Spg001039 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001039
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Eukaryotic translation initiation factor 4C
Location	scaffold8: 40521399 .. 40523214 (-)
RNA-Seq Expression	Spg001039
Synteny	Spg001039

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAACCTAGGGCTCCAATTCTTGCGTTTTGGCCTTGATTTCCACCGCCTTCTGCTTCGCCTTCTCTTCTTTGGTAAAGGTGATCAAGTTCTGTTTTTGTTGCACTTTTTTCTTCATTCCTTATATTCATCATTAAGTTTAACGTCAGATTTTTCGTCAAGTATTTGTTTCGATGTTGTGCGGCCGATCCTTTTCTGTTTGTTTATTTATTTATTGCCTCGGATTTGCTGGATATATTAAGTTTTGCCGATAATTGTTTCTTGGGTGGGGGTTATATGACATGTTGATGGTTTAGGTGTAACCCTCTCTATGCGATTGAAAAAGGTTTTCTATTAGATGGAGATCGTTGATTTTAGATTCTAGATTTTCTCTTTTTAATCGATGAATTCTTTTATGATTCTAAGTGCTTTTTTTACTCTTTCTGATTCTGGGAAGGATATTGATTTTCTAACTCACTATGATTTAGGCCCATTTCTTAACGATTTTGTTTTTAGTGTTCTGTTTTGTAAAATTGTTCTTGTTTCCTCACAATTGCTTTCAGCTCTCTTAAATAAACATGTCAATTCTTAGCCAAGTTCCAAAATCAAAAAGAGGTTTAGAAACTTTATTTTTTTCTTCCAAAATTTGGGTTGGATTTCTAAAAAGTAGATAACATAATAAAGAAACCCATGTATGTAGAATTTATAAGCTTAATTTTCAAAAACCACAAACTATATGGTTATCAAACTATATGGAAGTAGAATTTATAGCTAATGAATGATTTATATTATGCTGTTCGTTTGTTTTTTTCATCTTATCCTTGTTTCATCTGTGGTGGGCTCTTGAGGGTTGGCTGCAATTTTCTGAATTTTAACTGGCAGGTGGTAAATATTTGATGTGACTCTGTATAACTAGATGCAAGTGGTTGCTTGAGATTATTATTTATATAACCTGGTTATATTAAGAGCGCAAGGTTTGATTTGTGTGGGGATCTCTGTATGTTATTGGTATCACAATTGCTCATATTGCATTTCATATGTTTGACAGAAACAGCAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAGGATGGTCAGGAGTATGCACAAGTTCTTAGAATGTTGGGAAATGGTCGGTGTGAGGCAATGTGCATCGATGGGACGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTTGTCGGTCTTCGTGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCGTATGGTGAGCTTCCTGAGAGCACCCGTCTCAACGAGGGTATCGCTGGTGGTATCGACGACGAGGATGATGGTGGGGCTGATGATTATCTTGAGTTTGAGGATGAAGATATTGATAAGATTTAGATTTTGAGTGACTTTTCCATCTGTTGAGTTTACTGTTCTGGATGAGAGACTATGGATGTTCAGTAATATGGTTTTGCTCCGAGCACAGAAGGGGCAATTGCTCTAGTCTTAGATTAAGAAATGTGCATAAAAACTTGAGTTTTAAAGCTTTTTCTAGTTCGTCTCTCTTTCATTTTTAGAGTTAGATTATATACATATGTATGAAGTTTGACCGTAAAATTTACACGATGAAATAATTTCTGACTCCATCTCAATAATTTGTATTTCTGCATTGTTACTGAATTTTTGTTTGTTTGATAAGATCTGACGTTGATACATACATATGCGTAGTTAAATTTGCC

mRNA sequence

CGCAACCTAGGGCTCCAATTCTTGCGTTTTGGCCTTGATTTCCACCGCCTTCTGCTTCGCCTTCTCTTCTTTGGTAAAGAAACAGCAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAGGATGGTCAGGAGTATGCACAAGTTCTTAGAATGTTGGGAAATGGTCGGTGTGAGGCAATGTGCATCGATGGGACGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTTGTCGGTCTTCGTGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCGTATGGTGAGCTTCCTGAGAGCACCCGTCTCAACGAGGGTATCGCTGGTGGTATCGACGACGAGGATGATGGTGGGGCTGATGATTATCTTGAGTTTGAGGATGAAGATATTGATAAGATTTAG

Coding sequence (CDS)

CGCAACCTAGGGCTCCAATTCTTGCGTTTTGGCCTTGATTTCCACCGCCTTCTGCTTCGCCTTCTCTTCTTTGGTAAAGAAACAGCAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTGTTCAAGGAGGATGGTCAGGAGTATGCACAAGTTCTTAGAATGTTGGGAAATGGTCGGTGTGAGGCAATGTGCATCGATGGGACGAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAGAAGGTCTGGATTGCAGCTGGTGATATAATACTTGTCGGTCTTCGTGACTATCAGGATGATAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCGTATGGTGAGCTTCCTGAGAGCACCCGTCTCAACGAGGGTATCGCTGGTGGTATCGACGACGAGGATGATGGTGGGGCTGATGATTATCTTGAGTTTGAGGATGAAGATATTGATAAGATTTAG

Protein sequence

RNLGLQFLRFGLDFHRLLLRLLFFGKETANMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI

Homology

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BLAST of Spg001039 vs. NCBI nr
Match: KAG6570922.1 (hypothetical protein SDJN03_29837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322.0 bits (824), Expect = 3.2e-84
Identity = 164/182 (90.11%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 4   GLQFLRFGLDFHRLL----------LRLLFFGKETANMPKNKGKGGKNRKRGKNEADDEK 63
           GL FLR  LDFH+LL          LR LFFGKETANMPKNKGKGGKNRKRGKNEADDEK
Sbjct: 167 GLSFLRVRLDFHKLLLLPLLLPLLRLRFLFFGKETANMPKNKGKGGKNRKRGKNEADDEK 226

Query: 64  RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRD 123
           RELVFKEDGQEYAQVLRMLGNGRCEAMCIDG+KRLCHIRGKMHKKVWIAAGDIILVGLRD
Sbjct: 227 RELVFKEDGQEYAQVLRMLGNGRCEAMCIDGSKRLCHIRGKMHKKVWIAAGDIILVGLRD 286

Query: 124 YQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDID 176
           YQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIAGGIDDEDDGG DDYLEFEDEDID
Sbjct: 287 YQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGVDDYLEFEDEDID 346

[Close]

BLAST of Spg001039 vs. NCBI nr
Match: XP_022145199.1 (eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022956095.1 eukaryotic translation initiation factor 1A [Cucurbita moschata] >XP_022979975.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_022979976.1 eukaryotic translation initiation factor 1A [Cucurbita maxima] >XP_023527417.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_023527418.1 eukaryotic translation initiation factor 1A [Cucurbita pepo subsp. pepo] >XP_038902096.1 eukaryotic translation initiation factor 1A [Benincasa hispida] >XP_038902102.1 eukaryotic translation initiation factor 1A [Benincasa hispida])

HSP 1 Score: 292.7 bits (748), Expect = 2.1e-75
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           GGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

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BLAST of Spg001039 vs. NCBI nr
Match: XP_008457652.1 (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >XP_008457653.1 PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >KAA0045698.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 6.0e-75
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of Spg001039 vs. NCBI nr
Match: XP_022932723.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022972115.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023540729.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >XP_023540730.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.3 bits (739), Expect = 2.3e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           GGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

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BLAST of Spg001039 vs. NCBI nr
Match: XP_021280987.1 (eukaryotic translation initiation factor 1A [Herrania umbratica] >OMO64371.1 Translation initiation factor 1A (eIF-1A) [Corchorus capsularis] >OMP08574.1 Translation initiation factor 1A (eIF-1A) [Corchorus olitorius])

HSP 1 Score: 288.9 bits (738), Expect = 3.0e-74
Identity = 141/145 (97.24%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           GGID+EDDGGADDY+EFEDEDIDKI
Sbjct: 121 GGIDEEDDGGADDYIEFEDEDIDKI 145

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BLAST of Spg001039 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 263.1 bits (671), Expect = 2.3e-69
Identity = 134/146 (91.78%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGI- 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 151 AGGIDDEDDGGADDYLEFEDEDIDKI 176
           AGG+D+E D  A+DY+EFEDEDIDKI
Sbjct: 121 AGGLDEEMD-TANDYIEFEDEDIDKI 145

[Close]

BLAST of Spg001039 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 248.1 bits (632), Expect = 7.6e-65
Identity = 123/146 (84.25%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 151 GGIDDEDDG-GADDYLEFEDEDIDKI 176
             +D  ++G G  DY++FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of Spg001039 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-51
Identity = 106/145 (73.10%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Spg001039 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-51
Identity = 106/145 (73.10%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Spg001039 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-51
Identity = 106/145 (73.10%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
            G  D+D+   DD +  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of Spg001039 vs. ExPASy TrEMBL
Match: A0A6J1IS99 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111479507 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.9e-76
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           GGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Spg001039 vs. ExPASy TrEMBL
Match: A0A6J1GY26 (Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC111457892 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.9e-76
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           GGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Spg001039 vs. ExPASy TrEMBL
Match: A0A6J1CUI5 (Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LOC111014705 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.9e-76
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           GGIDDEDDGGADDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGADDYLEFEDEDIDKI 145

[Close]

BLAST of Spg001039 vs. ExPASy TrEMBL
Match: A0A1S3C6N4 (Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103497302 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.9e-75
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of Spg001039 vs. ExPASy TrEMBL
Match: A0A5A7TS70 (Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G002160 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.9e-75
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           GGIDDEDDGG DDYLEFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of Spg001039 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 270.8 bits (691), Expect = 7.8e-73
Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           G ++D+DD   DDY+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]

BLAST of Spg001039 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 265.4 bits (677), Expect = 3.3e-71
Identity = 129/145 (88.97%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           G +DD+DD   +DY+EFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of Spg001039 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 265.4 bits (677), Expect = 3.3e-71
Identity = 129/145 (88.97%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 151 GGIDDEDDGGADDYLEFEDEDIDKI 176
           G +DD+DD   +DY+EFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of Spg001039 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 245.4 bits (625), Expect = 3.5e-65
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 31  MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 90
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 91  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 150
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 151 GGIDDEDD 159
           G +DD+DD
Sbjct: 121 GDLDDDDD 128

The following BLAST results are available for this feature:

BLAST of Spg001039 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570922.1	3.2e-84	90.11	hypothetical protein SDJN03_29837, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145199.1	2.1e-75	100.00	eukaryotic translation initiation factor 1A [Momordica charantia] >XP_022956094....	[more]
XP_008457652.1	6.0e-75	99.31	PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >XP_008457...	[more]
XP_022932723.1	2.3e-74	98.62	eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022972...	[more]
XP_021280987.1	3.0e-74	97.24	eukaryotic translation initiation factor 1A [Herrania umbratica] >OMO64371.1 Tra...	[more]

BLAST of Spg001039 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	2.3e-69	91.78	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	7.6e-65	84.25	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	1.6e-51	73.10	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	1.6e-51	73.10	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	1.6e-51	73.10	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of Spg001039 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IS99	9.9e-76	100.00	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GY26	9.9e-76	100.00	Eukaryotic translation initiation factor 4C OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1CUI5	9.9e-76	100.00	Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3C6N4	2.9e-75	99.31	Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103497...	[more]
A0A5A7TS70	2.9e-75	99.31	Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Spg001039 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	7.8e-73	90.34	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	3.3e-71	88.97	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	3.3e-71	88.97	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	3.5e-65	92.19	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 165..175
None	No IPR available	GENE3D	2.40.50.140		coord: 32..175 e-value: 1.2E-57 score: 195.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52
None	No IPR available	PANTHER	PTHR21668:SF18	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE	coord: 31..175
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 58..140 e-value: 7.0E-49 score: 178.4
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAM	TIGR00523	TIGR00523	coord: 44..140 e-value: 1.4E-34 score: 116.0
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 31..175
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 46..140 score: 18.345238
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 63..139 e-value: 1.86033E-42 score: 134.573
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 62..123 e-value: 7.2E-22 score: 77.0
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 52..126 score: 31.623802
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 71..93
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 32..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001039.1	Spg001039.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding