Spg000658 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000658
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LA RNA-binding protein
Location	scaffold8: 47970822 .. 47971248 (-)
RNA-Seq Expression	Spg000658
Synteny	Spg000658

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGCATCCCTTGTTGGCCGAGTTTACCAGCTCCAGTCAACACTATCAGTTTTGAGCATCTTGTCTATTATACAGTCTGTATGCCACACAATATGATATGTTTTGAGCATCTTTTCTATTGGCTTGTAAGTCTCATATTGCACACTGTTCGTAGGTTCAAAGTAGTCGAGGTTTCAATCCTTTCTTCTGCTCTATCTTTGAGCCGATTGTCTTTACATTATATTGAGTATCTTTTGCAACCGGGTCGGATCATCTATTATGTATACTTGGCAGGGCTTTCCACCACTATCGAAGACAACGAGATCAGAAAGAGCCCCTAAGGAAACATCCAGAATTGGACAAGTTACTTAGGGAGGAATACCGTAGCTTGGATGATTTCCGTGCTAAAGAGAAGGCAGCAAATGCAAAAGAGGATGGGAATTAG

mRNA sequence

ATGCTTGCATCCCTTGTTGGCCGAGTTTACCAGCTCCAGTCAACACTATCAGTTTTGAGCATCTTGGCTTTCCACCACTATCGAAGACAACGAGATCAGAAAGAGCCCCTAAGGAAACATCCAGAATTGGACAAGTTACTTAGGGAGGAATACCGTAGCTTGGATGATTTCCGTGCTAAAGAGAAGGCAGCAAATGCAAAAGAGGATGGGAATTAG

Coding sequence (CDS)

ATGCTTGCATCCCTTGTTGGCCGAGTTTACCAGCTCCAGTCAACACTATCAGTTTTGAGCATCTTGGCTTTCCACCACTATCGAAGACAACGAGATCAGAAAGAGCCCCTAAGGAAACATCCAGAATTGGACAAGTTACTTAGGGAGGAATACCGTAGCTTGGATGATTTCCGTGCTAAAGAGAAGGCAGCAAATGCAAAAGAGGATGGGAATTAG

Protein sequence

MLASLVGRVYQLQSTLSVLSILAFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN

Homology

[Close]

BLAST of Spg000658 vs. NCBI nr
Match: KAE8649415.1 (hypothetical protein Csa_021682 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 3.9e-17
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAAN KEDGN
Sbjct: 641 AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANTKEDGN 689

[Close]

BLAST of Spg000658 vs. NCBI nr
Match: XP_004149652.1 (LOW QUALITY PROTEIN: la-related protein 1A [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 3.9e-17
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAAN KEDGN
Sbjct: 833 AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANTKEDGN 881

[Close]

BLAST of Spg000658 vs. NCBI nr
Match: XP_022153849.1 (la-related protein 1A [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPLRKHPEL+KLLREEYRSLDDFRAKEKAANAKEDG+
Sbjct: 832 AFHHYRRQRDQKEPLRKHPELEKLLREEYRSLDDFRAKEKAANAKEDGH 880

[Close]

BLAST of Spg000658 vs. NCBI nr
Match: KAG6605851.1 (La-related protein 1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPL+KHPELDKLLREEYRSLDDFRAKEKAA AKEDGN
Sbjct: 833 AFHHYRRQRDQKEPLKKHPELDKLLREEYRSLDDFRAKEKAATAKEDGN 881

[Close]

BLAST of Spg000658 vs. NCBI nr
Match: KAG7035798.1 (La-related protein 1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPL+KHPELDKLLREEYRSLDDFRAKEKAA AKEDGN
Sbjct: 668 AFHHYRRQRDQKEPLKKHPELDKLLREEYRSLDDFRAKEKAATAKEDGN 716

[Close]

BLAST of Spg000658 vs. ExPASy Swiss-Prot
Match: Q940X9 (La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.0e-09
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED 70
           AFHHY   R ++EP+ KHPEL+KLL+EE+RS+DDFRAKE   N KE+
Sbjct: 780 AFHHY---RGKEEPITKHPELEKLLKEEFRSIDDFRAKETITNQKEN 823

[Close]

BLAST of Spg000658 vs. ExPASy TrEMBL
Match: A0A0A0KWS8 (HTH La-type RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G269710 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAAN KEDGN
Sbjct: 833 AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANTKEDGN 881

[Close]

BLAST of Spg000658 vs. ExPASy TrEMBL
Match: A0A5D3DDZ4 (La-related protein 1A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00870 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.2e-17
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAA+ KEDGN
Sbjct: 833 AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAAHTKEDGN 881

[Close]

BLAST of Spg000658 vs. ExPASy TrEMBL
Match: A0A6J1DKA7 (la-related protein 1A OS=Momordica charantia OX=3673 GN=LOC111021265 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.2e-17
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPLRKHPEL+KLLREEYRSLDDFRAKEKAANAKEDG+
Sbjct: 832 AFHHYRRQRDQKEPLRKHPELEKLLREEYRSLDDFRAKEKAANAKEDGH 880

[Close]

BLAST of Spg000658 vs. ExPASy TrEMBL
Match: A0A1S3BNZ3 (la-related protein 1A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491617 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.2e-17
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAA+ KEDGN
Sbjct: 833 AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAAHTKEDGN 881

[Close]

BLAST of Spg000658 vs. ExPASy TrEMBL
Match: A0A6J1H0Y5 (la-related protein 1A OS=Cucurbita moschata OX=3662 GN=LOC111459403 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN 72
           AFHHYRRQRDQKEPL+KHPELDKLLREEYRSLDDFRAKEK+A AKEDGN
Sbjct: 833 AFHHYRRQRDQKEPLKKHPELDKLLREEYRSLDDFRAKEKSATAKEDGN 881

[Close]

BLAST of Spg000658 vs. TAIR 10
Match: AT5G21160.1 (LA RNA-binding protein )

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-10
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED 70
           AFHHY   R ++EP+ KHPEL+KLL+EE+RS+DDFRAKE   N KE+
Sbjct: 780 AFHHY---RGKEEPITKHPELEKLLKEEFRSIDDFRAKETITNQKEN 823

[Close]

BLAST of Spg000658 vs. TAIR 10
Match: AT5G21160.3 (LA RNA-binding protein )

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-10
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED 70
           AFHHY   R ++EP+ KHPEL+KLL+EE+RS+DDFRAKE   N KE+
Sbjct: 780 AFHHY---RGKEEPITKHPELEKLLKEEFRSIDDFRAKETITNQKEN 823

[Close]

BLAST of Spg000658 vs. TAIR 10
Match: AT5G21160.2 (LA RNA-binding protein )

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-10
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 23  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED 70
           AFHHY   R ++EP+ KHPEL+KLL+EE+RS+DDFRAKE   N KE+
Sbjct: 780 AFHHY---RGKEEPITKHPELEKLLKEEFRSIDDFRAKETITNQKEN 823

The following BLAST results are available for this feature:

BLAST of Spg000658 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649415.1	3.9e-17	97.96	hypothetical protein Csa_021682 [Cucumis sativus]	[more]
XP_004149652.1	3.9e-17	97.96	LOW QUALITY PROTEIN: la-related protein 1A [Cucumis sativus]	[more]
XP_022153849.1	1.5e-16	95.92	la-related protein 1A [Momordica charantia]	[more]
KAG6605851.1	1.5e-16	95.92	La-related protein 1A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7035798.1	1.5e-16	95.92	La-related protein 1A, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Spg000658 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X9	7.0e-09	63.83	La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1	[more]

BLAST of Spg000658 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWS8	1.9e-17	97.96	HTH La-type RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=...	[more]
A0A5D3DDZ4	7.2e-17	95.92	La-related protein 1A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1DKA7	7.2e-17	95.92	la-related protein 1A OS=Momordica charantia OX=3673 GN=LOC111021265 PE=4 SV=1	[more]
A0A1S3BNZ3	7.2e-17	95.92	la-related protein 1A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491617 PE=4 SV...	[more]
A0A6J1H0Y5	1.6e-16	93.88	la-related protein 1A OS=Cucurbita moschata OX=3662 GN=LOC111459403 PE=4 SV=1	[more]

BLAST of Spg000658 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21160.1	5.0e-10	63.83	LA RNA-binding protein	[more]
AT5G21160.3	5.0e-10	63.83	LA RNA-binding protein	[more]
AT5G21160.2	5.0e-10	63.83	LA RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 23..66
None	No IPR available	PANTHER	PTHR22792:SF101	LA-RELATED PROTEIN 1A	coord: 23..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000658.1	Spg000658.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding