Spg003702 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003702
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold4: 47914683 .. 47915287 (-)
RNA-Seq Expression	Spg003702
Synteny	Spg003702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATGGCAGCAGATCATCGCAACCTGGACGTTGCTCGAAAAGCAGCCCAACAGCTTTTGCAACTTGATCCAAACGATGCAGGAACATATGTTCTACTATCAAACATATATAGCTCAATGGAAAAGTGGGAAGAATCTAAAAGGATCAGAGAACTAATGGCAAAAAGAAAGTTAAACAAGCCCCCTGGTTGCAGGTTGACTGAGGTTAGTGGAACTGTTCATGAATTTGTGAAAGGGTGATTCCTCTCATCCTGTGAAGAGAAATATATACAATGCTAGATGACATGATTAGTAAGCTGAAGGAAGAAGGCGACATTTCAGAGAAATCAGAAGTCCTTTTCGAGATGGCGACATTCCAGAAACTAGCTATTGCATTTGGACTTATTAGTACAAAACCTGGGACACCAATCCAAATTGTGAAAAATCTTCGTGTTTGCACTGATTGCCACACTGCTACTAAGATCATCTCAAAGGTTTACAAAAGAGTAGTTGTAGAGATCGAAATAGGTTTCACCATTTTAAGGATGGGAGATGTTCTAGTGGAGATTTCTGGTGATCATTCATATATATCAACAGAAGTTCAAGACTGCTGTGCAGTTTGA

mRNA sequence

ATGCCAATGGCAGCAGATCATCGCAACCTGGACGTTGCTCGAAAAGCAGCCCAACAGCTTTTGCAACTTGATCCAAACGATGCAGGAACATATGTTCTACTATCAAACATATATAGCTCAATGGAAAAGTGGGAAGAATCTAAAAGGATCAGAGAACTAATGGCAAAAAGAAAGTTAAACAAGCCCCCTGGTTGCAGGTTGACTGAGCTGAAGGAAGAAGGCGACATTTCAGAGAAATCAGAAGTCCTTTTCGAGATGGCGACATTCCAGAAACTAGCTATTGCATTTGGACTTATTAGTACAAAACCTGGGACACCAATCCAAATTGTGAAAAATCTTCGTGTTTGCACTGATTGCCACACTGCTACTAAGATCATCTCAAAGGTTTACAAAAGAGTAGTTGTAGAGATCGAAATAGGTTTCACCATTTTAAGGATGGGAGATGTTCTAGTGGAGATTTCTGGTGATCATTCATATATATCAACAGAAGTTCAAGACTGCTGTGCAGTTTGA

Coding sequence (CDS)

ATGCCAATGGCAGCAGATCATCGCAACCTGGACGTTGCTCGAAAAGCAGCCCAACAGCTTTTGCAACTTGATCCAAACGATGCAGGAACATATGTTCTACTATCAAACATATATAGCTCAATGGAAAAGTGGGAAGAATCTAAAAGGATCAGAGAACTAATGGCAAAAAGAAAGTTAAACAAGCCCCCTGGTTGCAGGTTGACTGAGCTGAAGGAAGAAGGCGACATTTCAGAGAAATCAGAAGTCCTTTTCGAGATGGCGACATTCCAGAAACTAGCTATTGCATTTGGACTTATTAGTACAAAACCTGGGACACCAATCCAAATTGTGAAAAATCTTCGTGTTTGCACTGATTGCCACACTGCTACTAAGATCATCTCAAAGGTTTACAAAAGAGTAGTTGTAGAGATCGAAATAGGTTTCACCATTTTAAGGATGGGAGATGTTCTAGTGGAGATTTCTGGTGATCATTCATATATATCAACAGAAGTTCAAGACTGCTGTGCAGTTTGA

Protein sequence

MPMAADHRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCRLTELKEEGDISEKSEVLFEMATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVVEIEIGFTILRMGDVLVEISGDHSYISTEVQDCCAV

Homology

[Close]

BLAST of Spg003702 vs. NCBI nr
Match: XP_024182101.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Rosa chinensis] >PRQ46486.1 putative tetratricopeptide-like helical domain, DYW domain-containing protein [Rosa chinensis])

HSP 1 Score: 161.0 bits (406), Expect = 9.0e-36
Identity = 88/170 (51.76%), Postives = 111/170 (65.29%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AA++LL+L+P+D GTYVLLSN+YS MEKWEE+ RIR+LMA+RK+ KPPGC 
Sbjct: 526 HGNLEAAERAAKRLLELNPDDEGTYVLLSNLYSFMEKWEEAVRIRKLMAERKIKKPPGCS 585

