Spg001541 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001541
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transportin-3 isoform X1
Location	scaffold10: 160636 .. 161628 (+)
RNA-Seq Expression	Spg001541
Synteny	Spg001541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAACGATTACGTAAGTTTGGTTTATTGATATGTTCGTCTATTTATTTCTAGGGTTGTAAAAGTTGTAAGCCTCTGTGGACTGGGCCAGTCGCTTTGGCGTAATCTGCTGGAGTTTAAAATGCAGCCATGGACACAGCTTGAGAGTAAGCAAATATGCTGTAGATGGCGTCGCGTTTAGGAATGGAATTTCTTGAAAGTGTTTCTGTAGTTGCAGCCAGCATTCTTGGGCCATTGTTATGTTGTGTCCGAGTCAATTGCTAGTTTCTTCTGAGAATACTGAAAACAAAGATAAACTACATAGGTGGTAAAGTGATGGAATTGCGAATGAAAGTCACTCAAGCAGTTCACGTCCTAAATCATGATACCCAATCTTGCAACCGTGTGGCAGCAAATCAATGGTTAGTTCAGTTTCAACAGACAGGTGCTGCTTGGGAAGTTGCCACTGCTATCCTTACCTCCGATCACGTTCAACATCCGCTGTCCTCCTTTGTCCCTGATTTGGAAGTCGAGTTCTTTGCTGCTCAGATTCTTAAACGCAAGGTTAGTAGTTTGACTTTAGTTTTAATACCAATCCAGTTTCGCATTGCTGAAACATTTTTCTTTTCCTTATTTTGTGTCAGCCTTTTGTCTTGCTTAAAAATAATAACTTCGATACGGGGTTTAATTTTGCAGCCAGGAAGAATCCAACTTATATAAAGTTAATTTTTTTCTTTTTAAAATTTAAAATAATTTATTATTATTATTTTTTAAATATATAAATTCTTTATTTTAGCCAGTAACGAAACCTTTCATTTGAAACAACTCCAAAAAGGGAGTGAAGAAGAAAAAAAGAGAAGAGAACAAACTAAGGCCTATGAAAGCTCCCAATTAATGTCCTGAAAAAATAATAAACAAATAATTTAGAAAGAAACACCATTCTAAAGCTTTGAATTTGGAAATATCAAACTGCTCTAACCGACACTGCTGTGTATTCTCAAGAACCCTTAG

mRNA sequence

ATGGTGGAACGATTACGTGGTAAAGTGATGGAATTGCGAATGAAAGTCACTCAAGCAGTTCACGTCCTAAATCATGATACCCAATCTTGCAACCGTGTGGCAGCAAATCAATGGTTAGTTCAGTTTCAACAGACAGGTGCTGCTTGGGAAGTTGCCACTGCTATCCTTACCTCCGATCACGTTCAACATCCGCTGTCCTCCTTTGTCCCTGATTTGGAAGTCGAGTTCTTTGCTGCTCAGATTCTTAAACGCAAGAACCCTTAG

Coding sequence (CDS)

ATGGTGGAACGATTACGTGGTAAAGTGATGGAATTGCGAATGAAAGTCACTCAAGCAGTTCACGTCCTAAATCATGATACCCAATCTTGCAACCGTGTGGCAGCAAATCAATGGTTAGTTCAGTTTCAACAGACAGGTGCTGCTTGGGAAGTTGCCACTGCTATCCTTACCTCCGATCACGTTCAACATCCGCTGTCCTCCTTTGTCCCTGATTTGGAAGTCGAGTTCTTTGCTGCTCAGATTCTTAAACGCAAGAACCCTTAG

Protein sequence

MVERLRGKVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFVPDLEVEFFAAQILKRKNP

Homology

[Close]

BLAST of Spg001541 vs. NCBI nr
Match: XP_038891351.1 (transportin-3 [Benincasa hispida] >XP_038891359.1 transportin-3 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 2.5e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 10 MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV 69
          MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV
Sbjct: 1  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV 60

Query: 70 PDLEVEFFAAQILKRK 86
          PDLEVEFFAAQILKRK
Sbjct: 61 PDLEVEFFAAQILKRK 76

[Close]

BLAST of Spg001541 vs. NCBI nr
Match: KAA0048525.1 (transportin-3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 4.8e-33
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 8   KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSS 67
           K MELRMKV+QAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQ PLSS
Sbjct: 63  KEMELRMKVSQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQPPLSS 122

Query: 68  FVPDLEVEFFAAQILKRK 86
           FVPDLEVEFFAAQILKRK
Sbjct: 123 FVPDLEVEFFAAQILKRK 140

[Close]

BLAST of Spg001541 vs. NCBI nr
Match: TYK28316.1 (transportin-3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 4.8e-33
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 8   KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSS 67
           K MELRMKV+QAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQ PLSS
Sbjct: 63  KEMELRMKVSQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQPPLSS 122

Query: 68  FVPDLEVEFFAAQILKRK 86
           FVPDLEVEFFAAQILKRK
Sbjct: 123 FVPDLEVEFFAAQILKRK 140

[Close]

BLAST of Spg001541 vs. NCBI nr
Match: XP_022148146.1 (transportin MOS14 isoform X3 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 10 MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV 69
          MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFV
Sbjct: 1  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDRIQHPLSSFV 60

Query: 70 PDLEVEFFAAQILKRK 86
          P+LEVEFFAAQILKRK
Sbjct: 61 PELEVEFFAAQILKRK 76

[Close]

BLAST of Spg001541 vs. NCBI nr
Match: XP_022148144.1 (transportin-3 isoform X2 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 10 MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV 69
          MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFV
Sbjct: 1  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDRIQHPLSSFV 60

Query: 70 PDLEVEFFAAQILKRK 86
          P+LEVEFFAAQILKRK
Sbjct: 61 PELEVEFFAAQILKRK 76

[Close]

BLAST of Spg001541 vs. ExPASy TrEMBL
Match: A0A5D3DX38 (Transportin-3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001410 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.3e-33
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 8   KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSS 67
           K MELRMKV+QAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQ PLSS
Sbjct: 63  KEMELRMKVSQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQPPLSS 122

Query: 68  FVPDLEVEFFAAQILKRK 86
           FVPDLEVEFFAAQILKRK
Sbjct: 123 FVPDLEVEFFAAQILKRK 140

[Close]

BLAST of Spg001541 vs. ExPASy TrEMBL
Match: A0A5A7U4I2 (Transportin-3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001460 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.3e-33
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 8   KVMELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSS 67
           K MELRMKV+QAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQ PLSS
Sbjct: 63  KEMELRMKVSQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQPPLSS 122

Query: 68  FVPDLEVEFFAAQILKRK 86
           FVPDLEVEFFAAQILKRK
Sbjct: 123 FVPDLEVEFFAAQILKRK 140

[Close]

BLAST of Spg001541 vs. ExPASy TrEMBL
Match: A0A6J1D496 (transportin-3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016896 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 10 MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV 69
          MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFV
Sbjct: 1  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDRIQHPLSSFV 60

Query: 70 PDLEVEFFAAQILKRK 86
          P+LEVEFFAAQILKRK
Sbjct: 61 PELEVEFFAAQILKRK 76

[Close]

BLAST of Spg001541 vs. ExPASy TrEMBL
Match: A0A6J1D3A4 (transportin-3 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111016896 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 10 MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV 69
          MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFV
Sbjct: 1  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDRIQHPLSSFV 60

Query: 70 PDLEVEFFAAQILKRK 86
          P+LEVEFFAAQILKRK
Sbjct: 61 PELEVEFFAAQILKRK 76

[Close]

BLAST of Spg001541 vs. ExPASy TrEMBL
Match: A0A6J1D4H9 (transportin MOS14 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111016896 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 10 MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV 69
          MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSD +QHPLSSFV
Sbjct: 1  MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDRIQHPLSSFV 60

Query: 70 PDLEVEFFAAQILKRK 86
          P+LEVEFFAAQILKRK
Sbjct: 61 PELEVEFFAAQILKRK 76

[Close]

BLAST of Spg001541 vs. TAIR 10
Match: AT1G12930.1 (ARM repeat superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 2.7e-18
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 10 MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV 69
          MEL+ KV +A+HVLNHD +S NRVAANQWLVQFQ T AAW+V+T++LTS     P+ S  
Sbjct: 1  MELQRKVAEAIHVLNHDPESSNRVAANQWLVQFQLTPAAWDVSTSLLTS-----PIVSL- 60

Query: 70 PDLEVEFFAAQILKRK 86
             +++FFAAQIL+RK
Sbjct: 61 --FDLQFFAAQILRRK 68

[Close]

BLAST of Spg001541 vs. TAIR 10
Match: AT5G62600.1 (ARM repeat superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.5e-04
Identity = 28/76 (36.84%), Postives = 40/76 (52.63%), Query Frame = 0


Query: 10 MELRMKVTQAVHVLNHDTQSCNRVAANQWLVQFQQTGAAWEVATAILTSDHVQHPLSSFV 69
          ME +  V +A++ L H      RV A++WL  FQ T  AW+VA      D++ H  SS  
Sbjct: 1  MEHQNAVKEALNALYHHPDDTVRVHADRWLQNFQGTLDAWQVA------DNLLHDSSS-- 60

Query: 70 PDLEVEFFAAQILKRK 86
           +LE   F +Q L+ K
Sbjct: 61 -NLETLIFCSQTLRSK 67

The following BLAST results are available for this feature:

BLAST of Spg001541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891351.1	2.5e-34	100.00	transportin-3 [Benincasa hispida] >XP_038891359.1 transportin-3 [Benincasa hispi...	[more]
KAA0048525.1	4.8e-33	96.15	transportin-3 isoform X1 [Cucumis melo var. makuwa]	[more]
TYK28316.1	4.8e-33	96.15	transportin-3 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_022148146.1	8.2e-33	96.05	transportin MOS14 isoform X3 [Momordica charantia]	[more]
XP_022148144.1	8.2e-33	96.05	transportin-3 isoform X2 [Momordica charantia]	[more]

BLAST of Spg001541 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg001541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX38	2.3e-33	96.15	Transportin-3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U4I2	2.3e-33	96.15	Transportin-3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A6J1D496	4.0e-33	96.05	transportin-3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016896 PE=4 SV=...	[more]
A0A6J1D3A4	4.0e-33	96.05	transportin-3 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111016896 PE=4 SV=...	[more]
A0A6J1D4H9	4.0e-33	96.05	transportin MOS14 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111016896 PE=4...	[more]

BLAST of Spg001541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12930.1	2.7e-18	60.53	ARM repeat superfamily protein	[more]
AT5G62600.1	6.5e-04	36.84	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 11..86 e-value: 2.1E-18 score: 67.9
None	No IPR available	PANTHER	PTHR12363:SF44	ARM REPEAT SUPERFAMILY PROTEIN	coord: 10..85
None	No IPR available	PANTHER	PTHR12363	TRANSPORTIN 3 AND IMPORTIN 13	coord: 10..85
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 10..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001541.1	Spg001541.1	mRNA