Spg003518 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003518
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold4: 47628690 .. 47629751 (-)
RNA-Seq Expression	Spg003518
Synteny	Spg003518

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTCTCGTGCTCAGGGATACACGTGTCAATTACGGTTGAGCTATACTCATTTTGAAAAATTTAGGTTAAATACAATAAAAAATATAATTAATTAAAATAATTTTTTACGCAAGTGTGACAGTAAAAAACAAAAATAATCAAAATAAAATAAAAATGAAAATTGTTAAAGTATCTAAATATAGTTCAATGAAAAAAGTTCTTAGTCGAAAGTTTAATTCTCCACCCCATGAAAAAAAAAATATAACTCAAGTCTCTTTCCAGCGTGATCGTAGTTCAATTACTAGTCGGGTCAGGTTTGAATCTTCATCCAACCCTCTATAGACAACAAAATATTAAAAAAACAAAAAAGTATCAACAAGTCTCTCTCAATTTCTCAAACCTATTCAATTTCTCTCTTTCTATAGAAAATTACACACCAACAAACTTCCTAATTTCCTCTCCAAATATCTCATTCATCCTCCATTTACTTTCCATTATTTTTCTTCCTAAAAAAAAATCTAATAATTATTAGATATCATGTCTTCTTCCATTTTGAGCTCCCAAGTAATGGCTATGGCTTTTGCAGCTCTCTCAGGCACTGTCATCTTCCTCTCCTTTTGCCTCCATAAATCCCACCCCTCAATTTCTTCTGGTAAGCAATTTCCATCTCCCAAAAAAAAAAAAAAAACTTCAAAATTTTGTTAGAAGGCCATTAATTTTCAATTTTATTCTCTAATAAGTTTTTTTTTTTTTTTTTTTTTTTTGAAGTGGGGAAGAAGAAAGAGATGAAGAAGAAGATAAGAAAAAGAGTTCACTTTGCAGAGGATTTGGCCATAAGTAATGAAGAGTTGCAGAGGAAAAAAGGCTTAATTTTGGGTTCATCGTCGCCGGCGGGAAGAGCTCCGCCGTCGTGTTTGACGAGCCACGGCGGAGGAGGCGGCGGAATGCCGGCCAATAGGGTGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCAAAGGATGGCATATTCTCTTTAATTCAACAACTTTCATTTTTTATTTTATTTTTTCTGTTTTGTTATTCTCTTTTCTTTGTC

mRNA sequence

ATGTCTTCTTCCATTTTGAGCTCCCAAGTAATGGCTATGGCTTTTGCAGCTCTCTCAGGCACTGTCATCTTCCTCTCCTTTTGCCTCCATAAATCCCACCCCTCAATTTCTTCTGTGGGGAAGAAGAAAGAGATGAAGAAGAAGATAAGAAAAAGAGTTCACTTTGCAGAGGATTTGGCCATAAGTAATGAAGAGTTGCAGAGGAAAAAAGGCTTAATTTTGGGTTCATCGTCGCCGGCGGGAAGAGCTCCGCCGTCGTGTTTGACGAGCCACGGCGGAGGAGGCGGCGGAATGCCGGCCAATAGGGTGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCAAAGGATGGCATATTCTCTTTAA

Coding sequence (CDS)

ATGTCTTCTTCCATTTTGAGCTCCCAAGTAATGGCTATGGCTTTTGCAGCTCTCTCAGGCACTGTCATCTTCCTCTCCTTTTGCCTCCATAAATCCCACCCCTCAATTTCTTCTGTGGGGAAGAAGAAAGAGATGAAGAAGAAGATAAGAAAAAGAGTTCACTTTGCAGAGGATTTGGCCATAAGTAATGAAGAGTTGCAGAGGAAAAAAGGCTTAATTTTGGGTTCATCGTCGCCGGCGGGAAGAGCTCCGCCGTCGTGTTTGACGAGCCACGGCGGAGGAGGCGGCGGAATGCCGGCCAATAGGGTGGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCAAAGGATGGCATATTCTCTTTAA