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
           L E                               LK+ G + +KSEVLF+M         
Sbjct: 586 LIEVDGIVHEFVKGDSSHPQTTNIYEMLEDMISRLKKAGYVPQKSEVLFDMDEEEKETAL 645

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLIST PGTPI++VKNLRVC+DCHTATK+ISKVY R ++
Sbjct: 646 SLHSEKLAIAFGLISTNPGTPIRVVKNLRVCSDCHTATKLISKVYNREII 695

[Close]

BLAST of Spg003702 vs. NCBI nr
Match: PQQ20230.1 (pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudiflora])

HSP 1 Score: 158.7 bits (400), Expect = 4.5e-35
Identity = 89/170 (52.35%), Postives = 109/170 (64.12%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AAQQLL+LDP+D G YVLLSN+YSSM+KWEE+KRIRELMA+R + K PGC 
Sbjct: 223 HGNLEAAERAAQQLLELDPDDDGAYVLLSNLYSSMKKWEEAKRIRELMAERNVKKAPGCS 282

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
           L E                               LK+ G + EKSEVL ++         
Sbjct: 283 LIEVDGIVHEFVKGDSSHPQSTNIYEMLQDMIERLKKAGYVPEKSEVLLDIDEEEKETAL 342

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLIST PGT I++VKNLRVC+DCHTATKIISKVY+R ++
Sbjct: 343 SLHSEKLAIAFGLISTNPGTTIRVVKNLRVCSDCHTATKIISKVYEREII 392

[Close]

BLAST of Spg003702 vs. NCBI nr
Match: XP_034225178.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Prunus dulcis] >XP_034225201.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Prunus dulcis] >VVA10669.1 PREDICTED: pentatricopeptide [Prunus dulcis] >VVA41861.1 PREDICTED: pentatricopeptide [Prunus dulcis])

HSP 1 Score: 158.3 bits (399), Expect = 5.9e-35
Identity = 89/170 (52.35%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AAQQLL+LDP+D G YVLLSN+YSSM+KWEE+KRIRELMA+R + K PGC 
Sbjct: 532 HGNLEAAERAAQQLLELDPDDDGAYVLLSNLYSSMKKWEEAKRIRELMAERNVKKAPGCS 591

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
           L E                               LK+ G + EKSEVL ++         
Sbjct: 592 LIEVDGIVHEFVKGDSSHPQSTNIYEMLQDMIERLKKAGYVPEKSEVLLDIDEEEKETAL 651

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLIST PGT I++VKNLRVC+DCHTATKIISKVY R ++
Sbjct: 652 SLHSEKLAIAFGLISTNPGTTIRVVKNLRVCSDCHTATKIISKVYNREII 701

[Close]

BLAST of Spg003702 vs. NCBI nr
Match: XP_007203470.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Prunus persica] >ONH98216.1 hypothetical protein PRUPE_7G236200 [Prunus persica])

HSP 1 Score: 158.3 bits (399), Expect = 5.9e-35
Identity = 89/170 (52.35%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AAQQLL+LDP+D G YVLLSN+YSSM+KWEE+KRIRELMA+R + K PGC 
Sbjct: 532 HGNLEAAERAAQQLLELDPDDDGAYVLLSNLYSSMKKWEEAKRIRELMAERNVKKAPGCS 591

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
           L E                               LK+ G + EKSEVL ++         
Sbjct: 592 LIEVDGIVHEFVKGDSSHPQSTHIYEMLQDMIERLKKAGYVPEKSEVLLDIDEEEKETAL 651

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLIST PGT I++VKNLRVC+DCHTATKIISKVY R ++
Sbjct: 652 SLHSEKLAIAFGLISTNPGTTIRVVKNLRVCSDCHTATKIISKVYNREII 701

[Close]

BLAST of Spg003702 vs. NCBI nr
Match: XP_008242743.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Prunus mume])

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-34
Identity = 88/170 (51.76%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AAQQLL+LDP+D G YVLLSN+YSSM++WEE+KRIRELMA+R + K PGC 
Sbjct: 532 HGNLEAAERAAQQLLELDPDDDGAYVLLSNLYSSMKRWEEAKRIRELMAERNVKKAPGCS 591

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
           L E                               LK+ G + EKSEVL ++         
Sbjct: 592 LIEVDGIVHEFVKGDSSHPQSTNIYEMLQDMIERLKKAGYVPEKSEVLLDIDEEEKETAL 651

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLIST PGT I++VKNLRVC+DCHTATKIISKVY R ++
Sbjct: 652 CVHSEKLAIAFGLISTNPGTTIRVVKNLRVCSDCHTATKIISKVYNREII 701

[Close]

BLAST of Spg003702 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24
Identity = 66/170 (38.82%), Postives = 93/170 (54.71%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H N+++    A+ L++++P + G+YVLLSNIY+S  +W E  + R L+  + + K PGC 
Sbjct: 551 HGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCS 610

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEMAT------- 126
             E                               L++ G + + SEVL EM         
Sbjct: 611 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGAL 670

Query: 127 ---FQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLISTKPGT + IVKNLRVC +CH ATK+ISK+YKR ++
Sbjct: 671 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 720

[Close]

BLAST of Spg003702 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H++ ++AR  +++L +LDP++ G +VLLSNI+S+   + ++  +R+   KRKL K PG  
Sbjct: 602 HKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYT 661

Query: 67  LTELKE-------------------------EG----------------DISEKSEVLFE 126
           L E+ E                         EG                D+ E+   L  
Sbjct: 662 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMV 721

Query: 127 MATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               ++LAIAFGLI+T+PGT I+I+KNLRVC DCHT TK+ISK+ +RV+V
Sbjct: 722 KVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIV 771

[Close]

BLAST of Spg003702 vs. ExPASy Swiss-Prot
Match: Q7Y211 (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-22
Identity = 62/170 (36.47%), Postives = 89/170 (52.35%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL++   AAQ L+QL+PN A  YVLL+NIYSS   W+++  +R  M ++ + K PGC 
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
             E                               +++EG + + S VL  +         
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILL 819

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFG+++T PGT I++ KNLRVC DCH ATK ISK+  R ++
Sbjct: 820 CGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREII 869

[Close]

BLAST of Spg003702 vs. ExPASy Swiss-Prot
Match: Q56XI1 (Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H18 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H  LDVA   A++L++++P ++GTY+LLSN+Y+S  +W +   +R+LM  R + K PGC 
Sbjct: 514 HSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCS 573

Query: 67  LTE--------------------------------LKEEG----------DISEKSEVLF 126
            TE                                L+E G          D+ E+ +V  
Sbjct: 574 WTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNS 633

Query: 127 EMATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
                ++LA+A+ L+    G PI+++KNLRVC+DCHTA KIISKV +R ++
Sbjct: 634 LKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREII 684

[Close]

BLAST of Spg003702 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-21
Identity = 55/170 (32.35%), Postives = 92/170 (54.12%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H+NL++A K A+++  +D  + G YVL+ N+Y+S  +W+E  ++R  M K+ L K P C 
Sbjct: 525 HKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACS 584

Query: 67  LTELK-------------------------------EEGDISEKSEVLFEM--------- 126
             E+K                               +EG +++ S VL ++         
Sbjct: 585 WIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELL 644

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               ++LA+AFG+I+T+PGT I++ KN+R+CTDCH A K ISK+ +R ++
Sbjct: 645 FGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREII 694

[Close]

BLAST of Spg003702 vs. ExPASy TrEMBL
Match: A0A2P6RJ71 (Putative tetratricopeptide-like helical domain, DYW domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0089561 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 4.4e-36
Identity = 88/170 (51.76%), Postives = 111/170 (65.29%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AA++LL+L+P+D GTYVLLSN+YS MEKWEE+ RIR+LMA+RK+ KPPGC 
Sbjct: 526 HGNLEAAERAAKRLLELNPDDEGTYVLLSNLYSFMEKWEEAVRIRKLMAERKIKKPPGCS 585

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
           L E                               LK+ G + +KSEVLF+M         
Sbjct: 586 LIEVDGIVHEFVKGDSSHPQTTNIYEMLEDMISRLKKAGYVPQKSEVLFDMDEEEKETAL 645

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLIST PGTPI++VKNLRVC+DCHTATK+ISKVY R ++
Sbjct: 646 SLHSEKLAIAFGLISTNPGTPIRVVKNLRVCSDCHTATKLISKVYNREII 695

[Close]

BLAST of Spg003702 vs. ExPASy TrEMBL
Match: A0A314ZNK1 (Pentatricopeptide repeat-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_15876 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.2e-35
Identity = 89/170 (52.35%), Postives = 109/170 (64.12%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AAQQLL+LDP+D G YVLLSN+YSSM+KWEE+KRIRELMA+R + K PGC 
Sbjct: 223 HGNLEAAERAAQQLLELDPDDDGAYVLLSNLYSSMKKWEEAKRIRELMAERNVKKAPGCS 282

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
           L E                               LK+ G + EKSEVL ++         
Sbjct: 283 LIEVDGIVHEFVKGDSSHPQSTNIYEMLQDMIERLKKAGYVPEKSEVLLDIDEEEKETAL 342

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLIST PGT I++VKNLRVC+DCHTATKIISKVY+R ++
Sbjct: 343 SLHSEKLAIAFGLISTNPGTTIRVVKNLRVCSDCHTATKIISKVYEREII 392

[Close]

BLAST of Spg003702 vs. ExPASy TrEMBL
Match: M5VTK1 (DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G236200 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 89/170 (52.35%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AAQQLL+LDP+D G YVLLSN+YSSM+KWEE+KRIRELMA+R + K PGC 
Sbjct: 532 HGNLEAAERAAQQLLELDPDDDGAYVLLSNLYSSMKKWEEAKRIRELMAERNVKKAPGCS 591

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
           L E                               LK+ G + EKSEVL ++         
Sbjct: 592 LIEVDGIVHEFVKGDSSHPQSTHIYEMLQDMIERLKKAGYVPEKSEVLLDIDEEEKETAL 651

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLIST PGT I++VKNLRVC+DCHTATKIISKVY R ++
Sbjct: 652 SLHSEKLAIAFGLISTNPGTTIRVVKNLRVCSDCHTATKIISKVYNREII 701

[Close]

BLAST of Spg003702 vs. ExPASy TrEMBL
Match: A0A2N9FQM1 (DYW_deaminase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17414 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 86/170 (50.59%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AAQQLL+LDPN  GTYVLLS IYSS+ KWEE+K+IRE+MA+R + KPPGC 
Sbjct: 469 HGNLEAAERAAQQLLKLDPNHGGTYVLLSKIYSSLRKWEEAKKIREVMAERNIKKPPGCS 528

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEMAT------- 126
           L E                               LK+ G + +KSEVLF+M         
Sbjct: 529 LIEVDGVVHEFIKGDSSHPQSSEIYDMLEDMINRLKKAGYVPDKSEVLFDMEEEEKETAL 588

Query: 127 ---FQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGL+ST P TPI++VKNLRVC+DCHTATK+IS+VY R ++
Sbjct: 589 SLHSEKLAIAFGLVSTAPRTPIRVVKNLRVCSDCHTATKLISRVYSREII 638

[Close]

BLAST of Spg003702 vs. ExPASy TrEMBL
Match: A0A5E4GQU3 (PREDICTED: pentatricopeptide OS=Prunus dulcis OX=3755 GN=ALMOND_2B006710 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 89/170 (52.35%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL+ A +AAQQLL+LDP+D G YVLLSN+YSSM+KWEE+KRIRELMA+R + K PGC 
Sbjct: 532 HGNLEAAERAAQQLLELDPDDDGAYVLLSNLYSSMKKWEEAKRIRELMAERNVKKAPGCS 591

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
           L E                               LK+ G + EKSEVL ++         
Sbjct: 592 LIEVDGIVHEFVKGDSSHPQSTNIYEMLQDMIERLKKAGYVPEKSEVLLDIDEEEKETAL 651

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLIST PGT I++VKNLRVC+DCHTATKIISKVY R ++
Sbjct: 652 SLHSEKLAIAFGLISTNPGTTIRVVKNLRVCSDCHTATKIISKVYNREII 701

[Close]

BLAST of Spg003702 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-25
Identity = 66/170 (38.82%), Postives = 93/170 (54.71%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H N+++    A+ L++++P + G+YVLLSNIY+S  +W E  + R L+  + + K PGC 
Sbjct: 551 HGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCS 610

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEMAT------- 126
             E                               L++ G + + SEVL EM         
Sbjct: 611 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGAL 670

Query: 127 ---FQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFGLISTKPGT + IVKNLRVC +CH ATK+ISK+YKR ++
Sbjct: 671 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 720

[Close]

BLAST of Spg003702 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 8.5e-24
Identity = 63/170 (37.06%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H++ ++AR  +++L +LDP++ G +VLLSNI+S+   + ++  +R+   KRKL K PG  
Sbjct: 602 HKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYT 661

Query: 67  LTELKE-------------------------EG----------------DISEKSEVLFE 126
           L E+ E                         EG                D+ E+   L  
Sbjct: 662 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMV 721

Query: 127 MATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               ++LAIAFGLI+T+PGT I+I+KNLRVC DCHT TK+ISK+ +RV+V
Sbjct: 722 KVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIV 771

[Close]

BLAST of Spg003702 vs. TAIR 10
Match: AT3G57430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 62/170 (36.47%), Postives = 89/170 (52.35%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H NL++   AAQ L+QL+PN A  YVLL+NIYSS   W+++  +R  M ++ + K PGC 
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759

Query: 67  LTE-------------------------------LKEEGDISEKSEVLFEM--------- 126
             E                               +++EG + + S VL  +         
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILL 819

Query: 127 -ATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLAIAFG+++T PGT I++ KNLRVC DCH ATK ISK+  R ++
Sbjct: 820 CGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREII 869

[Close]

BLAST of Spg003702 vs. TAIR 10
Match: AT1G09410.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPGCR 66
           H  LDVA   A++L++++P ++GTY+LLSN+Y+S  +W +   +R+LM  R + K PGC 
Sbjct: 514 HSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCS 573

Query: 67  LTE--------------------------------LKEEG----------DISEKSEVLF 126
            TE                                L+E G          D+ E+ +V  
Sbjct: 574 WTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNS 633

Query: 127 EMATFQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
                ++LA+A+ L+    G PI+++KNLRVC+DCHTA KIISKV +R ++
Sbjct: 634 LKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREII 684

[Close]

BLAST of Spg003702 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-22
Identity = 61/170 (35.88%), Postives = 94/170 (55.29%), Query Frame = 0


Query: 7   HRNLDVARKAAQQLLQLDPNDAGTYVLLSNIYSSMEKWEESKRIRELMAKRKLNKPPG-- 66
           H N+++A +A+++L  L+P +AG YVLL++IY+  + W+E KR+++L+  R L K PG  
Sbjct: 467 HGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRC 526

Query: 67  ----------------------------CRLTE-LKEEGDISEKSEVLFEMAT------- 126
                                        +L E +KE+G I +   VL+E+ T       
Sbjct: 527 WMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIV 586

Query: 127 ---FQKLAIAFGLISTKPGTPIQIVKNLRVCTDCHTATKIISKVYKRVVV 136
               +KLA+AFGLI+T  G PI+I KNLR+C DCH  TK ISK  ++ ++
Sbjct: 587 LGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEIL 636

The following BLAST results are available for this feature:

BLAST of Spg003702 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024182101.1	9.0e-36	51.76	pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Rosa chine...	[more]
PQQ20230.1	4.5e-35	52.35	pentatricopeptide repeat-containing protein [Prunus yedoensis var. nudiflora]	[more]
XP_034225178.1	5.9e-35	52.35	pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Prunu...	[more]
XP_007203470.1	5.9e-35	52.35	pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Prunus per...	[more]
XP_008242743.1	1.0e-34	51.76	PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-...	[more]

BLAST of Spg003702 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN01	1.7e-24	38.82	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9SUH6	1.2e-22	37.06	Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX...	[more]
Q7Y211	4.5e-22	36.47	Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop...	[more]
Q56XI1	1.7e-21	34.50	Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidop...	[more]
Q9LW63	2.9e-21	32.35	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]

BLAST of Spg003702 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P6RJ71	4.4e-36	51.76	Putative tetratricopeptide-like helical domain, DYW domain-containing protein OS...	[more]
A0A314ZNK1	2.2e-35	52.35	Pentatricopeptide repeat-containing protein OS=Prunus yedoensis var. nudiflora O...	[more]
M5VTK1	2.8e-35	52.35	DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G236...	[more]
A0A2N9FQM1	2.8e-35	50.59	DYW_deaminase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS...	[more]
A0A5E4GQU3	2.8e-35	52.35	PREDICTED: pentatricopeptide OS=Prunus dulcis OX=3755 GN=ALMOND_2B006710 PE=3 SV...	[more]

BLAST of Spg003702 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08070.1	1.2e-25	38.82	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G30700.1	8.5e-24	37.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G57430.1	3.2e-23	36.47	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G09410.1	1.2e-22	34.50	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G46790.1	2.1e-22	35.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 89..133 e-value: 4.1E-13 score: 49.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 3..85 e-value: 2.6E-5 score: 25.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 8..49
None	No IPR available	PANTHER	PTHR47928:SF46	SUBFAMILY NOT NAMED	coord: 7..73
None	No IPR available	PANTHER	PTHR47928:SF46	SUBFAMILY NOT NAMED	coord: 77..132
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 7..73
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 77..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003702.1	Spg003702.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding