Spg003779 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003779
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	BHLH domain-containing protein
Location	scaffold4: 48952697 .. 48953383 (+)
RNA-Seq Expression	Spg003779
Synteny	Spg003779

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTGTATTTTCCCTGGACGAGGCTGCTAGAGCCTCCTTCTTCCATGCCATTATGCAATCTTTTCACTCCACTTACATTTGCCTTTGGTCTTATTTACCCCATCCTTCCAAGTAATTCTTTTTATTTACCCTTCCTGTTTTCAGTAAAAACACAAAACACTCTCTTTTTTCTTCTGATTTTTGGATCAATCTGTGTTTTTCATCAGTTTTTTGTTGAATCTTGATGGGTTTTTCCGGGAGGATGCGAATCAAGCGAGCAGTTCTTTGGGGAGTTTCGAACGGAGGCTCTTCGACGAGTACAGGCAATTGATATTTCATGTCGAAAACAAGTAAGTTTTTTTTTTTAAAAAAAAAAAATAAATTAATTTCTTTTTTTTCTTTTGAGTACATGAACATTTGAGGGTGGAGGGATTCGAACCTTTGACCTCATGGTCGAGAGCACATGTCAATTACCGCTGAGCTATGCTCACTTTGGCTTTATTTTAAATTTTCTCTCGGAAGGGAAAAGTTTTGTTTAATTTTTGTAATTATGAACAGCTTTGTCCCTGGTCATGCTTTCAAGAACAACATTTCCTTTTTAGAGGTTCAGGAATCTGCGCTTCAAACCAATTCTTCGTCTCAAATCCAAAGGCAATTTTATGCTGTAAGTGTAAGAGAATGTTCGGAAATGATTTTAGAATGA

mRNA sequence

ATGGAGTTTGTATTTTCCCTGGACGAGGCTGCTAGAGCCTCCTTCTTCCATGCCATTATGCAATCTTTTCACTCCACTTACATTTGCCTTTGTTTTTTGTTGAATCTTGATGGGTTTTTCCGGGAGGATGCGAATCAAGCGAGCAGTTCTTTGGGGAGTTTCGAACGGAGGCTCTTCGACGAGTACAGGCAATTGATATTTCATGTCGAAAACAACTTTGTCCCTGGTCATGCTTTCAAGAACAACATTTCCTTTTTAGAGGTTCAGGAATCTGCGCTTCAAACCAATTCTTCGTCTCAAATCCAAAGGCAATTTTATGCTGTAAGTGTAAGAGAATGTTCGGAAATGATTTTAGAATGA

Coding sequence (CDS)

ATGGAGTTTGTATTTTCCCTGGACGAGGCTGCTAGAGCCTCCTTCTTCCATGCCATTATGCAATCTTTTCACTCCACTTACATTTGCCTTTGTTTTTTGTTGAATCTTGATGGGTTTTTCCGGGAGGATGCGAATCAAGCGAGCAGTTCTTTGGGGAGTTTCGAACGGAGGCTCTTCGACGAGTACAGGCAATTGATATTTCATGTCGAAAACAACTTTGTCCCTGGTCATGCTTTCAAGAACAACATTTCCTTTTTAGAGGTTCAGGAATCTGCGCTTCAAACCAATTCTTCGTCTCAAATCCAAAGGCAATTTTATGCTGTAAGTGTAAGAGAATGTTCGGAAATGATTTTAGAATGA

Protein sequence

MEFVFSLDEAARASFFHAIMQSFHSTYICLCFLLNLDGFFREDANQASSSLGSFERRLFDEYRQLIFHVENNFVPGHAFKNNISFLEVQESALQTNSSSQIQRQFYAVSVRECSEMILE

Homology

[Close]

BLAST of Spg003779 vs. NCBI nr
Match: XP_038890720.1 (putative transcription factor bHLH041 isoform X3 [Benincasa hispida])

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-32
Identity = 83/120 (69.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC--------FLLNLDGFFRED---ANQASS 60
           ME VFSL +AARA+F  +IMQSFHSTYI L          LLNLDGF+ ED     Q SS
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFYGEDDDRKKQPSS 60

Query: 61  SLGSFERRLFDEYRQLIFHVENNFVPGHAFKNNISFLEVQESALQTNSSSQIQRQFYAVS 110
           SLGSFERRLF+EY QLIF++EN+ VPG+AFKNNISFLEVQES LQT+SSSQIQRQFYA +
Sbjct: 61  SLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFYAAA 120

[Close]

BLAST of Spg003779 vs. NCBI nr
Match: XP_038890721.1 (putative transcription factor bHLH041 isoform X4 [Benincasa hispida])

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-32
Identity = 83/120 (69.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC--------FLLNLDGFFRED---ANQASS 60
           ME VFSL +AARA+F  +IMQSFHSTYI L          LLNLDGF+ ED     Q SS
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFYGEDDDRKKQPSS 60

Query: 61  SLGSFERRLFDEYRQLIFHVENNFVPGHAFKNNISFLEVQESALQTNSSSQIQRQFYAVS 110
           SLGSFERRLF+EY QLIF++EN+ VPG+AFKNNISFLEVQES LQT+SSSQIQRQFYA +
Sbjct: 61  SLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFYAAA 120

[Close]

BLAST of Spg003779 vs. NCBI nr
Match: XP_038890718.1 (putative transcription factor bHLH041 isoform X1 [Benincasa hispida])

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-32
Identity = 83/120 (69.17%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC--------FLLNLDGFFRED---ANQASS 60
           ME VFSL +AARA+F  +IMQSFHSTYI L          LLNLDGF+ ED     Q SS
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFYGEDDDRKKQPSS 60

Query: 61  SLGSFERRLFDEYRQLIFHVENNFVPGHAFKNNISFLEVQESALQTNSSSQIQRQFYAVS 110
           SLGSFERRLF+EY QLIF++EN+ VPG+AFKNNISFLEVQES LQT+SSSQIQRQFYA +
Sbjct: 61  SLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFYAAA 120

[Close]

BLAST of Spg003779 vs. NCBI nr
Match: XP_038890719.1 (putative transcription factor bHLH041 isoform X2 [Benincasa hispida])

HSP 1 Score: 147.5 bits (371), Expect = 7.2e-32
Identity = 83/118 (70.34%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC--------FLLNLDGFFRED---ANQASS 60
           ME VFSL +AARA+F  +IMQSFHSTYI L          LLNLDGF+ ED     Q SS
Sbjct: 1   MEIVFSLPQAARANFLQSIMQSFHSTYISLWSYLPHPSNCLLNLDGFYGEDDDRKKQPSS 60

Query: 61  SLGSFERRLFDEYRQLIFHVENNFVPGHAFKNNISFLEVQESALQTNSSSQIQRQFYA 108
           SLGSFERRLF+EY QLIF++EN+ VPG+AFKNNISFLEVQES LQT+SSSQIQRQFYA
Sbjct: 61  SLGSFERRLFNEYTQLIFNLENSLVPGYAFKNNISFLEVQESVLQTHSSSQIQRQFYA 118

[Close]

BLAST of Spg003779 vs. NCBI nr
Match: XP_023537999.1 (uncharacterized protein LOC111798884 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 80/118 (67.80%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC--------FLLNLDGFFR-EDANQASSSL 60
           M+ VFSLDEA RA+F  AIMQSFH TYICL          LLNLD  FR EDANQ SSSL
Sbjct: 1   MDTVFSLDEAHRATFLRAIMQSFHPTYICLWSYLPHPSHCLLNLDALFREEDANQPSSSL 60

Query: 61  GSFERRLFDEYRQLIFHVENNFVPGHAFKNNISFLEVQESALQTNSSSQIQRQFYAVS 110
           GSFERRLFDEY+QL+F+VENN VPGHAF N+ISFLE+ +S L  +SSSQIQ  FYA +
Sbjct: 61  GSFERRLFDEYKQLVFNVENNLVPGHAFNNSISFLELHQSLLHIHSSSQIQSHFYAAA 118

[Close]

BLAST of Spg003779 vs. ExPASy Swiss-Prot
Match: Q9LTS4 (Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 32  FLLNLDGFFREDANQ--ASSSLGSFERRLFDEYRQLIFHVENNFVPGHAFKNNISFLEVQ 91
           +L+++DG++ E + +  +SSS GS  R LF EYRQ +  ++N  VP  AF NN+ ++E++
Sbjct: 10  YLISMDGYYNEASEEPSSSSSSGSLARSLFHEYRQSVIPLQNGHVPSMAFMNNLPYVEIR 69

Query: 92  ESALQTNSSSQIQRQFYAVSV 111
               Q  + +  QR FY + +
Sbjct: 70  PQESQRLAFNDTQRLFYQMKI 90

[Close]

BLAST of Spg003779 vs. ExPASy TrEMBL
Match: A0A6J1FCH4 (uncharacterized protein LOC111444143 OS=Cucurbita moschata OX=3662 GN=LOC111444143 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.6e-31
Identity = 81/120 (67.50%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC--------FLLNLDGFFRE-DANQASSSL 60
           M+ VFSLDEA RA+F  AIMQSFH TYICL          LLNLD  FRE DANQ SSSL
Sbjct: 1   MDTVFSLDEAPRATFLRAIMQSFHPTYICLWSYLPHPSHCLLNLDALFREDDANQPSSSL 60

Query: 61  GSFERRLFDEYRQLIFHVENN--FVPGHAFKNNISFLEVQESALQTNSSSQIQRQFYAVS 110
           GSFERRLFDEY+QL+F+VENN   VPGHAF NNI FLE+ +S L T+SSSQIQ  FYA +
Sbjct: 61  GSFERRLFDEYKQLVFNVENNISLVPGHAFNNNILFLELHQSLLHTHSSSQIQSHFYAAA 120

[Close]

BLAST of Spg003779 vs. ExPASy TrEMBL
Match: A0A6J1HKA4 (uncharacterized protein LOC111465335 OS=Cucurbita maxima OX=3661 GN=LOC111465335 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.7e-29
Identity = 80/124 (64.52%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC--------FLLNLDGFFRE-DANQASSSL 60
           M+ VFSLDEA RA+F  AIMQSFH TYICL          LLNLD  FRE DANQ SSSL
Sbjct: 1   MDTVFSLDEAPRATFLRAIMQSFHPTYICLWSYLPHPSHCLLNLDALFREDDANQPSSSL 60

Query: 61  GSFERRLFDEYRQLIFHVENN------FVPGHAFKNNISFLEVQESALQTNSSSQIQRQF 110
           GSFERRLFDEY+ LIF VENN       VPGHAF NNI FLE+ +S L  +SSSQIQ  F
Sbjct: 61  GSFERRLFDEYKPLIFKVENNVIIMNSLVPGHAFNNNIFFLELHQSLLHAHSSSQIQSHF 120

[Close]

BLAST of Spg003779 vs. ExPASy TrEMBL
Match: A0A6J1DKX4 (putative transcription factor bHLH041 OS=Momordica charantia OX=3673 GN=LOC111021867 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.8e-28
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC-------FLLNLDGFFRE-----DANQAS 60
           ++ VFSLDE +RA+F   +M SFH  YIC+         LLNLD  +RE     D  QAS
Sbjct: 3   LDVVFSLDEGSRATFLRRLMHSFHCIYICVWSHFPLSNCLLNLDRLYREDDDDDDKQQAS 62

Query: 61  SSLGSFERRLFDEYRQLIFHVENNFVPGHAFKNNISFLEVQESALQTNSSSQIQRQFYAV 110
           SSLGSF+RRLF++Y QL+F+V+NN VPGHAF NNISFLE++ES LQT++S QIQRQFYA 
Sbjct: 63  SSLGSFDRRLFNDYTQLVFNVQNNLVPGHAFNNNISFLELRESLLQTHASYQIQRQFYAA 122

[Close]

BLAST of Spg003779 vs. ExPASy TrEMBL
Match: A0A1S3C9K1 (putative transcription factor bHLH041 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498527 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 75/122 (61.48%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC--------FLLNLDGFFREDAN-----QA 60
           ME VFS ++ ARAS  H+IMQS  S+Y+CL          L+NL G FRED +     Q 
Sbjct: 1   MEIVFSFNQDARAS-LHSIMQSVRSSYVCLWSYLPHPSNCLMNLHGLFREDEDDDQKKQP 60

