Spg003478 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg003478
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 47892459 .. 47892671 (+)
RNA-Seq ExpressionSpg003478
SyntenySpg003478
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATCGTTTCTAAGATTCTTGTTCATTGGTACGTGAAGCACTCATATGAAGGAGGTGCTGATAGTGCTAATGATATTATCGATACAGCTTGGATGAGCATCGAAGGAGATGATGATAGTATCGATGCAGATTATCACTATACTCTAATGCCATGTCTTGATGGTGATGATGATGAGGATCCAATTTACGATTATGCTCCAGCTGCATGA

mRNA sequence

ATGTCAATCGTTTCTAAGATTCTTGTTCATTGGTACGTGAAGCACTCATATGAAGGAGGTGCTGATAGTGCTAATGATATTATCGATACAGCTTGGATGAGCATCGAAGGAGATGATGATAGTATCGATGCAGATTATCACTATACTCTAATGCCATGTCTTGATGGTGATGATGATGAGGATCCAATTTACGATTATGCTCCAGCTGCATGA

Coding sequence (CDS)

ATGTCAATCGTTTCTAAGATTCTTGTTCATTGGTACGTGAAGCACTCATATGAAGGAGGTGCTGATAGTGCTAATGATATTATCGATACAGCTTGGATGAGCATCGAAGGAGATGATGATAGTATCGATGCAGATTATCACTATACTCTAATGCCATGTCTTGATGGTGATGATGATGAGGATCCAATTTACGATTATGCTCCAGCTGCATGA

Protein sequence

MSIVSKILVHWYVKHSYEGGADSANDIIDTAWMSIEGDDDSIDADYHYTLMPCLDGDDDEDPIYDYAPAA
Homology
BLAST of Spg003478 vs. NCBI nr
Match: MBA0744761.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 56.6 bits (135), Expect = 9.9e-05
Identity = 32/70 (45.71%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 1  MSIVSKILVHWYVKHSYEGGADSANDIIDTAWMSIEGDDDSIDADYHYTLMPCLDGDDDE 60
          MS +SK++  W  KH    G D  ND        +EGD D  D DY Y     L+GDDD+
Sbjct: 29 MSALSKVVASWCKKH--VDGDDDDNDFDYAPAACMEGDGDDDDGDYDYAPAASLEGDDDD 88

Query: 61 DPIYDYAPAA 71
          D  YDYAPAA
Sbjct: 89 DGSYDYAPAA 96

BLAST of Spg003478 vs. NCBI nr
Match: OMO57935.1 (hypothetical protein COLO4_34980 [Corchorus olitorius])

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 1  MSIVSKILV-HWYVKHSYEGGADSANDIIDTAWMS-IEGDDDSIDADYHYTLMPCLDGDD 60
          MS +SK+++  WY KH+   G D  +D  D A  + IEG+ D  D DY Y     L+GDD
Sbjct: 1  MSPISKVVITSWYKKHA--DGDDDGDDGYDFAPAACIEGNGDDDDGDYDYAPAASLEGDD 60

Query: 61 DEDPIYDYAPAA 71
          D+D  YDYAPAA
Sbjct: 61 DDDGTYDYAPAA 70

BLAST of Spg003478 vs. NCBI nr
Match: OMO80906.1 (hypothetical protein CCACVL1_12701 [Corchorus capsularis])

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 1  MSIVSKILV-HWYVKHSYEGGADSANDIIDTAWMS-IEGDDDSIDADYHYTLMPCLDGDD 60
          MS +SK+++  WY KH+   G D  +D  D A  + IEG+ D  D DY Y     L+GDD
Sbjct: 1  MSPISKVVITPWYKKHA--DGDDDGDDGYDFAPAACIEGNGDDDDGDYDYAPAASLEGDD 60

Query: 61 DEDPIYDYAPAA 71
          D+D  YDYAPAA
Sbjct: 61 DDDGTYDYAPAA 70

BLAST of Spg003478 vs. NCBI nr
Match: MBA0564450.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 1  MSIVSKILVHWYVKHSYEGGADSANDIIDTAWMSIEGDDDSIDADYHYTLMPCLDGDDDE 60
          MS +SK++  W  KH    G D  ND        +EGD D  D DY Y     L+GDDD+
Sbjct: 1  MSALSKVVASWCKKH--VDGDDDDNDFDYAPAACMEGDGDDDDGDYDYAPAASLEGDDDD 60

Query: 61 DPIYDYAPAA 71
          +  YDYAPAA
Sbjct: 61 NGSYDYAPAA 68

BLAST of Spg003478 vs. NCBI nr
Match: MBA0622208.1 (hypothetical protein [Gossypium davidsonii] >MBA0657694.1 hypothetical protein [Gossypium klotzschianum] >MBA0719259.1 hypothetical protein [Gossypium laxum] >MBA0866079.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 1  MSIVSKILVHWYVKHSYEGGADSANDIIDTAWMSIEGDDDSIDADYHYTLMPCLDGDDDE 60
          MS +SK++  W  KH    G D  ND        +EGD D  D DY Y     L+GDDD+
Sbjct: 29 MSALSKVVASWCKKH--VDGDDDDNDFDYAPAACMEGDGDDDDGDYDYAPAASLEGDDDD 88

Query: 61 DPIYDYAPAA 71
          +  YDYAPAA
Sbjct: 89 NGSYDYAPAA 96

BLAST of Spg003478 vs. ExPASy TrEMBL
Match: A0A7J9C8H7 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_007372 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 32/70 (45.71%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 1  MSIVSKILVHWYVKHSYEGGADSANDIIDTAWMSIEGDDDSIDADYHYTLMPCLDGDDDE 60
          MS +SK++  W  KH    G D  ND        +EGD D  D DY Y     L+GDDD+
Sbjct: 29 MSALSKVVASWCKKH--VDGDDDDNDFDYAPAACMEGDGDDDDGDYDYAPAASLEGDDDD 88

Query: 61 DPIYDYAPAA 71
          D  YDYAPAA
Sbjct: 89 DGSYDYAPAA 96

BLAST of Spg003478 vs. ExPASy TrEMBL
Match: A0A1R3GIL9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_34980 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.2e-05
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 1  MSIVSKILV-HWYVKHSYEGGADSANDIIDTAWMS-IEGDDDSIDADYHYTLMPCLDGDD 60
          MS +SK+++  WY KH+   G D  +D  D A  + IEG+ D  D DY Y     L+GDD
Sbjct: 1  MSPISKVVITSWYKKHA--DGDDDGDDGYDFAPAACIEGNGDDDDGDYDYAPAASLEGDD 60

Query: 61 DEDPIYDYAPAA 71
          D+D  YDYAPAA
Sbjct: 61 DDDGTYDYAPAA 70

BLAST of Spg003478 vs. ExPASy TrEMBL
Match: A0A1R3IE84 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12701 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 1  MSIVSKILV-HWYVKHSYEGGADSANDIIDTAWMS-IEGDDDSIDADYHYTLMPCLDGDD 60
          MS +SK+++  WY KH+   G D  +D  D A  + IEG+ D  D DY Y     L+GDD
Sbjct: 1  MSPISKVVITPWYKKHA--DGDDDGDDGYDFAPAACIEGNGDDDDGDYDYAPAASLEGDD 60

Query: 61 DEDPIYDYAPAA 71
          D+D  YDYAPAA
Sbjct: 61 DDDGTYDYAPAA 70

BLAST of Spg003478 vs. ExPASy TrEMBL
Match: A0A7J9M6P0 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_017687 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 1  MSIVSKILVHWYVKHSYEGGADSANDIIDTAWMSIEGDDDSIDADYHYTLMPCLDGDDDE 60
          MS +SK++  W  KH    G D  ND        +EGD D  D DY Y     L+GDDD+
Sbjct: 29 MSALSKVVASWCKKH--VDGDDDDNDFDYAPAACMEGDGDDDDGDYDYAPAASLEGDDDD 88

Query: 61 DPIYDYAPAA 71
          +  YDYAPAA
Sbjct: 89 NGSYDYAPAA 96

BLAST of Spg003478 vs. ExPASy TrEMBL
Match: A0A7J9EM62 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_009205 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 1  MSIVSKILVHWYVKHSYEGGADSANDIIDTAWMSIEGDDDSIDADYHYTLMPCLDGDDDE 60
          MS +SK++  W  KH    G D  ND        +EGD D  D DY Y     L+GDDD+
Sbjct: 25 MSALSKVVASWCKKH--VDGDDDDNDFDYAPAACMEGDGDDDDGDYDYAPAASLEGDDDD 84

Query: 61 DPIYDYAPAA 71
          +  YDYAPAA
Sbjct: 85 NGSYDYAPAA 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MBA0744761.19.9e-0545.71hypothetical protein [Gossypium gossypioides][more]
OMO57935.11.7e-0447.22hypothetical protein COLO4_34980 [Corchorus olitorius][more]
OMO80906.12.2e-0447.22hypothetical protein CCACVL1_12701 [Corchorus capsularis][more]
MBA0564450.13.8e-0444.29hypothetical protein [Gossypium lobatum][more]
MBA0622208.13.8e-0444.29hypothetical protein [Gossypium davidsonii] >MBA0657694.1 hypothetical protein [... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J9C8H74.8e-0545.71Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_007372 PE=4 ... [more]
A0A1R3GIL98.2e-0547.22Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_34980 PE=4 SV=1[more]
A0A1R3IE841.1e-0447.22Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12701 PE=4 ... [more]
A0A7J9M6P01.8e-0444.29Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_017687 PE=4... [more]
A0A7J9EM621.8e-0444.29Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_009205 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg003478.1Spg003478.1mRNA