Spg002576 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATATTTTGGTGGGAATTTCCAAGTCATAAATAAAATTTGCTTTACCAATTAGTATACGTAGAATTCAGAAACGAACCAAAAGAAGATCTGATCTCGAACAGGGGGCGGCGATGGAGAAATCTGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCCGCCGACTGCATCGACGGCTGTTTCACCGCCTGTGTTCAGAAAGATAGTGAGTATTTCTTTTTCCGATTTCCGTTTTCTGAATTTCTTCGTAGCTCAAATTGAGCCTTTTTTTTTTCAGCTGTTTATGCATCTGTGATTCTGAAAATCTGAGTGATAATTGTTTTTTTTTTTTTTTTTTTTTTTTTTGTCATTACTGAAATTAGATTTCAAACTACTTTTGAAAAATATTGCTTTTTTTTTTTTTTTTGAGAAATTGAAAAATATTGCTCTTAACTTTGTATCAGTGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAACTGTGTGGTACTGAAAAATCTCTAACTTACAAAAAAAAAAAATCTCTAACTTATTTAACATCGATTAGATGAAAAATAGAAAATTTTCAATTTAGTTACTTATTAGACACAAAATTAAAAGTTGAATCTACTAAACAATTTTTAAAGTTGAAAATCCAACTCTAACCCCATAATTTATTATAGGAAGATGAAAATATTAAAACAAATTAAATTAAAAATTCTACACATTAAAATATGACCTAACATTAATTAACAATAATAAGTAACAAAAAGCTGGTTACGGTGCAGCGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAATGCGGTCCAGGTATTATTGGAATTAACTTTTATAATTTAATTATCAATTTAATCATTTATTCTTTAACAATGTCTTTCTTTTTTCCTCTTCATTTTTCCTTATCTCAATTTAATTATTGATGTGATGTGGATGCTAGATCTTAGTTGAAAAATGATGATAATGATATAATATTAATACCATGTGCAAATTTCATTTTCATTTTTGAGGAAATCTTTGATTGAAATCAAAGATTGTATGTTTTATTTCATTCATGATTTTGATATATTCATTTTTATTTTAGAAAAAAAAGAAAAAAAAAAGAGAGAGATTTCATCTACTTGTATTGAATAAAAGTCATCCAAAAAATGACATCTTAATGTAGGTACGATCATAGGTAGGTACTAATGATTTCCACAATAATCTTGAAAATATAAAAGCAATATATTTTTCAGTAGCGTCTAGTGTGTGGTTGATTTATGGTGAAGTTTGTCTCCCTCCCTGCCCTTGTTGAATAGACAATTTTTATAAAAATAGGATAAATAAAAGTTACACATTAACAGAGATTTATACTTATAAACTTCATTGTTTATAACGACTTAGCTTTGATGATTATAGAAATAATATAAATGAGGTAAAAATGTGATTGCAGATAGTGAAGTTGAAGATATTACTCGTTGAGAATAAATTGGTAGGCAAAATAACAGAGGGCATCGATGTTGTGGGAAATCAAATCATATCTCAGGAAGAATACTTCAGGTCTAGCTAAACCAATGTTTTTCTTTTCTTAATAATCATTTTAATGTTTGTGAATGTCATCTTTGTGTGGTATATGTATTAGTTGAGTTTCTTTACCTTTAAATTGGAGATACCTATTATCATAGTAAATTTGGTCTCATTTGTTTTGTTTCAAGTTAAGAATGTAATGATGTTACTTCTTATGGTAGCATAATTTTCGTTATGACGTTCAAAGATCAAATTTAGATATTCAAACAAACGATTATG ATGGAGAAATCTGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCCGCCGACTGCATCGACGGCTGTTTCACCGCCTGTGTTCAGAAAGATACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAATGCGGTCCAGATAGTGAAGTTGAAGATATTACTCGTTGA ATGGAGAAATCTGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCCGCCGACTGCATCGACGGCTGTTTCACCGCCTGTGTTCAGAAAGATACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAATGCGGTCCAGATAGTGAAGTTGAAGATATTACTCGTTGA MEKSAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDSEVEDITR Homology
BLAST of Spg002576 vs. NCBI nr
Match: KAG6600340.1 (hypothetical protein SDJN03_05573, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030996.1 hypothetical protein SDJN02_05035, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20 Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0
BLAST of Spg002576 vs. NCBI nr
Match: XP_008456107.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo]) HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19 Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0
BLAST of Spg002576 vs. NCBI nr
Match: XP_016901882.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo]) HSP 1 Score: 94.0 bits (232), Expect = 5.3e-16 Identity = 54/76 (71.05%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Spg002576 vs. NCBI nr
Match: KAE8650509.1 (hypothetical protein Csa_010751 [Cucumis sativus]) HSP 1 Score: 93.6 bits (231), Expect = 6.9e-16 Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0
BLAST of Spg002576 vs. NCBI nr
Match: KAG5016052.1 (hypothetical protein JHK85_022188 [Glycine max] >KAG5025833.1 hypothetical protein JHK86_021747 [Glycine max] >KAG5136996.1 hypothetical protein JHK82_021727 [Glycine max] >RZB97534.1 hypothetical protein D0Y65_020922 [Glycine soja]) HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11 Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 0
BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A1S3C2J8 (uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19 Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0
BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A0A0LC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 9.4e-19 Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0
BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A1S4E0W4 (uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16 Identity = 54/76 (71.05%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A445JGK3 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_020922 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11 Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 0
BLAST of Spg002576 vs. ExPASy TrEMBL
Match: A0A6A4NXS4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00041291 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11 Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 0
BLAST of Spg002576 vs. TAIR 10
Match: AT1G25275.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07 Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0
BLAST of Spg002576 vs. TAIR 10
Match: AT1G25275.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 4.8e-07 Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0
BLAST of Spg002576 vs. TAIR 10
Match: AT1G25275.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 50.4 bits (119), Expect = 6.2e-07 Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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