Spg003333 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg003333
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonucloprotein
Location	scaffold4: 47732336 .. 47735098 (-)
RNA-Seq Expression	Spg003333
Synteny	Spg003333

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAATTTTGGACTACACTGATGCACCAGGAACTGACAAGGACAATCGGATAGAGGTAGGACCAGAAAGCTGCCCAGAGGAAGACCGGACCAAAGGGTCGAGCCAATTTGGCCCGACCCATTGGCCGAGGCCGAGCTTAATCACCTCCCTTCGGTCCCTGATGCCCTGGACCGCCCCGGTTTCGCCTGGTTCGTCCCGAAACACCTCCGAATTCCTAAAAACCCTAGGAGGATGAGCAGATATTTAAACCCATTTTCACCACTGAAGAATGCTTTCTAGTCTCTCCTCGGTTTTCTGACTTAAGCATCGGAGGCTGTGTGACCTACACCACACCGGTGTACAACAGTTTTTGCCGGTTTTGGCGGTCACGTCTTCCCCAGCTTCTACAAATTCACTGTTGGTGTCACGTGAAGGTCAGGTGAGTCCTCTGTCCATATTTTGACATCAACATACATTTTCTTCTCAAAGTTAATATTGCCATTTTATTCCACATTAAATTTTAATGATATTATTAAATACTTAGTTGACTTTTTTATACACCAATGACTATAATTTTGAAATTTTCAAAACATTTAAGAAGAGATAGAATATTAGTATAAATTTCAAACCCAAATGAAAAGTCCTAAAACTAAAATTTAATTAAAACCTAAATTAATAAAAAAATTGAGAATACATGGGAAATTATAATTGATGGGCCGTGGGTCCAAGAGTACAAAAATATGTTCCAAGCCCATGAGTTGGGCCGGGCCAGCTTTTGTTAAAGAGAATTGGGCCTGGGCCCAATGTAGAAGTCAACTTCCAAGGGACTCGGCCCGATGACCTTGATTCTTCTCTCTTTCTTCCATACATATATCATCGAGAATTTACCAGTAGCTCTTAAACCCTAATTTTTTTCTTTCAAAGTTTTCTCACTGTATTAAAACCCTACCTTTCTTCTTCGATCTAAAATGGTACTGTATCTTTCTTACGCGTGCGTGTTTGAGATTGATTCTTTTGAAGAACTTTTTGTTGATTTTATTTTCATTCGTTTGCATGGATTTTAATGGCTGTTCCGTTTTTGCAGACAGGAGAAGCGGTGAATCCCAAAGCCTATCCTTTGGCCGATGCCCAGCTTACAATTACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAAGGGTGCGAATGAAGGTACCGTGCTCTGTTTTGTGTTGGTGTATTTTCATTTGAAGAAAGTTTTAGCTTTATGAGAAGGGTTGGATGAGGATTTTGTTTGGTGTTATTTGTTTCCCTTGGCTAAAAGTTTTCTTTCGATGGAGTTTCAGCCACTAAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTTCCCTTGTTGGCGGAAGATAAGGTAAAACGGTTACCTTCTTGAACATCCGATTGGAAACCATGCTTTTCTGTTGTTACTTGTTTAGGCTAATAAGAGTTTGGCATGTGAGAGAATGAACATGTTGACGGATTCCCATATCTCCCCTTCCTTTTACTGTACTATTTTTTAACTAATGAGACCTCGGTGTTTTCTGCTTAGAAAAATGTTAGGATTTAGCTTTTCTATAGACGTGATAGTTAGCAGCACTTTCTCCTTTTTGTTTCTTCCTTATGGACACTCTCAAAGTGTAAGCCGCCGATGCATTGTTCTCTGCAGCCTTAGTTACCATTTTAAGCTTTAAATGTATTCCATATTTATGTGCCATGAAAACCTGATATGGTTTATAAGGAATAAATGTAATGAGGCTGTAGAAGAGCTTCCAAGCTCTTTCTTTTAGAATATAGAGGATTGAATAGAAGTGGATAACTTCTATGTGGTTAACTTTAAGGCACCGTTCTCTAGATTAGAATTCTTCAGTTTGCTTTATTCTTGGTTATACCATTCTTCATATGCTTGAATCTACGATGCAGAAAATGAAAATTATCCTTTAAACCTGTGACGGAGTCTCGGTTGGGATAGAACTAGACCATCCTGCTGATGGTCATCAATTATTTATTTGGAACGATCTTGAGGAAACATATGCAGATCATACATACATTCCTTATAAGAACTGATTATTAGGATAATTCCTTTTCCAGACTTCCAGTATATTAAAATCATGGGTCTATTAAAATAATCAGTGCTGAATGCTCAGTTTTATGATGGTTTTATTTTCAAATATGCAGAATGTTCCCTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGTGGAGTCACGAGACCTGTAATTGCATGTTCTGTAACGACAAACGAGGGAAGCCAATTGAAATCTCAGATACAGCAATTGAAGGTAACTACCACCACCTCTTTCTTTAGGTGTATTTTCTTTGTAAAATATGTGTCGCCTCTTGATACAGTGTCTTTTTTTCTGCAGGATGCCATTGAGAAGCTGTTGATCTGAAATGTTATTCTATATGGCATTCGGTATGATGGGCTTCTTTGATCGTCATGGTCACTGCTCTGGAGGCTTTGACTGAAGTTGTTGTGCAATTAGGGAAAAATGTCTTGGTATTAACCTATATATTGAGCTTCTTTTTTATATTTTGTTTCCATTAAGAGTGGGACAAAACACTCGTACAATTTTAATGACAGTTTATTAAGCTAATGTTACCCACCTTTATCCTTGTGAGTTTACTGTTGAAGATGTTCATGGTTCATGAAGCATGGCTCGTTCATCAATATCTCTTTGCTTTTTTG

