Spg000645 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000645
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	scaffold8: 38025793 .. 38030461 (-)
RNA-Seq Expression	Spg000645
Synteny	Spg000645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAAGCGGCGCGAAAACGAAGAAGAAGAAAAATGGAGGCTACCGCGAAAACGAAGAAGAAGAAAAATGGAGGCACTGGCGTGATGGCGTCTGGCGTGAAAATGAAGAAGAAGGAAAATGGAAGCAGGCGGCGCTAGGGATGTTGAAAAAGACGGTAAGTTGTGTGCCCTAAAAATAATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTAATATTCGTCGGTTCGGTTCGGGTTGAACTGAAATTAAAGTTCTTGAACCCACTACCCGAACCGAACCAGCCGGTTCTCATAATTTTCAACCCAACCCAACCCAAAATTCATTCTAACCCAACCTAATCCTTATAATTTGGGTTGGGTTGTCCGGGTTTTTCGGGTCATCGGGTTCGATGAACACCCCTATTAAAAAGTGTTTCAATTCAAACCCTCTTATTAGTTGTTGTTTGAAAGATGGTTAATATATATATATATTCTCATGTGTTTAATGGATAGTAAAACATATATGTGGTACAAAATTGATGAGATTTTAGAGAAAAATGACATTAGAGCTAAATTTTTGTTGAAAATTGTGAATTTTTATAAGGTTATTCAATAGTCAATTTGAACATTGATCAAATTTAATTTTGTGTAAAGCTTAGTTTTATTGAAAATAGTGATTTTATTGAGTTTTTTACCATTTAAAAAAAAATTAGTGGGTGAATTAACAAAAATTGACTAGAAGATAAAAATTGAAACAATTGTCTAAATATAGGGTCCAATTTGATGAACCTGAAAGCTTGAAGTTGAAATTCATACAACTTGACAAGTTTATGAGTAAAAACTGTTTCTTTCCTTCAATAATAAAAATATTTAGAAACAAAAACCACAAAGTTTACCTTAAAAATAATAGGTTGAATTATAAAATTGATCCCTATGTTTCAAATAAAGTTAGAATTTAGTTTCTATAGTTTTGAAAGTTAGAATTTAGTCTTTATGGTAAGTTAGAATTCTTCTCTATGGTTTGACAAAACTATTTATGAGGGTTTCATCAAACCATACACATCAATTCCATCTTTTAAGACCATAACGACTAAATTCTAACTTTCTTCGAACCATAGATACCAAATTTGTAATTTAACCAAAATAATATCATTTCATCTTCACCATTAACACATTAAACAATATTGTTTCCCTATTTCATAATTAGCATGAAAGTGTTGATTTTGTCATCCAAAGAACCAAACAAATCCTAATACCAACATTTTTTTTTTCTATATATAATTATCATGGAAGGTTGGCCAGATGCTCCTCAAAAGTCAAATCCTATTTGATTATGCATTTTTTTTTTTTTGAGAAAATATTTGATTATGCAATTTTGACTGTTTATGAATTGGAAATGACATTATTAACTTTAATATTTCATTAATTCACAATTTAATACACAGTTTTGAGATATGACATCAAACAGATAAGTAGGTAAGTAGCAAGCAAAATTGGCTTCCATTTCATTGTTTTTCAACAACTATTAGATTATATAATAAATGCATAACTAGCGTCATAGAATAAATACTACTTTTTTTTTTTCTTGTGACACAGTCAATTATTTCAATACAATAATAGTTCTTTTTCCTTCTATTTTTCATTTTCATAAATTGGGTTTAAAGTCCAATTATGTGCGAGTGACCATGAATCAATTTTGAAAGGGTCAATATTCAATTACCTAACCATGATATGTATATGTGAAAATTTTGATAGCAATACAACAATACTAAGATAATGTTAATATGAGCACAGCTCAACTAACATATAAAGTTTGTATTAGTGACCAAGAAGTTAGTGGTTCAAACCTCCCACCCCCATACGTTGTCAAAAAAAAAAAAACGTACTAAGAAAACCGTTGAAATCTAAACAACGTGTGGTAAGGATTAACAAAATTGTTAAAGATTTTGCATATTACATGAAGAAACATATGATTATTTTCATATCGAAGCATATGCTCGAATGTAGATGTAAGATTCATTATACACGTACCTATTTCATATTTGGATACGTGATGGGGTCGAAATATAATTTTAATTTAAAGTAAATTACAAATTTGGTCCTATGATTTGGAGAAAGTTAGAATTTAGTCCTGTAATTTCAAGAGACTATCCAAGACATGCTGATCGTGCGGATTTTTGGAAGGAACTTCACGACTTGGCTGGTTTAGGTGGTGATAATTGGATTCTTGGAGGAGATTTTAATGTCACACGTTGGTCATGGGAAAAATCTCATGGCCGGCCAGTGACTAGGAGTATGCGCCTTTTCAACCAATGGATTGCAGATTATCATCTTCTAGACACTCCTTTGCAAAATGGTTGCTACACATGGTCCAGTTTTGGTGAAAATCATTATTGCTCTTTGATTGATCGTTTTTTTGATGACAGATGCTTGTCACAATAAATTTGGTGTAGCTCATTTTCTTCGCCTTGATAGGGTTACATCGGATCATTACCCTTGTACTCTATCTTTTGGGGATCTCTCTTGGGGCCCATGCCCCTTTAGGTTTGAGAATTCTTGGCTGAAAATTGACTCTTTTCGTGGTCTTATGGATAATTGGTGGCCTCAAAACACCATTCAGGGATGGCCAGGTCATGGTTTCATGATGAAGCTTAAAGGTTTGAAATCTGAACTTCGAAAATGGAATTTATCTCAACGCTTATCTGTTGCACAACTTCCATCTCTAGTTACACAGTTGAAATTGTTGGATGATACAGAAGACAGGGTTCCATTATCTATGGATCAAATATCTTCTAGAAGATTATTAAGGGAACAAATTGAGGATTTGTCAGCTCAAGAACACATTTATTGGCATCAACGCTGTAAGTTGAACTGGTTAAAAGAAGGGGATGAAAGTACAAAATTTTTCCATAGAATCATGGCTGCCCGTAAACGAAAGAATTTCATTTCAGAGATATTGTCTAGACAAGGAAATAGTCTCTTTTCAGATAATGATATAGAAGCGGAATTCCTTGGCTTTTATCATACATTGTTTACCAAGGATCGTGGCACTAGATTTCTACCTACTAATGTTGATTGGTGTCCAATTAATGAATCGCAATCGCGGGGTTTGGAGGCGGTTTTTACTGAAGATGAGGTTCATCAAGCGGTAAAATCTCTAGGCATGAGTAAATCTCCAGGCCCAGATGGATTTACAGCTGAATTCTTCAAATTCTCATGGAATACCATCAAACGTGATATTATGACTATGGTGGAGGATTTCTATAATACAGGTATTATCAATGTCTCCCTGAATGAAACTTATATCTGCCTTATTCCAAAGAAATTAGACTCTAAATCAGTCTCAGACTTTCGTCCTATCAGTCTAATTCCTTGTGCTTACAAGATTATAGCTCGAGTTTTGTCCAACAGATTGAAAATGGTATTGTCATCCACTATTGCGGAAAATCAAATGGCTTTTGTGGCTAACAGACAAATTCTAGATGCTTCCCTTATAGCAAATGAGTTGATTGATGATTGGAATTTATCTTGTAAGAAAGGCGTGGTGATTAAATTAGATCTTGAAAAGGCTTTTGATAAAGTTGATTGGGATTTTCTGGATGCTATTCTTCAGGCCAAGGGTTTTGGTTCGGTATGGAGGAAATGGATTTATGGATGCCTTTCTAGTGTTAATTACTCCATTAATATCAATGGAAAACCAAGAGGCAAGATCATTCCCTCTCGTGGCATTCGTCAAGGGGACCCCCTTTCACCTTTCCTTTTCATCTTGGTGTCTGATTGTCTAAGTCGCTTATTATCTCACAGTGCTAATATGGGTCGAATTGTTTCTCATCCGATTGGAAATTCACAGCTTCATGTGAATCATTTACAATTCGCTGATGATACTTTATTATTCTCCATCTTTTGTAAGGATGCATTGGTTAACTTGTTCAATGTGGTTAAAATTTTTGAGTTGGCTTCTGGGTTGAATATTAACTATTCCAAAAGTGAGGTTCTGGGAATTCATTTAGAGGATTCAGAATTGGAATGGCTGACAACAACGTTTGGCTGTAAACAAGGGATTTGGCCTTCCACTTACCTTGGTTTACCTTTGGGAGGCAATGCAAAAACTATATTTTTTTGGCAGCCAGTGATTGAAAGAATCCAACATAAGCTTCATAGTTGGAAATATTCATATATCTCGAAAGGTGGTAGACATACTCTTACTCAAGCAGTTCTCTCTAGTATGCCAATTTATTATTTATCCTTATTCAAATTGCCAAGTAAGGTTGCAAGGTCTCTTGATAAGCTGCTTCGTGATTTCTTTTGGGAAGGATCTAGAGGTGATGGTGGTATGCATAATATTAATTGGGCAACAATACAACTTCCACATTTGTTGGGGGGTATTGGTATTGGTAATTTTCAGATCAATCGCAATCTTGCTCTCCTAGCAAAGTGGATTTGGAGATTTTTACATGAGGAAAATTCTCTATGGCATAAACTGATTGTTGCTAAGTATTATAAATATGATTTGATTAGAATTTGGCCTAGCAGTATTCAAAGAAGTTCTCACAAATCTCCTTGGAGATTCATTTCTTCTACTATTGACCTTGTATCTTCCCGTATTAAAAGATCTTTGGGTAATGGTCTTGCTACTTCATTCTGGCATGATTCGTGGTTAA

