e-4898.96Pre-mRNA-splicing factor [Vigna angularis][more]
XP_025618956.17.6e-4898.96pre-mRNA-splicing factor 38 [Arachis hypogaea] >QHO34389.1 Pre-mRNA-splicing fac... [more]
BLAST of Spg003835 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LB541.5e-4687.50Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1[more]
Q28H872.4e-3659.02Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis OX=8364 GN=prpf38a PE=2 SV=1[more]
Q4FK663.1e-3659.84Pre-mRNA-splicing factor 38A OS=Mus musculus OX=10090 GN=Prpf38a PE=1 SV=1[more]
Q0P5I64.1e-3659.84Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1[more]
Q8NAV14.1e-3659.84Pre-mRNA-splicing factor 38A OS=Homo sapiens OX=9606 GN=PRPF38A PE=1 SV=1[more]
BLAST of Spg003835 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438DUL53.3e-4982.93Pre-mRNA-splicing factor 38 OS=Vitis vinifera OX=29760 GN=PRP38_0 PE=3 SV=1[more]
A0A438IME03.3e-4982.93Pre-mRNA-splicing factor 38 OS=Vitis vinifera OX=29760 GN=PRP38_1 PE=3 SV=1[more]
A0A6J1DS161.6e-48100.00Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111023319 PE=3 ... [more]
A0A444XKH23.7e-4898.96Pre-mRNA-splicing factor 38 OS=Arachis hypogaea OX=3818 GN=Ahy_B09g096390 PE=3 S... [more]
I1NJ403.7e-4898.96Pre-mRNA-splicing factor 38 OS=Glycine max OX=3847 GN=100794094 PE=3 SV=1[more]
BLAST of Spg003835 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G40650.11.1e-4787.50PRP38 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 10..96
e-value: 6.0E-31
score: 107.7
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 1..98
NoneNo IPR availablePANTHERPTHR23142:SF1PRE-MRNA-SPLICING FACTOR 38Acoord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003835.1Spg003835.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071011 precatalytic spliceosome