mRNA sequence

GTAATTTTGGACTACACTGATGCACCAGGAACTGACAAGGACAATCGGATAGAGACAGGAGAAGCGGTGAATCCCAAAGCCTATCCTTTGGCCGATGCCCAGCTTACAATTACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAAGGGTGCGAATGAAGCCACTAAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTTCCCTTGTTGGCGGAAGATAAGAATGTTCCCTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGTGGAGTCACGAGACCTGTAATTGCATGTTCTGTAACGACAAACGAGGGAAGCCAATTGAAATCTCAGATACAGCAATTGAAGGATGCCATTGAGAAGCTGTTGATCTGA

Coding sequence (CDS)

GTAATTTTGGACTACACTGATGCACCAGGAACTGACAAGGACAATCGGATAGAGACAGGAGAAGCGGTGAATCCCAAAGCCTATCCTTTGGCCGATGCCCAGCTTACAATTACTATTCTTGATCTTGTTCAGCAAGCTGCTAACTACAAGCAGCTAAAGAAGGGTGCGAATGAAGCCACTAAGACGCTGAATAGAGGGATTTCGGAGTTTGTAGTGATGGCTGCGGACACTGAGCCGCTTGAGATTCTTCTCCATCTTCCCTTGTTGGCGGAAGATAAGAATGTTCCCTATGTATTTGTCCCTTCAAAGCAAGCTCTTGGCCGAGCATGTGGAGTCACGAGACCTGTAATTGCATGTTCTGTAACGACAAACGAGGGAAGCCAATTGAAATCTCAGATACAGCAATTGAAGGATGCCATTGAGAAGCTGTTGATCTGA

Protein sequence

VILDYTDAPGTDKDNRIETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Homology

[Close]

BLAST of Spg003333 vs. NCBI nr
Match: XP_020204806.1 (NHP2-like protein 1 isoform X1 [Cajanus cajan])

HSP 1 Score: 247.7 bits (631), Expect = 6.3e-62
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 17  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD 76
           ++TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD
Sbjct: 1   MQTGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD 60

Query: 77  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 136
           TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL
Sbjct: 61  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 120

Query: 137 KDAIEKLLI 146
           KDAIEKLLI
Sbjct: 121 KDAIEKLLI 129

[Close]

BLAST of Spg003333 vs. NCBI nr
Match: XP_021819546.1 (NHP2-like protein 1 [Prunus avium])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 128/142 (90.14%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 4   DYTDAPGTDKDNRIETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTL 63
           D +  P   KD  +ETGEAVN KAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTL
Sbjct: 61  DSSVIPTNKKDASVETGEAVNAKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTL 120

Query: 64  NRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTT 123
           NRGISEFVVMA DTEP+EILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+
Sbjct: 121 NRGISEFVVMACDTEPIEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTS 180

Query: 124 NEGSQLKSQIQQLKDAIEKLLI 146
           NEGSQLKSQIQQLKDAIEKLLI
Sbjct: 181 NEGSQLKSQIQQLKDAIEKLLI 202

[Close]

BLAST of Spg003333 vs. NCBI nr
Match: BAT80699.1 (hypothetical protein VIGAN_03029700 [Vigna angularis var. angularis])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 17  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD 76
           ++TGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD
Sbjct: 36  LQTGEVVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD 95

Query: 77  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 136
           TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL
Sbjct: 96  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 155

Query: 137 KDAIEKLLI 146
           KDAIEKLLI
Sbjct: 156 KDAIEKLLI 164

[Close]

BLAST of Spg003333 vs. NCBI nr
Match: XP_027332261.1 (NHP2-like protein 1 isoform X1 [Abrus precatorius])

HSP 1 Score: 246.5 bits (628), Expect = 1.4e-61
Identity = 125/129 (96.90%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 17  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD 76
           ++TGEAVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEF+VMAAD
Sbjct: 1   MQTGEAVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAAD 60

Query: 77  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 136
           TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL
Sbjct: 61  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 120

Query: 137 KDAIEKLLI 146
           KDAIEKLLI
Sbjct: 121 KDAIEKLLI 129

[Close]

BLAST of Spg003333 vs. NCBI nr
Match: KAG4930169.1 (hypothetical protein JHK86_047130 [Glycine max] >KAG4932930.1 hypothetical protein JHK87_046932 [Glycine soja] >KAG4943058.1 hypothetical protein JHK85_047704 [Glycine max] >KAG5097382.1 hypothetical protein JHK82_047236 [Glycine max] >KAG5102172.1 hypothetical protein JHK84_047141 [Glycine max])

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 126/129 (97.67%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 17  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD 76
           ++TGEAVNPKAYPLADAQL+ITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD
Sbjct: 1   MQTGEAVNPKAYPLADAQLSITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD 60

Query: 77  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 136
           TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL
Sbjct: 61  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 120

Query: 137 KDAIEKLLI 146
           KDAIEKLLI
Sbjct: 121 KDAIEKLLI 129

[Close]

BLAST of Spg003333 vs. ExPASy Swiss-Prot
Match: Q5XH16 (NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 104/127 (81.89%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 78
           T   VNPKAYPLADAQLT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EF+VMAAD E
Sbjct: 2   TEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAE 61

Query: 79  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 138
           PLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++ 
Sbjct: 62  PLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQQ 121

Query: 139 AIEKLLI 146
           AIE+LL+
Sbjct: 122 AIERLLV 128

[Close]

BLAST of Spg003333 vs. ExPASy Swiss-Prot
Match: Q6P8E9 (NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 104/127 (81.89%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 78
           T   VNPKAYPLADAQLT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EF+VMAAD E
Sbjct: 2   TEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAE 61

Query: 79  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 138
           PLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  EGSQLK QIQ L+ 
Sbjct: 62  PLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQQ 121

Query: 139 AIEKLLI 146
           +IE+LL+
Sbjct: 122 SIERLLV 128

[Close]

BLAST of Spg003333 vs. ExPASy Swiss-Prot
Match: Q3B8S0 (NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3)

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-51
Identity = 100/123 (81.30%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 23  VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEI 82
           VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD EPLEI
Sbjct: 6   VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEI 65

Query: 83  LLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEK 142
           +LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++ +IE+
Sbjct: 66  ILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIER 125

Query: 143 LLI 146
           LL+
Sbjct: 126 LLV 128

[Close]

BLAST of Spg003333 vs. ExPASy Swiss-Prot
Match: P55769 (NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3)

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-51
Identity = 100/123 (81.30%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 23  VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEI 82
           VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD EPLEI
Sbjct: 6   VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEI 65

Query: 83  LLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEK 142
           +LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++ +IE+
Sbjct: 66  ILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIER 125

Query: 143 LLI 146
           LL+
Sbjct: 126 LLV 128

[Close]

BLAST of Spg003333 vs. ExPASy Swiss-Prot
Match: Q4R5C6 (NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-51
Identity = 100/123 (81.30%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 23  VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEI 82
           VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD EPLEI
Sbjct: 6   VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEI 65

Query: 83  LLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEK 142
           +LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++ +IE+
Sbjct: 66  ILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIER 125

Query: 143 LLI 146
           LL+
Sbjct: 126 LLV 128

[Close]

BLAST of Spg003333 vs. ExPASy TrEMBL
Match: A0A6P5T0D6 (Ribonucloprotein OS=Prunus avium OX=42229 GN=LOC110761390 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.2e-62
Identity = 128/142 (90.14%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 4   DYTDAPGTDKDNRIETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTL 63
           D +  P   KD  +ETGEAVN KAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTL
Sbjct: 61  DSSVIPTNKKDASVETGEAVNAKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTL 120

Query: 64  NRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTT 123
           NRGISEFVVMA DTEP+EILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+
Sbjct: 121 NRGISEFVVMACDTEPIEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTS 180

Query: 124 NEGSQLKSQIQQLKDAIEKLLI 146
           NEGSQLKSQIQQLKDAIEKLLI
Sbjct: 181 NEGSQLKSQIQQLKDAIEKLLI 202

[Close]

BLAST of Spg003333 vs. ExPASy TrEMBL
Match: A0A0S3RJ84 (Ribonucloprotein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G029700 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.8e-62
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 17  IETGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD 76
           ++TGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD
Sbjct: 36  LQTGEVVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAAD 95

Query: 77  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 136
           TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL
Sbjct: 96  TEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQL 155

Query: 137 KDAIEKLLI 146
           KDAIEKLLI
Sbjct: 156 KDAIEKLLI 164

[Close]

BLAST of Spg003333 vs. ExPASy TrEMBL
Match: A0A6J1HQD3 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111465723 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.8e-62
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 78
           TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE
Sbjct: 2   TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 61

Query: 79  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 138
           PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD
Sbjct: 62  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 121

Query: 139 AIEKLLI 146
           AIEKLLI
Sbjct: 122 AIEKLLI 128

[Close]

BLAST of Spg003333 vs. ExPASy TrEMBL
Match: A0A444WXD4 (Ribonucloprotein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000462 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.8e-62
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 78
           TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE
Sbjct: 2   TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 61

Query: 79  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 138
           PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD
Sbjct: 62  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 121

Query: 139 AIEKLLI 146
           AIEKLLI
Sbjct: 122 AIEKLLI 128

[Close]

BLAST of Spg003333 vs. ExPASy TrEMBL
Match: A0A5A7V206 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001630 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.8e-62
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 78
           TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE
Sbjct: 36  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 95

Query: 79  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 138
           PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD
Sbjct: 96  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 155

Query: 139 AIEKLLI 146
           AIEKLLI
Sbjct: 156 AIEKLLI 162

[Close]

BLAST of Spg003333 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 232.6 bits (592), Expect = 1.9e-61
Identity = 119/127 (93.70%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 78
           TGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD E
Sbjct: 2   TGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAE 61

Query: 79  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 138
           PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LKD
Sbjct: 62  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKD 121

Query: 139 AIEKLLI 146
           AIEKLLI
Sbjct: 122 AIEKLLI 128

[Close]

BLAST of Spg003333 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 231.9 bits (590), Expect = 3.3e-61
Identity = 118/127 (92.91%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 78
           TGE VNPKAYPLAD+QL+ITI+DLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD E
Sbjct: 2   TGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAE 61