mRNA sequence

ATGGAGGCAAGCGGCGCGAAAACGAAGAAGAAGAAAAATGGAGGCTACCGCGAAAACGAAGAAGAAGAAAAATGGAGGCACTGGCGTGATGGCGTCTGGCGTGAAAATGAAGAAGAAGGAAAATGGAAGCAGGCGGCGCTAGGGATGTTGAAAAAGACGTTAGAATTTAGTCCTGTAATTTCAAGAGACTATCCAAGACATGCTGATCGTGCGGATTTTTGGAAGGAACTTCACGACTTGGCTGGTTTAGGTGGTGATAATTGGATTCTTGGAGGAGATTTTAATGTCACACGTTGGTCATGGGAAAAATCTCATGGCCGGCCAGTGACTAGGAATGCTTGTCACAATAAATTTGGTGTAGCTCATTTTCTTCGCCTTGATAGGGTTACATCGGATCATTACCCTTGTACTCTATCTTTTGGGGATCTCTCTTGGGGCCCATGCCCCTTTAGGTTTGAGAATTCTTGGCTGAAAATTGACTCTTTTCGTGGTCTTATGGATAATTGGTGGCCTCAAAACACCATTCAGGGATGGCCAGGTCATGGTTTCATGATGAAGCTTAAAGGTTTGAAATCTGAACTTCGAAAATGGAATTTATCTCAACGCTTATCTGTTGCACAACTTCCATCTCTAGTTACACAGTTGAAATTGTTGGATGATACAGAAGACAGGGTTCCATTATCTATGGATCAAATATCTTCTAGAAGATTATTAAGGGAACAAATTGAGGATTTGTCAGCTCAAGAACACATTTATTGGCATCAACGCTGTGGTAGACATACTCTTACTCAAGCAGTTCTCTCTAGTATGCCAATTTATTATTTATCCTTATTCAAATTGCCAAGTAAGGTTGCAAGGTCTCTTGATAAGCTGCTTCGTGATTTCTTTTGGGAAGGATCTAGAGGTGATGGTGAATTTGGCCTAGCAGTATTCAAAGAAGTTCTCACAAATCTCCTTGGAGATTCATTTCTTCTACTATTGACCTTGTATCTTCCCGTATTAAAAGATCTTTGGGTAATGGTCTTGCTACTTCATTCTGGCATGATTCGTGGTTAA

Coding sequence (CDS)

ATGGAGGCAAGCGGCGCGAAAACGAAGAAGAAGAAAAATGGAGGCTACCGCGAAAACGAAGAAGAAGAAAAATGGAGGCACTGGCGTGATGGCGTCTGGCGTGAAAATGAAGAAGAAGGAAAATGGAAGCAGGCGGCGCTAGGGATGTTGAAAAAGACGTTAGAATTTAGTCCTGTAATTTCAAGAGACTATCCAAGACATGCTGATCGTGCGGATTTTTGGAAGGAACTTCACGACTTGGCTGGTTTAGGTGGTGATAATTGGATTCTTGGAGGAGATTTTAATGTCACACGTTGGTCATGGGAAAAATCTCATGGCCGGCCAGTGACTAGGAATGCTTGTCACAATAAATTTGGTGTAGCTCATTTTCTTCGCCTTGATAGGGTTACATCGGATCATTACCCTTGTACTCTATCTTTTGGGGATCTCTCTTGGGGCCCATGCCCCTTTAGGTTTGAGAATTCTTGGCTGAAAATTGACTCTTTTCGTGGTCTTATGGATAATTGGTGGCCTCAAAACACCATTCAGGGATGGCCAGGTCATGGTTTCATGATGAAGCTTAAAGGTTTGAAATCTGAACTTCGAAAATGGAATTTATCTCAACGCTTATCTGTTGCACAACTTCCATCTCTAGTTACACAGTTGAAATTGTTGGATGATACAGAAGACAGGGTTCCATTATCTATGGATCAAATATCTTCTAGAAGATTATTAAGGGAACAAATTGAGGATTTGTCAGCTCAAGAACACATTTATTGGCATCAACGCTGTGGTAGACATACTCTTACTCAAGCAGTTCTCTCTAGTATGCCAATTTATTATTTATCCTTATTCAAATTGCCAAGTAAGGTTGCAAGGTCTCTTGATAAGCTGCTTCGTGATTTCTTTTGGGAAGGATCTAGAGGTGATGGTGAATTTGGCCTAGCAGTATTCAAAGAAGTTCTCACAAATCTCCTTGGAGATTCATTTCTTCTACTATTGACCTTGTATCTTCCCGTATTAAAAGATCTTTGGGTAATGGTCTTGCTACTTCATTCTGGCATGATTCGTGGTTAA

Protein sequence

MEASGAKTKKKKNGGYRENEEEEKWRHWRDGVWRENEEEGKWKQAALGMLKKTLEFSPVISRDYPRHADRADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQAVLSSMPIYYLSLFKLPSKVARSLDKLLRDFFWEGSRGDGEFGLAVFKEVLTNLLGDSFLLLLTLYLPVLKDLWVMVLLLHSGMIRG

Homology

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BLAST of Spg000645 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-38
Identity = 87/234 (37.18%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 73  FWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTR--------------------- 132
           FW+EL DL+ L  ++WIL GDFNVTRWSWEKS+GRP+T+                     
Sbjct: 120 FWQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTN 179

Query: 133 --------------------NACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFR 192
                               N C +K G+    R+ R TSDH+P  L FG  +WG  PFR
Sbjct: 180 GQHTWSRNTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTPFR 239

Query: 193 FENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQ-RLSVAQLPS 252
           FEN WL   +F+  ++ WW    + GWPGHG MMKLK LK  ++ W     R   +Q   
Sbjct: 240 FENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMMKLKSLKYAIKLWITEHFRCIHSQKED 299

Query: 253 LVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQ 265
           L   +  LDD E   P++ DQ  +R   +E +  + A+E  +W QRC +  L +
Sbjct: 300 LTNLMNSLDDLEGSQPVTPDQSRARIQAKEDLLSVVAKEEAFWRQRCKQKWLCE 353

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BLAST of Spg000645 vs. NCBI nr
Match: KAE8647279.1 (hypothetical protein Csa_002929 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 6.6e-33
Identity = 65/127 (51.18%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 75  KELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHY 134
           +EL DL GLGGD+WI GGD N+TRWSWEKSH + +  N       +A++   D VT DH+
Sbjct: 83  EELDDLVGLGGDSWINGGDLNITRWSWEKSHDQFIPNNMQLFNQWIANYHLRDIVTLDHF 142

Query: 135 PCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSEL 194
           P  +   D+ WGPCPFR E SWL    F  L++ WW  N + GWPGHG MMKLK L    
Sbjct: 143 PPAMIACDIDWGPCPFRIEKSWLSTPLFLPLVETWWTNNRVAGWPGHGLMMKLKALIMFF 202

Query: 195 RKWNLSQ 202
           R WN +Q
Sbjct: 203 RSWNNNQ 209

[Close]

BLAST of Spg000645 vs. NCBI nr
Match: RVW83303.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 145.6 bits (366), Expect = 8.1e-31
Identity = 84/255 (32.94%), Postives = 124/255 (48.63%), Query Frame = 0


Query: 70   RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRV 129
            R DFW EL DL GL    W +GGDFNV R   EK     +T N       +     L R 
Sbjct: 819  REDFWLELQDLHGLTFPRWCVGGDFNVIRRISEKMGDSRLTVNMRRFDEFIRESEALPRW 878

Query: 130  TSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKG 189
            TSDH P  L      WGP PFRFEN WL    F+    +WW + T++GW GH FM KLK 
Sbjct: 879  TSDHSPICLETNPFMWGPTPFRFENMWLLHPEFKEKFRDWWQECTVEGWEGHKFMRKLKF 938

Query: 190  LKSELRKWNLSQRLSVAQLPS-LVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQ 249
            +KS+L++WN      + +    ++T L  +D  E    L+++ +S R L R+++EDL  +
Sbjct: 939  IKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVSERILRRKELEDLLLK 998

Query: 250  EHIYWHQRCGRHTLTQAVLSSMPIYYLSLFKLPSKVARSLDKLLRDFFWEGSRGDGEFGL 309
            E + W Q+     + +   +S   + ++  +   K  +SL            RG+    +
Sbjct: 999  EEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSL---------ISERGETLNNI 1058

Query: 310  AVFKEVLTNLLGDSF 324
             V  E + N  G+ +
Sbjct: 1059 EVISEEIVNFFGNLY 1064

[Close]

BLAST of Spg000645 vs. NCBI nr
Match: TYK17996.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 9.9e-29
Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 138 LSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKW 197
           ++ GD+  GPCPFRFENSWL   SF  L++ WW  N + GWP HG MMKLK L+  LR W
Sbjct: 1   MTAGDIDRGPCPFRFENSWLSTPSFWPLVETWWTNNRVAGWPRHGLMMKLKALQMFLRSW 60

Query: 198 NLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQR 257
           N +Q     +LPSL++QL+ LD+  +R+ LS++Q+S+  LLREQIE L+AQEHI W  R
Sbjct: 61  N-NQHREATKLPSLISQLRELDNIGNRIQLSVEQLSTSCLLREQIEQLTAQEHIQWRLR 118

[Close]

BLAST of Spg000645 vs. NCBI nr
Match: RVW50795.1 (hypothetical protein CK203_076874 [Vitis vinifera])

HSP 1 Score: 137.1 bits (344), Expect = 2.9e-28
Identity = 75/189 (39.68%), Postives = 100/189 (52.91%), Query Frame = 0


Query: 70  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLR-LDR 129
           R DFW EL DL GL    W +GGDF+V R   +K     +T N     F        L R
Sbjct: 101 RKDFWLELQDLYGLTFPMWCVGGDFHVIRRISKKLGDSRLTFNMRLFLFARGCLQEALPR 160

Query: 130 VTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLK 189
            TSDH P  L    L WGP PFRFEN WL    F+    +WW   T++GW GH FM KLK
Sbjct: 161 WTSDHNPICLETNPLKWGPTPFRFENMWLLHHEFKEKFSDWWQGCTVEGWEGHKFMRKLK 220

Query: 190 GLKSELRKWNLSQRLSVAQLPSLV-TQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSA 249
            +KS+L+ WN      + +   L+ + L  +D  E    L++D +S R L R ++EDL  
Sbjct: 221 FVKSKLKDWNKVAFGDLREKKKLILSDLARIDLIEQEGNLNLDLVSERTLRRRELEDLLL 280

Query: 250 QEHIYWHQR 257
           +E ++W Q+
Sbjct: 281 KEEVHWRQK 289

[Close]

BLAST of Spg000645 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 8.8e-04
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 258 GRHTLTQAVLSSMPIYYLSLFKLPSKVARSLDKLLRDFFW 298
           GR TLT+AVLSSMP++ +S   LP  +   LD+L R F W
Sbjct: 36  GRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75

[Close]

BLAST of Spg000645 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.7e-39
Identity = 87/234 (37.18%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 73  FWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTR--------------------- 132
           FW+EL DL+ L  ++WIL GDFNVTRWSWEKS+GRP+T+                     
Sbjct: 120 FWQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTN 179

Query: 133 --------------------NACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFR 192
                               N C +K G+    R+ R TSDH+P  L FG  +WG  PFR
Sbjct: 180 GQHTWSRNTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTPFR 239

Query: 193 FENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQ-RLSVAQLPS 252
           FEN WL   +F+  ++ WW    + GWPGHG MMKLK LK  ++ W     R   +Q   
Sbjct: 240 FENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMMKLKSLKYAIKLWITEHFRCIHSQKED 299

Query: 253 LVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQ 265
           L   +  LDD E   P++ DQ  +R   +E +  + A+E  +W QRC +  L +
Sbjct: 300 LTNLMNSLDDLEGSQPVTPDQSRARIQAKEDLLSVVAKEEAFWRQRCKQKWLCE 353

[Close]

BLAST of Spg000645 vs. ExPASy TrEMBL
Match: A0A438HFR2 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_207 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-31
Identity = 84/255 (32.94%), Postives = 124/255 (48.63%), Query Frame = 0


Query: 70   RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRV 129
            R DFW EL DL GL    W +GGDFNV R   EK     +T N       +     L R 
Sbjct: 819  REDFWLELQDLHGLTFPRWCVGGDFNVIRRISEKMGDSRLTVNMRRFDEFIRESEALPRW 878

Query: 130  TSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKG 189
            TSDH P  L      WGP PFRFEN WL    F+    +WW + T++GW GH FM KLK 
Sbjct: 879  TSDHSPICLETNPFMWGPTPFRFENMWLLHPEFKEKFRDWWQECTVEGWEGHKFMRKLKF 938

Query: 190  LKSELRKWNLSQRLSVAQLPS-LVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQ 249
            +KS+L++WN      + +    ++T L  +D  E    L+++ +S R L R+++EDL  +
Sbjct: 939  IKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVSERILRRKELEDLLLK 998

Query: 250  EHIYWHQRCGRHTLTQAVLSSMPIYYLSLFKLPSKVARSLDKLLRDFFWEGSRGDGEFGL 309
            E + W Q+     + +   +S   + ++  +   K  +SL            RG+    +
Sbjct: 999  EEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSL---------ISERGETLNNI 1058

Query: 310  AVFKEVLTNLLGDSF 324
             V  E + N  G+ +
Sbjct: 1059 EVISEEIVNFFGNLY 1064

[Close]

BLAST of Spg000645 vs. ExPASy TrEMBL
Match: A0A0A0KDG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G400290 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.7e-29
Identity = 78/212 (36.79%), Postives = 104/212 (49.06%), Query Frame = 0


Query: 75  KELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHY 134
           +EL DL GLGGD+WI GGD N+TRWSWEKSH + +  N       +A++   D VT DH+
Sbjct: 83  EELDDLVGLGGDSWINGGDLNITRWSWEKSHDQFIPNNMQLFNQWIANYHLRDIVTLDHF 142

Query: 135 PCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSEL 194
           P  +   D+ WGPCPFR E SWL    F  L++ WW  N                     
Sbjct: 143 PPAMIACDIDWGPCPFRIEKSWLSTPLFLPLVETWWTNN--------------------- 202

Query: 195 RKWNLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWH 254
                              +L+ LD+  ++  L ++Q+S+ R  REQIE L+ QEHI W 
Sbjct: 203 -------------------RLRELDNIGNKTQLFVEQLSTSRSSREQIEQLTTQEHIQWQ 254

Query: 255 QRC-------GRHTLT-QAVLSSMPIYYLSLF 279
           QRC       GR  LT   + S    +Y +LF
Sbjct: 263 QRCKLKWFTEGRSILTMDDIESEFCDFYKNLF 254

[Close]

BLAST of Spg000645 vs. ExPASy TrEMBL
Match: A0A5D3D3Q8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003050 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.8e-29
Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 138 LSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKW 197
           ++ GD+  GPCPFRFENSWL   SF  L++ WW  N + GWP HG MMKLK L+  LR W
Sbjct: 1   MTAGDIDRGPCPFRFENSWLSTPSFWPLVETWWTNNRVAGWPRHGLMMKLKALQMFLRSW 60

Query: 198 NLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQR 257
           N +Q     +LPSL++QL+ LD+  +R+ LS++Q+S+  LLREQIE L+AQEHI W  R
Sbjct: 61  N-NQHREATKLPSLISQLRELDNIGNRIQLSVEQLSTSCLLREQIEQLTAQEHIQWRLR 118

[Close]

BLAST of Spg000645 vs. ExPASy TrEMBL
Match: A0A438ET41 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_076874 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-28
Identity = 75/189 (39.68%), Postives = 100/189 (52.91%), Query Frame = 0


Query: 70  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLR-LDR 129
           R DFW EL DL GL    W +GGDF+V R   +K     +T N     F        L R
Sbjct: 101 RKDFWLELQDLYGLTFPMWCVGGDFHVIRRISKKLGDSRLTFNMRLFLFARGCLQEALPR 160

Query: 130 VTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLK 189
            TSDH P  L    L WGP PFRFEN WL    F+    +WW   T++GW GH FM KLK
Sbjct: 161 WTSDHNPICLETNPLKWGPTPFRFENMWLLHHEFKEKFSDWWQGCTVEGWEGHKFMRKLK 220

Query: 190 GLKSELRKWNLSQRLSVAQLPSLV-TQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSA 249
            +KS+L+ WN      + +   L+ + L  +D  E    L++D +S R L R ++EDL  
Sbjct: 221 FVKSKLKDWNKVAFGDLREKKKLILSDLARIDLIEQEGNLNLDLVSERTLRRRELEDLLL 280

Query: 250 QEHIYWHQR 257
           +E ++W Q+
Sbjct: 281 KEEVHWRQK 289

The following BLAST results are available for this feature:

BLAST of Spg000645 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158956.1	1.8e-38	37.18	uncharacterized protein LOC111025405 [Momordica charantia]	[more]
KAE8647279.1	6.6e-33	51.18	hypothetical protein Csa_002929 [Cucumis sativus]	[more]
RVW83303.1	8.1e-31	32.94	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
TYK17996.1	9.9e-29	53.78	reverse transcriptase [Cucumis melo var. makuwa]	[more]
RVW50795.1	2.9e-28	39.68	hypothetical protein CK203_076874 [Vitis vinifera]	[more]

BLAST of Spg000645 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	8.8e-04	52.50	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Spg000645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2G6	8.7e-39	37.18	uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A438HFR2	3.9e-31	32.94	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A0A0KDG4	3.7e-29	36.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G400290 PE=4 SV=1	[more]
A0A5D3D3Q8	4.8e-29	53.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A438ET41	1.4e-28	39.68	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_076874 PE=4 SV=1	[more]

BLAST of Spg000645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR33710:SF32	SUBFAMILY NOT NAMED	coord: 124..239
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 124..239
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 63..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000645.1	Spg000645.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0003824	catalytic activity