Spg001954 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACCAGAGACGTTTCTTCGAGAGAATCTAGAGAGTCTAACCCTATTGCATGTTGGAGTCCCCCTCGAGTGGATTTTTGGAAGCTAAATTCAGATGCCGCTTGTTTGGAAAATCCTCCAATGACAGGCGTCGGGGTGATATGTAGGAATAAGGAAGGGGCTGCTATGATAGCTTGTGCTAGATCCATCGATATTTTTTTGGAGGCCCATATTGTTGAGCTTTGGGCTATTCATGAAGGCTTAAAGCAAGCTTTATCTCTGGGCTGTCTGAGATTGGTGGTGGAATCTGATTGCAAAATGGCTGTTGATTTTATAAATGGGAAGGCCACATTATGGAGTGACGCAGAGGCCTGGGTGGAATCCATTTGGGCTTTAATGCCTTGCTTTTTGGATATTAGTTTTAAATTATGTCCAAGAGATAATAACAAAGTGGCTCATGGTATAGCTAGATATGCTAGATCTTTCCAATGTAATGACACTTGGGTAGGCTATTTCCCAAGTTGGTTATATAAGCTGGTCAATGATGACCTCTCTCTTAACCCATGTGGCGGTTTAATAAATTTCCTTATTTTTCAAAAAAAAAAATAATCATGAAATAATTTTAATTGGATAAACTATGTTAATTTAACTAATTAAAATTATTTAATTAATTTTTTTAATAAATATCCTTAACTACAATAATACTACAATAATTTAATATATTTGTATCCATAAAAATTAATTAGATAAATATTTTAATAATAATATGATTATTTATTTATTATAAAGAAATCCAAAAAAATAATTAATTGATTGTAAATAATCTTTAAGTAATTAATTATAGTTATTGAAAAAGGAATTTTTATACTAAATTCATTTAAATAATTTTAATTCAATAATTAAATATATTTTCGATAATGTTAATTCATTAATTATAATTTTAGTAAATATGTAATTACATCCATTTAATAAACTTGGACTAAGTATTTGTTTAAAAAAAACTTGAAAATTTTGGCAAATTATTATTTATTTAATCTAATTAAATAATTTATTATATTATTTTTTAATTTAGTATCCATTAGTTAGTTAATTAACTATATTCAAAATAAAATTGCATATAAAAATAAAAAAGAAGAGATGGGCAAAGAGAAAACTTATACTTTTGCAATGACATAGAAAGCCCTTGCTTATGGGCATAAATGATGCCTGTGAATGCTTTATTCCCAGGGGCTCACCACAGAAACCTTGAAACAAACAAGGGTATCTGAAACTCTTGCTCATCCCCATCTCCAAAACCCTACACCAAACGACCCCTTAGGGAATTGA ATGACCAGAGACGTTTCTTCGAGAGAATCTAGAGAGTCTAACCCTATTGCATGTTGGAGTCCCCCTCGAGTGGATTTTTGGAAGCTAAATTCAGATGCCGCTTGTTTGGAAAATCCTCCAATGACAGGCGTCGGGGTGATATGTAGGAATAAGGAAGGGGCTGCTATGATAGCTTGTGCTAGATCCATCGATATTTTTTTGGAGGCCCATATTGTTGAGCTTTGGGCTATTCATGAAGGCTTAAAGCAAGCTTTATCTCTGGGCTGTCTGAGATTGGTGGTGGAATCTGATTGCAAAATGGCTGTTGATTTTATAAATGGGAAGGCCACATTATGGAGTGACGCAGAGGCCTGGGTGGAATCCATTTGGGCTTTAATGCCTTGCTTTTTGGATATTAGTTTTAAATTATGTCCAAGAGATAATAACAAAGTGGCTCATGGTATAGCTAGATATGCTAGATCTTTCCAATGTAATGACACTTGGGGGCTCACCACAGAAACCTTGAAACAAACAAGGGTATCTGAAACTCTTGCTCATCCCCATCTCCAAAACCCTACACCAAACGACCCCTTAGGGAATTGA ATGACCAGAGACGTTTCTTCGAGAGAATCTAGAGAGTCTAACCCTATTGCATGTTGGAGTCCCCCTCGAGTGGATTTTTGGAAGCTAAATTCAGATGCCGCTTGTTTGGAAAATCCTCCAATGACAGGCGTCGGGGTGATATGTAGGAATAAGGAAGGGGCTGCTATGATAGCTTGTGCTAGATCCATCGATATTTTTTTGGAGGCCCATATTGTTGAGCTTTGGGCTATTCATGAAGGCTTAAAGCAAGCTTTATCTCTGGGCTGTCTGAGATTGGTGGTGGAATCTGATTGCAAAATGGCTGTTGATTTTATAAATGGGAAGGCCACATTATGGAGTGACGCAGAGGCCTGGGTGGAATCCATTTGGGCTTTAATGCCTTGCTTTTTGGATATTAGTTTTAAATTATGTCCAAGAGATAATAACAAAGTGGCTCATGGTATAGCTAGATATGCTAGATCTTTCCAATGTAATGACACTTGGGGGCTCACCACAGAAACCTTGAAACAAACAAGGGTATCTGAAACTCTTGCTCATCCCCATCTCCAAAACCCTACACCAAACGACCCCTTAGGGAATTGA MTRDVSSRESRESNPIACWSPPRVDFWKLNSDAACLENPPMTGVGVICRNKEGAAMIACARSIDIFLEAHIVELWAIHEGLKQALSLGCLRLVVESDCKMAVDFINGKATLWSDAEAWVESIWALMPCFLDISFKLCPRDNNKVAHGIARYARSFQCNDTWGLTTETLKQTRVSETLAHPHLQNPTPNDPLGN Homology
BLAST of Spg001954 vs. NCBI nr
Match: XP_042962749.1 (uncharacterized protein LOC122297028 [Carya illinoinensis]) HSP 1 Score: 91.3 bits (225), Expect = 1.0e-14 Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = 0
BLAST of Spg001954 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida]) HSP 1 Score: 90.5 bits (223), Expect = 1.7e-14 Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = 0
BLAST of Spg001954 vs. NCBI nr
Match: VVA32947.1 (PREDICTED: retrotransposon [Prunus dulcis]) HSP 1 Score: 88.6 bits (218), Expect = 6.5e-14 Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 0
BLAST of Spg001954 vs. NCBI nr
Match: OMO72757.1 (hypothetical protein CCACVL1_17615 [Corchorus capsularis]) HSP 1 Score: 88.6 bits (218), Expect = 6.5e-14 Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 0
BLAST of Spg001954 vs. NCBI nr
Match: XP_042974894.1 (uncharacterized protein LOC122306534 [Carya illinoinensis]) HSP 1 Score: 88.2 bits (217), Expect = 8.5e-14 Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 0
BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A1R3HQR7 (Ribonuclease H OS=Corchorus capsularis OX=210143 GN=CCACVL1_17615 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14 Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 0
BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A5E4FZN9 (PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14 Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 0
BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A2I4FLN6 (uncharacterized protein LOC109000195 OS=Juglans regia OX=51240 GN=LOC109000195 PE=4 SV=2) HSP 1 Score: 87.8 bits (216), Expect = 5.3e-14 Identity = 50/143 (34.97%), Postives = 71/143 (49.65%), Query Frame = 0
BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A251QGB9 (RNase H domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_2G082600 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13 Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 0
BLAST of Spg001954 vs. ExPASy TrEMBL
Match: A0A6P6UE91 (uncharacterized protein LOC113710130 OS=Coffea arabica OX=13443 GN=LOC113710130 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13 Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 0
BLAST of Spg001954 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11 Identity = 44/148 (29.73%), Postives = 65/148 (43.92%), Query Frame = 0
BLAST of Spg001954 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 60.1 bits (144), Expect = 2.3e-09 Identity = 33/137 (24.09%), Postives = 63/137 (45.99%), Query Frame = 0
BLAST of Spg001954 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06 Identity = 36/145 (24.83%), Postives = 64/145 (44.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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