Query: 79  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 138
           PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LKD
Sbjct: 62  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKD 121

Query: 139 AIEKLLI 146
           AIEKLLI
Sbjct: 122 AIEKLLI 128

[Close]

BLAST of Spg003333 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 228.0 bits (580), Expect = 4.8e-60
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 78
           T E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADTE
Sbjct: 2   TVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTE 61

Query: 79  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKD 138
           PLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKD
Sbjct: 62  PLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKD 121

Query: 139 AIEKLLI 146
           AIEKLLI
Sbjct: 122 AIEKLLI 128

[Close]

BLAST of Spg003333 vs. TAIR 10
Match: AT5G20160.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-56
Identity = 119/159 (74.84%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE-------------------- 78
           TGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANE                    
Sbjct: 2   TGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMFV 61

Query: 79  ------------ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQAL 138
                       ATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQAL
Sbjct: 62  KLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQAL 121

Query: 139 GRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 146
           GRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 122 GRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 160

[Close]

BLAST of Spg003333 vs. TAIR 10
Match: AT4G12600.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-52
Identity = 117/182 (64.29%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 19  TGEAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTE 78
           T E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADTE
Sbjct: 2   TVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTE 61

Query: 79  PLEILLHLPLLAEDK--------------------------------------------- 138
           PLEILLHLPLLAEDK                                             
Sbjct: 62  PLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWLL 121

Query: 139 ----------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKL 146
                     NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKDAIEKL
Sbjct: 122 DSSFEIVIVDNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEKL 181

The following BLAST results are available for this feature:

BLAST of Spg003333 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020204806.1	6.3e-62	98.45	NHP2-like protein 1 isoform X1 [Cajanus cajan]	[more]
XP_021819546.1	1.1e-61	90.14	NHP2-like protein 1 [Prunus avium]	[more]
BAT80699.1	1.4e-61	97.67	hypothetical protein VIGAN_03029700 [Vigna angularis var. angularis]	[more]
XP_027332261.1	1.4e-61	96.90	NHP2-like protein 1 isoform X1 [Abrus precatorius]	[more]
KAG4930169.1	1.8e-61	97.67	hypothetical protein JHK86_047130 [Glycine max] >KAG4932930.1 hypothetical prote...	[more]

BLAST of Spg003333 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XH16	1.2e-52	81.89	NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1	[more]
Q6P8E9	1.2e-52	81.89	NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1	[more]
Q3B8S0	5.2e-51	81.30	NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3	[more]
P55769	5.2e-51	81.30	NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3	[more]
Q4R5C6	5.2e-51	81.30	NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1	[more]

BLAST of Spg003333 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5T0D6	5.2e-62	90.14	Ribonucloprotein OS=Prunus avium OX=42229 GN=LOC110761390 PE=3 SV=1	[more]
A0A0S3RJ84	6.8e-62	97.67	Ribonucloprotein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G029700 ...	[more]
A0A6J1HQD3	8.8e-62	100.00	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111465723 PE=3 SV=1	[more]
A0A444WXD4	8.8e-62	100.00	Ribonucloprotein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000462 PE=3 SV=1	[more]
A0A5A7V206	8.8e-62	100.00	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G0016...	[more]

BLAST of Spg003333 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20160.1	1.9e-61	93.70	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	3.3e-61	92.91	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	4.8e-60	92.13	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.2	1.9e-56	74.84	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.2	2.2e-52	64.29	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 52..66 score: 47.88 coord: 87..97 score: 59.09 coord: 71..84 score: 48.7 coord: 97..111 score: 51.21
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 99..111 score: 83.08 coord: 38..53 score: 65.0 coord: 55..65 score: 87.27 coord: 25..38 score: 62.86
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 40..128 e-value: 1.6E-26 score: 91.8
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 17..145 e-value: 7.4E-58 score: 195.8
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 23..143
None	No IPR available	PANTHER	PTHR23105:SF158	NHP2-LIKE PROTEIN 1	coord: 17..145
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 17..145
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 90..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg003333.1	Spg003333.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031428	box C/D RNP complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding