Spg003556 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003556
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold4: 48924948 .. 48925442 (-)
RNA-Seq Expression	Spg003556
Synteny	Spg003556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAACTCGGAAGCGGCATGACTTTCTTCCGGCGGAGGACTCCACGCAGAAGCGGCCGCGAGCGGCGGAGGATGTGGACGACGACATTCTGGCTTGGATTTCGCTCGAGGAGGAAACGGTCGGCGAACTCATGATGCTTCTCGACGACGCCGAGAAAAGCCGGCCGATGGCCGAGAAAGTGAAGTTCATCGACGATCCGTACTCCTCCGCGATGATTTTCCAATCGTCGTCGTCGTACGTCACGATCAACGGAAACGAAGAGAGTTGCGGTTCGTCTTTCTCCGAATCGGACTCGTCGGTGATGGCGAGCGTCGACATGAACGGAGCGAGGATTAAACTGATGGAAGTCGATTCCGAAACCGTGGAGAAATGGAAGATGTGGAGTGAGGATCGGTTGAAGGCGGAGGAGGCCTCGGCCGTATCGGACGGATTCAGTTGGGATGAGGATGATTTGGCGAGGTTCATCGGCGATGAAGAACAGATTTTCTGA

mRNA sequence

ATGGAAGAAACTCGGAAGCGGCATGACTTTCTTCCGGCGGAGGACTCCACGCAGAAGCGGCCGCGAGCGGCGGAGGATGTGGACGACGACATTCTGGCTTGGATTTCGCTCGAGGAGGAAACGGTCGGCGAACTCATGATGCTTCTCGACGACGCCGAGAAAAGCCGGCCGATGGCCGAGAAAGTGAAGTTCATCGACGATCCGTACTCCTCCGCGATGATTTTCCAATCGTCGTCGTCGTACGTCACGATCAACGGAAACGAAGAGAGTTGCGGTTCGTCTTTCTCCGAATCGGACTCGTCGGTGATGGCGAGCGTCGACATGAACGGAGCGAGGATTAAACTGATGGAAGTCGATTCCGAAACCGTGGAGAAATGGAAGATGTGGAGTGAGGATCGGTTGAAGGCGGAGGAGGCCTCGGCCGTATCGGACGGATTCAGTTGGGATGAGGATGATTTGGCGAGGTTCATCGGCGATGAAGAACAGATTTTCTGA

Coding sequence (CDS)

ATGGAAGAAACTCGGAAGCGGCATGACTTTCTTCCGGCGGAGGACTCCACGCAGAAGCGGCCGCGAGCGGCGGAGGATGTGGACGACGACATTCTGGCTTGGATTTCGCTCGAGGAGGAAACGGTCGGCGAACTCATGATGCTTCTCGACGACGCCGAGAAAAGCCGGCCGATGGCCGAGAAAGTGAAGTTCATCGACGATCCGTACTCCTCCGCGATGATTTTCCAATCGTCGTCGTCGTACGTCACGATCAACGGAAACGAAGAGAGTTGCGGTTCGTCTTTCTCCGAATCGGACTCGTCGGTGATGGCGAGCGTCGACATGAACGGAGCGAGGATTAAACTGATGGAAGTCGATTCCGAAACCGTGGAGAAATGGAAGATGTGGAGTGAGGATCGGTTGAAGGCGGAGGAGGCCTCGGCCGTATCGGACGGATTCAGTTGGGATGAGGATGATTTGGCGAGGTTCATCGGCGATGAAGAACAGATTTTCTGA

Protein sequence

MEETRKRHDFLPAEDSTQKRPRAAEDVDDDILAWISLEEETVGELMMLLDDAEKSRPMAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLMEVDSETVEKWKMWSEDRLKAEEASAVSDGFSWDEDDLARFIGDEEQIF

Homology

[Close]

BLAST of Spg003556 vs. NCBI nr
Match: XP_022965986.1 (uncharacterized protein LOC111465706 [Cucurbita maxima])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 147/167 (88.02%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAA---EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 VDSETVEKWKMWSEDRLKAEEASAVSDGFSWDEDDLARFIGDEEQIF 165
           +DS TVEKWK+W     K EEAS+VS+GFSWDEDDLARFIGDEEQIF
Sbjct: 121 IDSATVEKWKLW-----KTEEASSVSEGFSWDEDDLARFIGDEEQIF 162

[Close]

BLAST of Spg003556 vs. NCBI nr
Match: XP_038890889.1 (uncharacterized protein LOC120080324 [Benincasa hispida])

HSP 1 Score: 275.0 bits (702), Expect = 4.1e-70
Identity = 145/169 (85.80%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRA----AEDVDDDILAWISLEEETVGELMMLLDDAEKSR 60
           M+E+RKRH+F+P E ST+KRPR     AEDVDDDILAWIS+EEETVGELMMLLDD EKSR
Sbjct: 1   MDESRKRHEFVPPEASTEKRPRVAVKEAEDVDDDILAWISVEEETVGELMMLLDDVEKSR 60

Query: 61  PMAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLM 120
           PM EKVKFIDDPYSSA+IFQSSSSYVTINGNEESCGSSFSESDSS+MASVDMNGARIKLM
Sbjct: 61  PMEEKVKFIDDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKLM 120

Query: 121 EVDSETVEKWKMWSEDRLK-AEEASAVSDGFSWDEDDLARFIGDEEQIF 165
           E+DSETVEKWK+WSEDRLK  EE SAV DGF WDEDDLARFIGDEEQIF
Sbjct: 121 EIDSETVEKWKLWSEDRLKEEEETSAVLDGFCWDEDDLARFIGDEEQIF 169

[Close]

BLAST of Spg003556 vs. NCBI nr
Match: XP_023538157.1 (uncharacterized protein LOC111799012 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 146/167 (87.43%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAA---EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 VDSETVEKWKMWSEDRLKAEEASAVSDGFSWDEDDLARFIGDEEQIF 165
           +DS TVEKWK+W     K+EEAS+VS+G SWDEDDLARFIGDEEQIF
Sbjct: 121 IDSATVEKWKLW-----KSEEASSVSEGSSWDEDDLARFIGDEEQIF 162

[Close]

BLAST of Spg003556 vs. NCBI nr
Match: KAG6586479.1 (hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021338.1 hypothetical protein SDJN02_18027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.6 bits (693), Expect = 4.6e-69
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAA---EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 VDSETVEKWKMWSEDRLKAEEASAVSDGFSWDEDDLARFIGDEEQIF 165
           +DS TVEKWK+W     K+EE S++S+G SWDEDDLARFIGDEEQIF
Sbjct: 121 IDSATVEKWKLW-----KSEEVSSISEGSSWDEDDLARFIGDEEQIF 162

[Close]

BLAST of Spg003556 vs. NCBI nr
Match: XP_022938092.1 (uncharacterized protein LOC111444281 [Cucurbita moschata])

HSP 1 Score: 271.2 bits (692), Expect = 6.0e-69
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAA---EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 VDSETVEKWKMWSEDRLKAEEASAVSDGFSWDEDDLARFIGDEEQIF 165
           +DS TVEKWK+W     K+EEAS++S+G SWDEDDLARFIGDEE IF
Sbjct: 121 IDSATVEKWKLW-----KSEEASSISEGSSWDEDDLARFIGDEEHIF 162

[Close]

BLAST of Spg003556 vs. ExPASy TrEMBL
Match: A0A6J1HN50 (uncharacterized protein LOC111465706 OS=Cucurbita maxima OX=3661 GN=LOC111465706 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.0e-71
Identity = 147/167 (88.02%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAA---EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 VDSETVEKWKMWSEDRLKAEEASAVSDGFSWDEDDLARFIGDEEQIF 165
           +DS TVEKWK+W     K EEAS+VS+GFSWDEDDLARFIGDEEQIF
Sbjct: 121 IDSATVEKWKLW-----KTEEASSVSEGFSWDEDDLARFIGDEEQIF 162

[Close]

BLAST of Spg003556 vs. ExPASy TrEMBL
Match: A0A6J1FD19 (uncharacterized protein LOC111444281 OS=Cucurbita moschata OX=3662 GN=LOC111444281 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.9e-69
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPRAA---EDVDDDILAWISLEEETVGELMMLLDDAEKSRP 60
           MEETRKRHDF+PAE+STQKRPRAA   EDV +DILAWIS+EEETVGELMMLLDDAEKSRP
Sbjct: 1   MEETRKRHDFVPAENSTQKRPRAAAAVEDVGNDILAWISVEEETVGELMMLLDDAEKSRP 60

Query: 61  MAEKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120
           MAEKVKFIDDPYSSAMIFQSSSS+VTINGNEESCGSSFSESDSSVMASVDMNGARIKLME
Sbjct: 61  MAEKVKFIDDPYSSAMIFQSSSSFVTINGNEESCGSSFSESDSSVMASVDMNGARIKLME 120

Query: 121 VDSETVEKWKMWSEDRLKAEEASAVSDGFSWDEDDLARFIGDEEQIF 165
           +DS TVEKWK+W     K+EEAS++S+G SWDEDDLARFIGDEE IF
Sbjct: 121 IDSATVEKWKLW-----KSEEASSISEGSSWDEDDLARFIGDEEHIF 162

[Close]

BLAST of Spg003556 vs. ExPASy TrEMBL
Match: A0A5A7UZZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00520 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.1e-63
Identity = 136/169 (80.47%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPR-AAEDVDDDILAWISLEEETVGELMMLLDDAEKSRPMA 60
           MEE+R  H+F+  E ST+KR R AAED+DDDILAWISLEEETVGELMMLLDD EKSRP+ 
Sbjct: 1   MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60

Query: 61  EKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLMEVD 120
           EKVKFI+DPYSSA+IFQSSSSYVTINGNEESCGSSFSESDSS+MASVDMNGARIK+ME+D
Sbjct: 61  EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120

Query: 121 SETVEKWKMWSEDRL----KAEEASAVSDG-FSWDEDDLARFIGDEEQI 164
           SETVEKWKMWSED L    + EE S V DG  SWDEDDLARF+GDEEQI
Sbjct: 121 SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQI 169

[Close]

BLAST of Spg003556 vs. ExPASy TrEMBL
Match: A0A1S3CB71 (uncharacterized protein LOC103498512 OS=Cucumis melo OX=3656 GN=LOC103498512 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.1e-63
Identity = 136/169 (80.47%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPR-AAEDVDDDILAWISLEEETVGELMMLLDDAEKSRPMA 60
           MEE+R  H+F+  E ST+KR R AAED+DDDILAWISLEEETVGELMMLLDD EKSRP+ 
Sbjct: 1   MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60

Query: 61  EKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLMEVD 120
           EKVKFI+DPYSSA+IFQSSSSYVTINGNEESCGSSFSESDSS+MASVDMNGARIK+ME+D
Sbjct: 61  EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120

Query: 121 SETVEKWKMWSEDRL----KAEEASAVSDG-FSWDEDDLARFIGDEEQI 164
           SETVEKWKMWSED L    + EE S V DG  SWDEDDLARF+GDEEQI
Sbjct: 121 SETVEKWKMWSEDGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQI 169

[Close]

BLAST of Spg003556 vs. ExPASy TrEMBL
Match: A0A5D3CG58 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00940 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 135/169 (79.88%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MEETRKRHDFLPAEDSTQKRPR-AAEDVDDDILAWISLEEETVGELMMLLDDAEKSRPMA 60
           MEE+R  H+F+  E ST+KR R AAED+DDDILAWISLEEETVGELMMLLDD EKSRP+ 
Sbjct: 1   MEESRNTHEFVRTEASTEKRQRPAAEDMDDDILAWISLEEETVGELMMLLDDEEKSRPVE 60

Query: 61  EKVKFIDDPYSSAMIFQSSSSYVTINGNEESCGSSFSESDSSVMASVDMNGARIKLMEVD 120
           EKVKFI+DPYSSA+IFQSSSSYVTINGNEESCGSSFSESDSS+MASVDMNGARIK+ME+D
Sbjct: 61  EKVKFIEDPYSSAVIFQSSSSYVTINGNEESCGSSFSESDSSMMASVDMNGARIKVMEID 120

Query: 121 SETVEKWKMWSEDRL----KAEEASAVSDG-FSWDEDDLARFIGDEEQI 164
           SETVEKWKMWSE+ L    + EE S V DG  SWDEDDLARF+GDEEQI
Sbjct: 121 SETVEKWKMWSENGLMKEEEEEEVSGVLDGIISWDEDDLARFVGDEEQI 169

[Close]

BLAST of Spg003556 vs. TAIR 10
Match: AT5G56880.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-17
Identity = 55/135 (40.74%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 38  EEETVGELMMLLDDAEKSRPMAE------------KVKFIDDPYSSAMIFQSSSSYVTIN 97
           +E T  E+M L++ +  +    E            +V+FIDDPY+  ++ QSSS Y+TIN
Sbjct: 33  DEYTPDEIMSLVESSSPTMTTTEIEGTNFSGEGSFRVRFIDDPYAMPVVVQSSSGYITIN 92

Query: 98  GNEESCGSSFSESDSSVMASVDMNGARIKLMEVDSETVEKWKMWSEDRLKAEEASAVSDG 157
            NEESCG SFS+SDSSVMASVD +G      E  +   EK   WS + ++A E       
Sbjct: 93  VNEESCGPSFSDSDSSVMASVDASGLFGCCFEYGN---EKGGAWSTNEVRASE------- 152

Query: 158 FSWDEDDLARFIGDE 161
           + W++D LARF+G++
Sbjct: 153 YEWNDDMLARFLGED 157

The following BLAST results are available for this feature:

BLAST of Spg003556 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965986.1	1.9e-70	88.02	uncharacterized protein LOC111465706 [Cucurbita maxima]	[more]
XP_038890889.1	4.1e-70	85.80	uncharacterized protein LOC120080324 [Benincasa hispida]	[more]
XP_023538157.1	1.2e-69	87.43	uncharacterized protein LOC111799012 [Cucurbita pepo subsp. pepo]	[more]
KAG6586479.1	4.6e-69	86.23	hypothetical protein SDJN03_19212, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938092.1	6.0e-69	86.23	uncharacterized protein LOC111444281 [Cucurbita moschata]	[more]

BLAST of Spg003556 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg003556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HN50	9.0e-71	88.02	uncharacterized protein LOC111465706 OS=Cucurbita maxima OX=3661 GN=LOC111465706...	[more]
A0A6J1FD19	2.9e-69	86.23	uncharacterized protein LOC111444281 OS=Cucurbita moschata OX=3662 GN=LOC1114442...	[more]
A0A5A7UZZ9	4.1e-63	80.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CB71	4.1e-63	80.47	uncharacterized protein LOC103498512 OS=Cucumis melo OX=3656 GN=LOC103498512 PE=...	[more]
A0A5D3CG58	1.5e-62	79.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg003556 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56880.1	5.7e-17	40.74	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR37265	OS01G0195300 PROTEIN	coord: 1..161
None	No IPR available	PANTHER	PTHR37265:SF5	BNACNNG68970D PROTEIN	coord: 1..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003556.1	Spg003556.1	mRNA