Spg001612 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001612
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Translocon-associated protein subunit beta
Location	scaffold10: 821427 .. 824260 (-)
RNA-Seq Expression	Spg001612
Synteny	Spg001612

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATTTTTGCGTACCTAATTTATCCGACGGCTCCTTCTCAAAGTCCCCATTTCGTCGACGCCTCTCTTCTCCGCCGATCAACTTTGTGGCCCTAATTTTGACGATTTCATGGCGAATCCGATTCAACCTCCGCTGATCTATGCCCTTTTCGCTTTGCTCTTCGTCTCCTCCACGATCGCCAGCTCCGATGTTCCATTCATCGTCGTGCACAAGAAGGCCTCCCTCACTCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTATCCATCGACATTTACAATCAAGGATCTTCGTATGTTCTGTTCAATTCCTTAAATCTGATTTCGCTTTTCTTTTCTAGATTTAGCTTTACTCACCCTACGGTCTACGTGTTCTAGATCGATTCGATTCTTTGCGCATGCGTGGTTTGATTCGTTATGTTTTGTTCTGGATCTAAATTGGATTTGGTTGTGAGTTCGTTGGGTATTTCTCTGCTCTTCGCTTCTCTCTCTCTGTATATGTGGTTGTTTTTAAGTTGTCGTTTTATGGGAGAAAAATGTTAGGTTTAGGTTCGGGAAAATGTTCTTAATTAGAAGAATAGATGATTTCATGGATGTGAAATTTGGTGCATTTGTATTTTATCAATTGTGGAAAAGGTTCGTAATGTCTTGGTTCGATACTAAGATCCTCTAGGCTATTTTGAAATCGAACCAGGCGCAGCTACCTTAGCTGCATCAATAAATTCTTTATCTTGGTTTTTTAATGTAAATTTTCGTAAAAGGGTTTACCAAGTTACTTTATTTTGACGATTGCTGCATTGTCTGTCTGAATATTCGATCAGCTATGATATTCGTCGTCATTCCAGGAGTTGTACCTAGATATTGTTTCACCTTAAAAATTTGCTCAATACGGATGCTATATTTTTCATGCAACAGGAAGAAATGAACTGCTCCTTGGAGTGAATTTTTGTCAAAGTCTTACAATTTGATGTAAATTTGTTAGTTAATGAGTTTCAAAGGTACGGTAGACGTGGTGAGAGGAGGGTTGGGTGTCTGTGTGTGTGTGGAGCACTAACTGAAAGGTAGAAATGTCTAAATCAAAGTAGCAGAAGTATCTATTTTGACCTAAATGAAGCAAATAATGAGAGAAGCTTGGGGGCCATTCACAAGATGCTCGTTTGACATGTTTATTTGTTCTTGTTTTAAGATAAAGGAGAGAGTTGAATAGAATAGAAACTTTGGAAAGGAGGAGTTGCCTGATTGACATATCTTTCTCTTTCTTTTTACGTTAAATCTCCATTAGTTTACTATTATTTATCTATCCTGTTGCTTTTGTTGGCCTTTGTACTTTCCATGAAGCGGAATATCGGATTATCTGTTCAAATTTATCTTTTCAACTTCATACAGATCTTATTTCTTCATTTTTATGTTGCTTAAAGCTTTTGTAGTTTCCCTGTCTTATGTTATCCCTGATTATAGAGGGGTCTTTTTTTGTTTTTTAAACTCTATTTCCTTTTGATGTCTAGCCCTTTTCTATGTTTTATTTCTAAGTGGCCCGGTTTCTTATTTTCACCCCCTCTTTTTTGTATCTCTTTTAATGATTACCAGGACCGCATATGATGTAAGTTTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATGTTATCAGTGGTGAAACTTCCAAATCATGGGAAAGACTTGATGCGTAAGTGACACCGTTAGTGTAGTAATCTTTCCTACATGTCACGGTTCCCCCATTGGGTTTTTGTGCCACTAACACAAATCTTCTGTTTGACAGTGGTGGTCATCTATCTCATTCTTTTGAGTTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCCGTTGTCACATTCCGTATCCCTACAAAGTCTGCTTTACAGGTCAATAATCCTTTCAATGATAGTATTGTCTTCTGATTACTTAAAGTTGCAGACGTTTTACCATTCTTCTGTATATCTGTAGGAAGCCTTGTCAACCCCGATACTACCTTTGGATGTCCTCGCTGACAGGCCACCAGAGAAGAAGCTTGAATGGGTAAGTTCATCAAAACAGTTCTTTTTCCACTTCAAGCCTGATGATTTATAGTTTTGCCAATTTGTTTAACTGGAGCAATCTTTTGCCTTTGCATGGAATTTATCTTTCACTGGGGCGTAAATTCGACAGGTTAAGGTATGATCCATTCCATGCTCTCATTCTCTCCACTTTGTTTTATCCCTCACCCTCGCGCCGGGAGAGGGGGTGGGGGTGCTAGCTGCATTTTGACTTCTGGTCTTTTTATTCACATGAGATATTTTCCTCCCTGCAGAGGCTGCTCGCGAAGTACGGCTCCCTGATCTCGGTGATCTCCATCGTAGTTCTGTTCATCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAGGGAAGCAAGAAGAAGCGCTAATTCGAGATTGGGAGATGATTCTAAAAGTAGTTTTAACTGTGTTTTACTTTTGATCCCCCACCCAAATTCGGGGATGTTCCCCTGATATTTTGTTGGGTTAGCAAAGGTACAGAAACTTTTTGAATTGATAGTGTTTTTTTGTTGACCTCTAATGAAGTAGAGCCGGAGGAAACAGAAGAAGAGTTAATCATAGGCACGATCACGAACGAGAGTCAGTCAAAACACATGGTGTAGTAGTTGAGTTGTTGCTTTCTAAGTTGTGTCGGATTTGTTCATCATATTACTGAGTTGTTTCTTCTTTCTTAGCCATCAATCTTTGCCTTGTGCTCTTTACTACGCAAATGATTAGAAAATGGACAGGAAGGATCTTAAACTAAGTTTGGTATTTCAACTTTTTAATTTCAAG

mRNA sequence

ATGGCGAATCCGATTCAACCTCCGCTGATCTATGCCCTTTTCGCTTTGCTCTTCGTCTCCTCCACGATCGCCAGCTCCGATGTTCCATTCATCGTCGTGCACAAGAAGGCCTCCCTCACTCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTATCCATCGACATTTACAATCAAGGATCTTCGACCGCATATGATGTAAGTTTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATGTTATCAGTGGTGAAACTTCCAAATCATGGGAAAGACTTGATGCTGGTGGTCATCTATCTCATTCTTTTGAGTTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCCGTTGTCACATTCCGTATCCCTACAAAGTCTGCTTTACAGGAAGCCTTGTCAACCCCGATACTACCTTTGGATGTCCTCGCTGACAGGCCACCAGAGAAGAAGCTTGAATGGGTTAAGAGGCTGCTCGCGAAGTACGGCTCCCTGATCTCGGTGATCTCCATCGTAGTTCTGTTCATCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAGGGAAGCAAGAAGAAGCGCTAA

Coding sequence (CDS)

ATGGCGAATCCGATTCAACCTCCGCTGATCTATGCCCTTTTCGCTTTGCTCTTCGTCTCCTCCACGATCGCCAGCTCCGATGTTCCATTCATCGTCGTGCACAAGAAGGCCTCCCTCACTCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTATCCATCGACATTTACAATCAAGGATCTTCGACCGCATATGATGTAAGTTTGAACGATGCAAGCTGGCCAGGAGATGTCTTTGATGTTATCAGTGGTGAAACTTCCAAATCATGGGAAAGACTTGATGCTGGTGGTCATCTATCTCATTCTTTTGAGTTAGAAGCAAAAACAAAAGGAATGTTCCATGGTTCACCTGCCGTTGTCACATTCCGTATCCCTACAAAGTCTGCTTTACAGGAAGCCTTGTCAACCCCGATACTACCTTTGGATGTCCTCGCTGACAGGCCACCAGAGAAGAAGCTTGAATGGGTTAAGAGGCTGCTCGCGAAGTACGGCTCCCTGATCTCGGTGATCTCCATCGTAGTTCTGTTCATCTATCTTGTGGCCAGCCCATCGAAATCTGCTGCAAAGGGAAGCAAGAAGAAGCGCTAA

Protein sequence

MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTFRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGSKKKR

Homology

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BLAST of Spg001612 vs. NCBI nr
Match: XP_022156478.1 (translocon-associated protein subunit beta [Momordica charantia])

HSP 1 Score: 347.4 bits (890), Expect = 7.8e-92
Identity = 180/194 (92.78%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANPIQ PLI  LFALLFV+STIA+SDVPFIV HKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWP DVFD+ISGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEA STPILPLDVLADRPPEKK EWVKRLLAKYGSLISV+SIVVLFIYLVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. NCBI nr
Match: XP_038894726.1 (translocon-associated protein subunit beta [Benincasa hispida])

HSP 1 Score: 347.4 bits (890), Expect = 7.8e-92
Identity = 175/194 (90.21%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANPIQPPLI+ L ALLFVSSTIA+SDVPFIV HKKASLTRLKSG ERVSVSIDIYN+GS
Sbjct: 1   MANPIQPPLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNRGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYD SLNDASWP D+FD++SGETSKSWERLDAGGH+SHSFELEAKTKG+FHGSPA++T
Sbjct: 61  STAYDASLNDASWPEDMFDIVSGETSKSWERLDAGGHISHSFELEAKTKGLFHGSPAIIT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEALSTPILPLD+LAD+PPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDILADKPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. NCBI nr
Match: XP_008450004.1 (PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_008450005.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_016900804.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >KAA0037850.1 translocon-associated protein subunit beta [Cucumis melo var. makuwa] >TYK27227.1 translocon-associated protein subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 175/194 (90.21%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA+P  PPLI  LFA LF+SSTIA+SDVPFIV HKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWPGD+FD++SGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEALSTPILPLDVLADRPPEKK EWVKRLL KYGSLISVISI+VLFIYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLTKYGSLISVISIIVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. NCBI nr
Match: XP_022928574.1 (translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] >XP_023529270.1 translocon-associated protein subunit beta-like [Cucurbita pepo subsp. pepo] >KAG6588872.1 Translocon-associated protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342.0 bits (876), Expect = 3.3e-90
Identity = 178/194 (91.75%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANP   PL+Y L ALL VSSTIA+SDVPFIV HKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEALSTPILPLDVLADR PE K EWVKRLLAKYGSLISV SIV+LFIYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKS+AKGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. NCBI nr
Match: XP_022983434.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita maxima])

HSP 1 Score: 341.7 bits (875), Expect = 4.3e-90
Identity = 175/194 (90.21%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MAN IQ  LI+ L ALLFVSSTIASSDVPFIV HKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDV+LNDASWPGDVFD++SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEALSTPILPLDVLADRPPEKK EWVKRLLAKYGSLISV+S VVLF+YLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. ExPASy Swiss-Prot
Match: P43308 (Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.6e-07
Identity = 28/86 (32.56%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 36  KASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDVFDVISGETSKSWERLDAG 95
           K+ L R       +++  +IYN GSS A DV L+D S+P + F ++SG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 96  GHLSHSFELEAKTKGMFHGSPAVVTF 122
            ++SH+  L     G F+ + A +T+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of Spg001612 vs. ExPASy Swiss-Prot
Match: Q5E9E4 (Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-07
Identity = 34/113 (30.09%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 9   LIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 68
           L +A+ AL  V+     +     ++  K+ L R       +++  +IYN GSS A DV L
Sbjct: 4   LAFAVLALFAVTQAEEGAR----LLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 63

Query: 69  NDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTF 122
           +D S+P + F ++SG  +  W+R+    ++SH+  L     G F+ + A VT+
Sbjct: 64  SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTY 112

[Close]

BLAST of Spg001612 vs. ExPASy Swiss-Prot
Match: P23438 (Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-07
Identity = 31/109 (28.44%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 13  LFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDAS 72
           L ++L     ++ ++    ++  K+ L R       +++  +IYN GSS A DV L+D S
Sbjct: 4   LASVLLALFAVSHAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDS 63

Query: 73  WPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTF 122
           +P + F ++SG  +  W+R+    ++SH+  L     G F+ + A VT+
Sbjct: 64  FPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTY 112

[Close]

BLAST of Spg001612 vs. ExPASy Swiss-Prot
Match: Q9CPW5 (Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 34/113 (30.09%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 9   LIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 68
           L   + ALL VS     +     ++  K+ L R       +++  +IYN GSS A DV L
Sbjct: 4   LAVVVLALLAVSQAEEGAR----LLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 63

Query: 69  NDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVTF 122
           +D S+P + F ++SG  +  W+R+    ++SH+  L     G F+ + A +T+
Sbjct: 64  SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of Spg001612 vs. ExPASy TrEMBL
Match: A0A6J1DQQ5 (Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC111023364 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.8e-92
Identity = 180/194 (92.78%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANPIQ PLI  LFALLFV+STIA+SDVPFIV HKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPIQSPLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWP DVFD+ISGETSKSWERLDAG HLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVSLNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEA STPILPLDVLADRPPEKK EWVKRLLAKYGSLISV+SIVVLFIYLVA
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. ExPASy TrEMBL
Match: A0A1S3BNZ1 (Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC103491721 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.1e-91
Identity = 175/194 (90.21%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA+P  PPLI  LFA LF+SSTIA+SDVPFIV HKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWPGD+FD++SGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEALSTPILPLDVLADRPPEKK EWVKRLL KYGSLISVISI+VLFIYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLTKYGSLISVISIIVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. ExPASy TrEMBL
Match: A0A5D3DTY4 (Translocon-associated protein subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G001090 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.1e-91
Identity = 175/194 (90.21%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA+P  PPLI  LFA LF+SSTIA+SDVPFIV HKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MAHPFLPPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWPGD+FD++SGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEALSTPILPLDVLADRPPEKK EWVKRLL KYGSLISVISI+VLFIYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLTKYGSLISVISIIVLFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. ExPASy TrEMBL
Match: A0A6J1EL83 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111435340 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.6e-90
Identity = 178/194 (91.75%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MANP   PL+Y L ALL VSSTIA+SDVPFIV HKKASLTRLKSGAERVSVSIDIYNQGS
Sbjct: 1   MANPTPAPLVYVLLALLLVSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT
Sbjct: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEALSTPILPLDVLADR PE K EWVKRLLAKYGSLISV SIV+LFIYLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRLPENKFEWVKRLLAKYGSLISVNSIVILFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKS+AKGSKKKR
Sbjct: 181 SPSKSSAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. ExPASy TrEMBL
Match: A0A6J1J7C6 (Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482040 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.1e-90
Identity = 175/194 (90.21%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MAN IQ  LI+ L ALLFVSSTIASSDVPFIV HKKA+LTRLKSG ERVSVSI+IYNQGS
Sbjct: 1   MANLIQARLIHLLLALLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           STAYDV+LNDASWPGDVFD++SGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAV+T
Sbjct: 61  STAYDVTLNDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVIT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FR+PTKSALQEALSTPILPLDVLADRPPEKK EWVKRLLAKYGSLISV+S VVLF+YLVA
Sbjct: 121 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           SPSKSAAKGSKKKR
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spg001612 vs. TAIR 10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 255.4 bits (651), Expect = 3.7e-68
Identity = 132/194 (68.04%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI A+   + VS++ A+S+VPF+VVHKKA+L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+AYDV+L D SW    F+V++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRIPTK ALQEA STP+LPLD+LAD+PP K L+  KRLLAKYGSL+SVIS+VV FIYLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of Spg001612 vs. TAIR 10
Match: AT5G14030.2 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 255.4 bits (651), Expect = 3.7e-68
Identity = 132/194 (68.04%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI A+   + VS++ A+S+VPF+VVHKKA+L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+AYDV+L D SW    F+V++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRIPTK ALQEA STP+LPLD+LAD+PP K L+  KRLLAKYGSL+SVIS+VV FIYLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of Spg001612 vs. TAIR 10
Match: AT5G14030.3 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 255.4 bits (651), Expect = 3.7e-68
Identity = 132/194 (68.04%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI A+   + VS++ A+S+VPF+VVHKKA+L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+AYDV+L D SW    F+V++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRIPTK ALQEA STP+LPLD+LAD+PP K L+  KRLLAKYGSL+SVIS+VV FIYLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

[Close]

BLAST of Spg001612 vs. TAIR 10
Match: AT5G14030.4 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 255.4 bits (651), Expect = 3.7e-68
Identity = 132/194 (68.04%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   MANPIQPPLIYALFALLFVSSTIASSDVPFIVVHKKASLTRLKSGAERVSVSIDIYNQGS 60
           MA  +   LI A+   + VS++ A+S+VPF+VVHKKA+L RLKSGAERVSVS DIYNQGS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLNDASWPGDVFDVISGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVVT 120
           S+AYDV+L D SW    F+V++G TSKSWERLDAGG LSHS ELEAK KG+F+G+PAVVT
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRIPTKSALQEALSTPILPLDVLADRPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVA 180
           FRIPTK ALQEA STP+LPLD+LAD+PP K L+  KRLLAKYGSL+SVIS+VV FIYLVA
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SPSKSAAKGSKKKR 195
           +P  + +K S KK+
Sbjct: 181 TPKSNVSKASSKKK 194

The following BLAST results are available for this feature:

BLAST of Spg001612 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156478.1	7.8e-92	92.78	translocon-associated protein subunit beta [Momordica charantia]	[more]
XP_038894726.1	7.8e-92	90.21	translocon-associated protein subunit beta [Benincasa hispida]	[more]
XP_008450004.1	1.5e-90	90.21	PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_0084500...	[more]
XP_022928574.1	3.3e-90	91.75	translocon-associated protein subunit beta-like isoform X1 [Cucurbita moschata] ...	[more]
XP_022983434.1	4.3e-90	90.21	translocon-associated protein subunit beta isoform X1 [Cucurbita maxima]	[more]

BLAST of Spg001612 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43308	3.6e-07	32.56	Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 ...	[more]
Q5E9E4	6.1e-07	30.09	Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV...	[more]
P23438	6.1e-07	28.44	Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=...	[more]
Q9CPW5	1.0e-06	30.09	Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1...	[more]

BLAST of Spg001612 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQQ5	3.8e-92	92.78	Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A1S3BNZ1	7.1e-91	90.21	Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC1034917...	[more]
A0A5D3DTY4	7.1e-91	90.21	Translocon-associated protein subunit beta OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1EL83	1.6e-90	91.75	Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1J7C6	2.1e-90	90.21	Translocon-associated protein subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Spg001612 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14030.1	3.7e-68	68.04	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.2	3.7e-68	68.04	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.3	3.7e-68	68.04	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.4	3.7e-68	68.04	translocon-associated protein beta (TRAPB) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008856	Translocon-associated protein subunit beta	PIRSF	PIRSF016400	TRAP-beta	coord: 6..194 e-value: 2.7E-59 score: 197.7
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 16..190 e-value: 4.7E-54 score: 182.5
None	No IPR available	PANTHER	PTHR12861:SF7	TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETA-LIKE	coord: 9..193
None	No IPR available	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 9..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001612.1	Spg001612.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005783	endoplasmic reticulum