Query: 61  SSSLGSFERRLFDEYRQLIFHVENN--FVPGHAFKNNISFLEVQESALQTNSSSQIQRQF 108
           SSSLGS +RRLF++Y QLIF++ENN   VPGHAFKNNISFLEVQES L T+SSSQIQ QF
Sbjct: 61  SSSLGSCQRRLFNDYTQLIFNLENNLSLVPGHAFKNNISFLEVQESVLLTHSSSQIQTQF 120

[Close]

BLAST of Spg003779 vs. ExPASy TrEMBL
Match: A0A1S3CAK0 (putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498527 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 1   MEFVFSLDEAARASFFHAIMQSFHSTYICLC--------FLLNLDGFFREDAN-----QA 60
           ME VFS ++ ARAS  H+IMQS  S+Y+CL          L+NL G FRED +     Q 
Sbjct: 1   MEIVFSFNQDARAS-LHSIMQSVRSSYVCLWSYLPHPSNCLMNLHGLFREDEDDDQKKQP 60

Query: 61  SSSLGSFERRLFDEYRQLIFHVENN--FVPGHAFKNNISFLEVQESALQTNSSSQIQRQF 110
           SSSLGS +RRLF++Y QLIF++ENN   VPGHAFKNNISFLEVQES L T+SSSQIQ QF
Sbjct: 61  SSSLGSCQRRLFNDYTQLIFNLENNLSLVPGHAFKNNISFLEVQESVLLTHSSSQIQTQF 120

[Close]

BLAST of Spg003779 vs. TAIR 10
Match: AT5G56960.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 32  FLLNLDGFFREDANQ--ASSSLGSFERRLFDEYRQLIFHVENNFVPGHAFKNNISFLEVQ 91
           +L+++DG++ E + +  +SSS GS  R LF EYRQ +  ++N  VP  AF NN+ ++E++
Sbjct: 10  YLISMDGYYNEASEEPSSSSSSGSLARSLFHEYRQSVIPLQNGHVPSMAFMNNLPYVEIR 69

Query: 92  ESALQTNSSSQIQRQFYAVSV 111
               Q  + +  QR FY + +
Sbjct: 70  PQESQRLAFNDTQRLFYQMKI 90

The following BLAST results are available for this feature:

BLAST of Spg003779 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890720.1	5.5e-32	69.17	putative transcription factor bHLH041 isoform X3 [Benincasa hispida]	[more]
XP_038890721.1	5.5e-32	69.17	putative transcription factor bHLH041 isoform X4 [Benincasa hispida]	[more]
XP_038890718.1	5.5e-32	69.17	putative transcription factor bHLH041 isoform X1 [Benincasa hispida]	[more]
XP_038890719.1	7.2e-32	70.34	putative transcription factor bHLH041 isoform X2 [Benincasa hispida]	[more]
XP_023537999.1	2.1e-31	67.80	uncharacterized protein LOC111798884 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg003779 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTS4	1.5e-08	35.80	Putative transcription factor bHLH041 OS=Arabidopsis thaliana OX=3702 GN=BHLH41 ...	[more]

BLAST of Spg003779 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCH4	6.6e-31	67.50	uncharacterized protein LOC111444143 OS=Cucurbita moschata OX=3662 GN=LOC1114441...	[more]
A0A6J1HKA4	4.7e-29	64.52	uncharacterized protein LOC111465335 OS=Cucurbita maxima OX=3661 GN=LOC111465335...	[more]
A0A6J1DKX4	6.8e-28	58.68	putative transcription factor bHLH041 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A1S3C9K1	1.9e-25	61.48	putative transcription factor bHLH041 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3CAK0	1.9e-25	60.48	putative transcription factor bHLH041 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Spg003779 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56960.1	1.1e-09	35.80	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46665:SF1	TRANSCRIPTION FACTOR BHLH041-RELATED	coord: 1..107
IPR044658	Transcription factor bHLH92/bHLH041-like	PANTHER	PTHR46665	TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003779.1	Spg003779.1	mRNA