Spg002576 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg002576
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTubby-like F-box protein
Locationscaffold6: 5090366 .. 5092183 (-)
RNA-Seq ExpressionSpg002576
SyntenySpg002576
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATATTTTGGTGGGAATTTCCAAGTCATAAATAAAATTTGCTTTACCAATTAGTATACGTAGAATTCAGAAACGAACCAAAAGAAGATCTGATCTCGAACAGGGGGCGGCGATGGAGAAATCTGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCCGCCGACTGCATCGACGGCTGTTTCACCGCCTGTGTTCAGAAAGATAGTGAGTATTTCTTTTTCCGATTTCCGTTTTCTGAATTTCTTCGTAGCTCAAATTGAGCCTTTTTTTTTTCAGCTGTTTATGCATCTGTGATTCTGAAAATCTGAGTGATAATTGTTTTTTTTTTTTTTTTTTTTTTTTTTGTCATTACTGAAATTAGATTTCAAACTACTTTTGAAAAATATTGCTTTTTTTTTTTTTTTTGAGAAATTGAAAAATATTGCTCTTAACTTTGTATCAGTGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAACTGTGTGGTACTGAAAAATCTCTAACTTACAAAAAAAAAAAATCTCTAACTTATTTAACATCGATTAGATGAAAAATAGAAAATTTTCAATTTAGTTACTTATTAGACACAAAATTAAAAGTTGAATCTACTAAACAATTTTTAAAGTTGAAAATCCAACTCTAACCCCATAATTTATTATAGGAAGATGAAAATATTAAAACAAATTAAATTAAAAATTCTACACATTAAAATATGACCTAACATTAATTAACAATAATAAGTAACAAAAAGCTGGTTACGGTGCAGCGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAATGCGGTCCAGGTATTATTGGAATTAACTTTTATAATTTAATTATCAATTTAATCATTTATTCTTTAACAATGTCTTTCTTTTTTCCTCTTCATTTTTCCTTATCTCAATTTAATTATTGATGTGATGTGGATGCTAGATCTTAGTTGAAAAATGATGATAATGATATAATATTAATACCATGTGCAAATTTCATTTTCATTTTTGAGGAAATCTTTGATTGAAATCAAAGATTGTATGTTTTATTTCATTCATGATTTTGATATATTCATTTTTATTTTAGAAAAAAAAGAAAAAAAAAAGAGAGAGATTTCATCTACTTGTATTGAATAAAAGTCATCCAAAAAATGACATCTTAATGTAGGTACGATCATAGGTAGGTACTAATGATTTCCACAATAATCTTGAAAATATAAAAGCAATATATTTTTCAGTAGCGTCTAGTGTGTGGTTGATTTATGGTGAAGTTTGTCTCCCTCCCTGCCCTTGTTGAATAGACAATTTTTATAAAAATAGGATAAATAAAAGTTACACATTAACAGAGATTTATACTTATAAACTTCATTGTTTATAACGACTTAGCTTTGATGATTATAGAAATAATATAAATGAGGTAAAAATGTGATTGCAGATAGTGAAGTTGAAGATATTACTCGTTGAGAATAAATTGGTAGGCAAAATAACAGAGGGCATCGATGTTGTGGGAAATCAAATCATATCTCAGGAAGAATACTTCAGGTCTAGCTAAACCAATGTTTTTCTTTTCTTAATAATCATTTTAATGTTTGTGAATGTCATCTTTGTGTGGTATATGTATTAGTTGAGTTTCTTTACCTTTAAATTGGAGATACCTATTATCATAGTAAATTTGGTCTCATTTGTTTTGTTTCAAGTTAAGAATGTAATGATGTTACTTCTTATGGTAGCATAATTTTCGTTATGACGTTCAAAGATCAAATTTAGATATTCAAACAAACGATTATG

mRNA sequence

ATGGAGAAATCTGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCCGCCGACTGCATCGACGGCTGTTTCACCGCCTGTGTTCAGAAAGATACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAATGCGGTCCAGATAGTGAAGTTGAAGATATTACTCGTTGA

Coding sequence (CDS)

ATGGAGAAATCTGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCCGCCGACTGCATCGACGGCTGTTTCACCGCCTGTGTTCAGAAAGATACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAATGCGGTCCAGATAGTGAAGTTGAAGATATTACTCGTTGA

Protein sequence

MEKSAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDSEVEDITR
Homology
BLAST of Spg002576 vs. NCBI nr
Match: KAG6600340.1 (hypothetical protein SDJN03_05573, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030996.1 hypothetical protein SDJN02_05035, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MEKSAA----AILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          M+KS A    AILCF+LLSAAA TVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG
Sbjct: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60

Query: 61 PDSEVE 63
          PD++ E
Sbjct: 61 PDTKFE 66

BLAST of Spg002576 vs. NCBI nr
Match: XP_008456107.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 1  MEKS---AAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MEKS   AAAILC LLLSA A VTVSADAADCID CFTACVQKDTR+MQRCEGKCRIKCG
Sbjct: 1  MEKSAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCG 60

Query: 61 PDSEVED 64
          PD++V++
Sbjct: 61 PDNKVDE 67

BLAST of Spg002576 vs. NCBI nr
Match: XP_016901882.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 5.3e-16
Identity = 54/76 (71.05%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 1  MEKS---AAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKD---------TRLMQRC 60
          MEKS   AAAILC LLLSA A VTVSADAADCID CFTACVQKD          R+MQRC
Sbjct: 1  MEKSAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDNGWVGCCGAARVMQRC 60

Query: 61 EGKCRIKCGPDSEVED 64
          EGKCRIKCGPD++V++
Sbjct: 61 EGKCRIKCGPDNKVDE 76

BLAST of Spg002576 vs. NCBI nr
Match: KAE8650509.1 (hypothetical protein Csa_010751 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 6.9e-16
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 1  MEKSAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGP 58
          ME+SA AILC LLLS A VTVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGP
Sbjct: 1  MERSAVAILCLLLLS-AVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP 56

BLAST of Spg002576 vs. NCBI nr
Match: KAG5016052.1 (hypothetical protein JHK85_022188 [Glycine max] >KAG5025833.1 hypothetical protein JHK86_021747 [Glycine max] >KAG5136996.1 hypothetical protein JHK82_021727 [Glycine max] >RZB97534.1 hypothetical protein D0Y65_020922 [Glycine soja])

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1  MEKSAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDSE 60
          M+K  AA++ FLL+S    +V  DAADC+DGC TACVQ D+RL  RCE KC I+CGPDS 
Sbjct: 1  MKKMVAAMMLFLLISTQMKSVEPDAADCLDGCSTACVQSDSRLQARCERKCSIRCGPDST 60

Query: 61 VED 64
          +++
Sbjct: 61 IKE 63

BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A1S3C2J8 (uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 1  MEKS---AAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MEKS   AAAILC LLLSA A VTVSADAADCID CFTACVQKDTR+MQRCEGKCRIKCG
Sbjct: 1  MEKSAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCG 60

Query: 61 PDSEVED 64
          PD++V++
Sbjct: 61 PDNKVDE 67

BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A0A0LC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.4e-19
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1  MEKSAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDSE 60
          ME+SA AILC LLLS A VTVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPD++
Sbjct: 1  MERSAVAILCLLLLS-AVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNK 60

Query: 61 VEDIT 66
          VE+ T
Sbjct: 61 VEENT 64

BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A1S4E0W4 (uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 54/76 (71.05%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 1  MEKS---AAAILCFLLLSA-AAVTVSADAADCIDGCFTACVQKD---------TRLMQRC 60
          MEKS   AAAILC LLLSA A VTVSADAADCID CFTACVQKD          R+MQRC
Sbjct: 1  MEKSAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDNGWVGCCGAARVMQRC 60

Query: 61 EGKCRIKCGPDSEVED 64
          EGKCRIKCGPD++V++
Sbjct: 61 EGKCRIKCGPDNKVDE 76

BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A445JGK3 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_020922 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1  MEKSAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDSE 60
          M+K  AA++ FLL+S    +V  DAADC+DGC TACVQ D+RL  RCE KC I+CGPDS 
Sbjct: 1  MKKMVAAMMLFLLISTQMKSVEPDAADCLDGCSTACVQSDSRLQARCERKCSIRCGPDST 60

Query: 61 VED 64
          +++
Sbjct: 61 IKE 63

BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A6A4NXS4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00041291 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 0

Query: 1  MEKSAAAILCFLLLSAAAV-TVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDS 60
          M+K   AI+  L +  + + TV++DA+DC+D C TACVQ+DTRLMQRC+ KC+IKCGPDS
Sbjct: 5  MKKIGVAIIMLLFVICSQMETVNSDASDCLDACSTACVQRDTRLMQRCDRKCQIKCGPDS 64

Query: 61 EVED 64
          +VE+
Sbjct: 65 KVEE 68

BLAST of Spg002576 vs. TAIR 10
Match: AT1G25275.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 1  MEKSAAAILCFLLLSA--AAVTVSADA----ADCIDGCFTACVQKDTRLMQRCEGKCRIK 60
          M+K    +   L++ A  +++ + A+A     DC DGC TACVQ+D R   RC+ KC I+
Sbjct: 2  MKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIR 61

BLAST of Spg002576 vs. TAIR 10
Match: AT1G25275.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 4.8e-07
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 1  MEKSAAAILCFLLLSA--AAVTVSADA----ADCIDGCFTACVQKDTRLMQRCEGKCRIK 60
          M+K    +   L++ A  +++ + A+A     DC DGC TACVQ+D R   RC+ KC I+
Sbjct: 2  MKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIR 61

Query: 61 CGPDSEVE 63
          CGP    E
Sbjct: 62 CGPGKHYE 69

BLAST of Spg002576 vs. TAIR 10
Match: AT1G25275.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 6.2e-07
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 1  MEKSAAAILCFLLLSA--AAVTVSADA----ADCIDGCFTACVQKDTRLMQRCEGKCRIK 60
          M+K    +   L++ A  +++ + A+A     DC DGC TACVQ+D     RC+ KC I+
Sbjct: 2  MKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDREKTSRCDRKCSIR 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6600340.12.7e-2083.33hypothetical protein SDJN03_05573, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008456107.16.7e-1982.09PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo][more]
XP_016901882.15.3e-1671.05PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo][more]
KAE8650509.16.9e-1684.21hypothetical protein Csa_010751 [Cucumis sativus][more]
KAG5016052.13.0e-1157.14hypothetical protein JHK85_022188 [Glycine max] >KAG5025833.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C2J83.2e-1982.09uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0LC009.4e-1980.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1[more]
A0A1S4E0W42.6e-1671.05uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A445JGK31.4e-1157.14Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_020922 PE=4 SV=1[more]
A0A6A4NXS42.5e-1157.81Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00041291 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G25275.11.6e-0741.54unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT1G25275.34.8e-0739.71unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT1G25275.26.2e-0740.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37183:SF1PLANT THIONIN FAMILY PROTEINcoord: 1..64
NoneNo IPR availablePANTHERPTHR37183PLANT THIONIN FAMILY PROTEINcoord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg002576.1Spg002576.1mRNA