Protein sequence

MSSSILSSQVMAMAFAALSGTVIFLSFCLHKSHPSISSVGKKKEMKKKIRKRVHFAEDLAISNEELQRKKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYSL

Homology

[Close]

BLAST of Spg003518 vs. NCBI nr
Match: XP_038890799.1 (uncharacterized protein LOC120080255 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 8.2e-39
Identity = 104/126 (82.54%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MSSSILSSQVMAMAFAALSGTVI-FLSFCLHKSHPSISSVGKKKEM--KKKIRKRVHFAE 60
           MSSSILSSQ MAMAFAALSGTVI  LSFCLHKS PSISSV KKKEM  KKK RKRVHFA+
Sbjct: 1   MSSSILSSQSMAMAFAALSGTVIVILSFCLHKSDPSISSVVKKKEMEKKKKGRKRVHFAD 60

Query: 61  DLAI-SNEELQRKKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQ 120
           DLAI   EELQ KKGLILGSS P GR P   LTS GGGGGGMPANRVALYNGILRDRLV 
Sbjct: 61  DLAIFGTEELQIKKGLILGSSPPPGRGPARRLTSTGGGGGGMPANRVALYNGILRDRLVH 120

Query: 121 RMAYSL 123
           R+AYSL
Sbjct: 121 RIAYSL 126

[Close]

BLAST of Spg003518 vs. NCBI nr
Match: XP_008457539.1 (PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 8.8e-33
Identity = 96/127 (75.59%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 2   SSSILSSQVMAMAFAALS-GTVI-FLSFCLHKSHPSISSVGKKKEM--KKKIRKRVHFAE 61
           SSSILSSQ MAMAFAALS GTVI  LS  LHKSHPSISSV +KKEM  KKK RKRVHF++
Sbjct: 3   SSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVEKKEMEKKKKGRKRVHFSD 62

Query: 62  DLAI--SNEELQRKKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLV 121
           DLAI  S EEL+RKK +ILGSS   GRA    LT +GGGGGGMPANR ALYNGILRDRLV
Sbjct: 63  DLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLV 122

Query: 122 QRMAYSL 123
            R+AYSL
Sbjct: 123 HRIAYSL 129

[Close]

BLAST of Spg003518 vs. NCBI nr
Match: KGN60682.1 (hypothetical protein Csa_019276 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 5.7e-32
Identity = 91/127 (71.65%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 1   MSSSILSSQVMAMAFAALSGTVI-FLSFCLHKSHPSISSVGKK--KEMKKKIRKRVHFAE 60
           MSSSILSSQ MAMAFA   GTVI  LSF LHKSHPSISSV KK  KE KKK RK+VHF++
Sbjct: 1   MSSSILSSQSMAMAFA---GTVIVVLSFYLHKSHPSISSVMKKKEKEKKKKGRKKVHFSD 60

Query: 61  DLAI--SNEELQRKKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLV 120
           DLAI  S ++L+RKK ++LGSS P+GRAP   LT+ GGGGGG+PANR ALYNGILR+RLV
Sbjct: 61  DLAIFSSTKDLKRKKDMMLGSSPPSGRAPARPLTTSGGGGGGLPANRAALYNGILRNRLV 120

Query: 121 QRMAYSL 123
            R+AYSL
Sbjct: 121 HRIAYSL 124

[Close]

BLAST of Spg003518 vs. NCBI nr
Match: XP_022946911.1 (uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata])

HSP 1 Score: 140.6 bits (353), Expect = 9.1e-30
Identity = 85/114 (74.56%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 11  MAMAFAALSGTV-IFLSFCLHKSHPSISSVGKKKEMKKKIRKRVHFAEDLAI-SNEELQR 70
           MAMA AALSG V + LSF   KS  S+SSV KK   KKK RKRVHFA+D A+ S EELQR
Sbjct: 1   MAMAMAALSGAVAVVLSFRHRKSAASVSSVVKK---KKKGRKRVHFADDSAVCSTEELQR 60

Query: 71  KKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYSL 123
           K GLILG S P GRAPP  LTSHGGGG GMPANRVALYNGILRDRLV RMAYSL
Sbjct: 61  KNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 111

[Close]

BLAST of Spg003518 vs. NCBI nr
Match: XP_022946910.1 (uncharacterized protein LOC111450851 isoform X1 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-28
Identity = 85/120 (70.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 11  MAMAFAALSGTV-IFLSFCLHKSHPSISSVGKKK------EMKKKIRKRVHFAEDLAI-S 70
           MAMA AALSG V + LSF   KS  S+SS GK+K      + KKK RKRVHFA+D A+ S
Sbjct: 1   MAMAMAALSGAVAVVLSFRHRKSAASVSS-GKQKPPIFLVKKKKKGRKRVHFADDSAVCS 60

Query: 71  NEELQRKKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYSL 123
            EELQRK GLILG S P GRAPP  LTSHGGGG GMPANRVALYNGILRDRLV RMAYSL
Sbjct: 61  TEELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 119

[Close]

BLAST of Spg003518 vs. ExPASy TrEMBL
Match: A0A1S3C5Q6 (uncharacterized protein LOC103497202 OS=Cucumis melo OX=3656 GN=LOC103497202 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.2e-33
Identity = 96/127 (75.59%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 2   SSSILSSQVMAMAFAALS-GTVI-FLSFCLHKSHPSISSVGKKKEM--KKKIRKRVHFAE 61
           SSSILSSQ MAMAFAALS GTVI  LS  LHKSHPSISSV +KKEM  KKK RKRVHF++
Sbjct: 3   SSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSVVEKKEMEKKKKGRKRVHFSD 62

Query: 62  DLAI--SNEELQRKKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLV 121
           DLAI  S EEL+RKK +ILGSS   GRA    LT +GGGGGGMPANR ALYNGILRDRLV
Sbjct: 63  DLAIFSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLV 122

Query: 122 QRMAYSL 123
            R+AYSL
Sbjct: 123 HRIAYSL 129

[Close]

BLAST of Spg003518 vs. ExPASy TrEMBL
Match: A0A0A0LIY8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006280 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.8e-32
Identity = 91/127 (71.65%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 1   MSSSILSSQVMAMAFAALSGTVI-FLSFCLHKSHPSISSVGKK--KEMKKKIRKRVHFAE 60
           MSSSILSSQ MAMAFA   GTVI  LSF LHKSHPSISSV KK  KE KKK RK+VHF++
Sbjct: 1   MSSSILSSQSMAMAFA---GTVIVVLSFYLHKSHPSISSVMKKKEKEKKKKGRKKVHFSD 60

Query: 61  DLAI--SNEELQRKKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLV 120
           DLAI  S ++L+RKK ++LGSS P+GRAP   LT+ GGGGGG+PANR ALYNGILR+RLV
Sbjct: 61  DLAIFSSTKDLKRKKDMMLGSSPPSGRAPARPLTTSGGGGGGLPANRAALYNGILRNRLV 120

Query: 121 QRMAYSL 123
            R+AYSL
Sbjct: 121 HRIAYSL 124

[Close]

BLAST of Spg003518 vs. ExPASy TrEMBL
Match: A0A6J1G4X1 (uncharacterized protein LOC111450851 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450851 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.4e-30
Identity = 85/114 (74.56%), Postives = 89/114 (78.07%), Query Frame = 0


Query: 11  MAMAFAALSGTV-IFLSFCLHKSHPSISSVGKKKEMKKKIRKRVHFAEDLAI-SNEELQR 70
           MAMA AALSG V + LSF   KS  S+SSV KK   KKK RKRVHFA+D A+ S EELQR
Sbjct: 1   MAMAMAALSGAVAVVLSFRHRKSAASVSSVVKK---KKKGRKRVHFADDSAVCSTEELQR 60

Query: 71  KKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYSL 123
           K GLILG S P GRAPP  LTSHGGGG GMPANRVALYNGILRDRLV RMAYSL
Sbjct: 61  KNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 111

[Close]

BLAST of Spg003518 vs. ExPASy TrEMBL
Match: A0A6J1G5C3 (uncharacterized protein LOC111450851 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450851 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.9e-29
Identity = 85/120 (70.83%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 11  MAMAFAALSGTV-IFLSFCLHKSHPSISSVGKKK------EMKKKIRKRVHFAEDLAI-S 70
           MAMA AALSG V + LSF   KS  S+SS GK+K      + KKK RKRVHFA+D A+ S
Sbjct: 1   MAMAMAALSGAVAVVLSFRHRKSAASVSS-GKQKPPIFLVKKKKKGRKRVHFADDSAVCS 60

Query: 71  NEELQRKKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMAYSL 123
            EELQRK GLILG S P GRAPP  LTSHGGGG GMPANRVALYNGILRDRLV RMAYSL
Sbjct: 61  TEELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 119

[Close]

BLAST of Spg003518 vs. ExPASy TrEMBL
Match: A0A5A7V7G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00290 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.2e-23
Identity = 78/123 (63.41%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 2   SSSILSSQVMAMAFAALS-GTVI-FLSFCLHKSHPSISSVGKKKEMKKKIRKRVHFAEDL 61
           SSSILSSQ MAMAFAALS GTVI  LS  LHKSHPSISS                    +
Sbjct: 3   SSSILSSQSMAMAFAALSAGTVIVVLSLYLHKSHPSISSA-------------------I 62

Query: 62  AISNEELQRKKGLILGSSSPAGRAPPSCLTSHGGGGGGMPANRVALYNGILRDRLVQRMA 121
             S EEL+RKK +ILGSS   GRA    LT +GGGGGGMPANR ALYNGILRDRLV R+A
Sbjct: 63  FSSTEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLVHRIA 106

Query: 122 YSL 123
           YSL
Sbjct: 123 YSL 106

[Close]

BLAST of Spg003518 vs. TAIR 10
Match: AT1G52565.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 9.1e-04
Identity = 35/83 (42.17%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 36  ISSVGKKKEMKKKIRKRVHFAEDL--AISNEELQRKKGLILGSSSPAGRAPPSCLTSHGG 95
           +SS  KKK+ K K +K+V FAE++     N E  RKK L           P   +     
Sbjct: 47  LSSEEKKKQRKNK-KKKVKFAENVKETKGNGEEYRKKSL-------RRIVPEQMIKPEKT 106

Query: 96  GG---GGMPANRVALYNGILRDR 114
           G      MPANR+ALYNGILRDR
Sbjct: 107 GSVCRNDMPANRIALYNGILRDR 121

The following BLAST results are available for this feature:

BLAST of Spg003518 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890799.1	8.2e-39	82.54	uncharacterized protein LOC120080255 [Benincasa hispida]	[more]
XP_008457539.1	8.8e-33	75.59	PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo]	[more]
KGN60682.1	5.7e-32	71.65	hypothetical protein Csa_019276 [Cucumis sativus]	[more]
XP_022946911.1	9.1e-30	74.56	uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata]	[more]
XP_022946910.1	1.0e-28	70.83	uncharacterized protein LOC111450851 isoform X1 [Cucurbita moschata]	[more]

BLAST of Spg003518 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg003518 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5Q6	4.2e-33	75.59	uncharacterized protein LOC103497202 OS=Cucumis melo OX=3656 GN=LOC103497202 PE=...	[more]
A0A0A0LIY8	2.8e-32	71.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006280 PE=4 SV=1	[more]
A0A6J1G4X1	4.4e-30	74.56	uncharacterized protein LOC111450851 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1G5C3	4.9e-29	70.83	uncharacterized protein LOC111450851 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7V7G5	5.2e-23	63.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg003518 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52565.1	9.1e-04	42.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..96
None	No IPR available	PANTHER	PTHR33564	TRANSMEMBRANE PROTEIN	coord: 3..121
None	No IPR available	PANTHER	PTHR33564:SF11	OS06G0604600 PROTEIN	coord: 3..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003518.1	Spg003518.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane