Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAACTGTTTGAGGAGCAACAGAGTGATGGCGCAAGACGAGCCTTATTTGTTGCCTTCGCTGGCTAATTCGCCTCCGGCGGAAGCTAAGAAGTTTGAGGATAAACCGGCGGGCGGCGGATCGGTGGATGGTTCATTCACTGCTATGGGGAACTGTTTGAAGAGTAACGAAGTGATGGCGCAGGATGAGCCTTATTTGCCTTCGCCTAATTCGACGGAAGCGATGAAAGTAGAGGATAAACCGGCGGGCGGATCGGCGATGGCGAAGCCGAGAAGCGGTGCGCGAGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGATGAGAACTCCGGCGAAGGAGATCAAGTGATCGGCAGAAGTGGCGGCGATGGAGGAGACGGAGACGGAGCCGGAGGAGGAGTATTGAGGATTAAGGTGGTGGTGTCTCAGAAAGAGTTGAAGCGGATATTGAAGGAAAGAGAGAACAATTCCAGTACCTTGGAGGAATTGATTGCTGAATTGAAGGTGAAAGGTAGGACGAGTACGATTTCAGATGCTAGAACCGACGAAGTTGAGGATGAAAATGGAAGCTACAGGCCGGCTCTGAAAAGTATTCCTGAAGATCTCCATTAA
mRNA sequence
ATGGGGAACTGTTTGAGGAGCAACAGAGTGATGGCGCAAGACGAGCCTTATTTGTTGCCTTCGCTGGCTAATTCGCCTCCGGCGGAAGCTAAGAAGTTTGAGGATAAACCGGCGGGCGGCGGATCGGTGGATGGTTCATTCACTGCTATGGGGAACTGTTTGAAGAGTAACGAAGTGATGGCGCAGGATGAGCCTTATTTGCCTTCGCCTAATTCGACGGAAGCGATGAAAGTAGAGGATAAACCGGCGGGCGGATCGGCGATGGCGAAGCCGAGAAGCGGTGCGCGAGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGATGAGAACTCCGGCGAAGGAGATCAAGTGATCGGCAGAAGTGGCGGCGATGGAGGAGACGGAGACGGAGCCGGAGGAGGAGTATTGAGGATTAAGGTGGTGGTGTCTCAGAAAGAGTTGAAGCGGATATTGAAGGAAAGAGAGAACAATTCCAGTACCTTGGAGGAATTGATTGCTGAATTGAAGGTGAAAGGTAGGACGAGTACGATTTCAGATGCTAGAACCGACGAAGTTGAGGATGAAAATGGAAGCTACAGGCCGGCTCTGAAAAGTATTCCTGAAGATCTCCATTAA
Coding sequence (CDS)
ATGGGGAACTGTTTGAGGAGCAACAGAGTGATGGCGCAAGACGAGCCTTATTTGTTGCCTTCGCTGGCTAATTCGCCTCCGGCGGAAGCTAAGAAGTTTGAGGATAAACCGGCGGGCGGCGGATCGGTGGATGGTTCATTCACTGCTATGGGGAACTGTTTGAAGAGTAACGAAGTGATGGCGCAGGATGAGCCTTATTTGCCTTCGCCTAATTCGACGGAAGCGATGAAAGTAGAGGATAAACCGGCGGGCGGATCGGCGATGGCGAAGCCGAGAAGCGGTGCGCGAGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGATGAGAACTCCGGCGAAGGAGATCAAGTGATCGGCAGAAGTGGCGGCGATGGAGGAGACGGAGACGGAGCCGGAGGAGGAGTATTGAGGATTAAGGTGGTGGTGTCTCAGAAAGAGTTGAAGCGGATATTGAAGGAAAGAGAGAACAATTCCAGTACCTTGGAGGAATTGATTGCTGAATTGAAGGTGAAAGGTAGGACGAGTACGATTTCAGATGCTAGAACCGACGAAGTTGAGGATGAAAATGGAAGCTACAGGCCGGCTCTGAAAAGTATTCCTGAAGATCTCCATTAA
Protein sequence
MGNCLRSNRVMAQDEPYLLPSLANSPPAEAKKFEDKPAGGGSVDGSFTAMGNCLKSNEVMAQDEPYLPSPNSTEAMKVEDKPAGGSAMAKPRSGARGKKVVRFKLQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSSTLEELIAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPEDLH
Homology
BLAST of Spg000573 vs. NCBI nr
Match:
XP_022140639.1 (uncharacterized protein LOC111011249 [Momordica charantia])
HSP 1 Score: 170.2 bits (430), Expect = 1.8e-38
Identity = 106/163 (65.03%), Postives = 119/163 (73.01%), Query Frame = 0
Query: 50 MGNCLKSNEVMAQDEPYLPSPNS--TEA-MKVEDKPAGGSAMAKP-----RSGARGKKVV 109
MGNCL++N VMAQDE PSPNS TE KVEDKPA GSA+A+P R AR KKVV
Sbjct: 43 MGNCLRNNRVMAQDEACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARIAARRKKVV 102
Query: 110 RFKLQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSSTL 169
RF+ +EDE S G GGGVLRIKVVVSQKELK+ILK+RE+NSSTL
Sbjct: 103 RFQQREDEIS------------------GGGGGVLRIKVVVSQKELKQILKDRESNSSTL 162
Query: 170 EELIAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPEDLH 205
EEL+AELK+KGR TISDAR D EDENGS+RPAL+SIPEDLH
Sbjct: 163 EELLAELKMKGR--TISDARADNEEDENGSWRPALESIPEDLH 185
BLAST of Spg000573 vs. NCBI nr
Match:
KAG6570883.1 (hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 167.2 bits (422), Expect = 1.5e-37
Identity = 110/164 (67.07%), Postives = 122/164 (74.39%), Query Frame = 0
Query: 50 MGN-CLKSNEVMAQDEPYLPSPNS--TEAMKVEDKPAGGSAMAKP-----RSG-ARGKKV 109
MGN C KSN+VMAQDE L NS EA KVE+KP GSAMAKP RSG A GKKV
Sbjct: 1 MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKKV 60
Query: 110 VRFKLQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSST 169
VRFKLQE++ + SGG GGDGD A GVLRIKVV+SQ+ELK+ILKE EN+S +
Sbjct: 61 VRFKLQEEDEN---------SGGSGGDGDRA--GVLRIKVVMSQRELKQILKENENSSRS 120
Query: 170 LEELIAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPEDLH 205
LEELIAE KVKGRT T+SDA TDEVEDENGS RPAL+ IPE LH
Sbjct: 121 LEELIAEFKVKGRT-TVSDAITDEVEDENGSRRPALECIPEGLH 152
BLAST of Spg000573 vs. NCBI nr
Match:
XP_038902397.1 (uncharacterized protein LOC120089037 [Benincasa hispida])
HSP 1 Score: 151.4 bits (381), Expect = 8.6e-33
Identity = 95/155 (61.29%), Postives = 106/155 (68.39%), Query Frame = 0
Query: 52 NCLKSNEVMAQDEPYLPSPNSTEAMKVEDKPAGGSAMAKP-----RSGARGKKVVRFKLQ 111
NC KSN+VMAQDEP P EA KVE+KP GSAMAKP R+G KKVVRFKLQ
Sbjct: 4 NCFKSNKVMAQDEPEDLLP-PIEAKKVEEKPRPGSAMAKPKTAEARTGGASKKVVRFKLQ 63
Query: 112 EDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSSTLEELIA 171
E+E GD GGVLRIKVV+SQKELK++LK+RENNS TLEELI
Sbjct: 64 EEEEKNSGD-----------------GGVLRIKVVMSQKELKQMLKDRENNSCTLEELIT 123
Query: 172 ELKVKGRTSTISDARTDEVEDENGSYRPALKSIPE 202
ELKVKGRT TISD R D VEDENG ++P L+ IPE
Sbjct: 124 ELKVKGRT-TISDGRIDAVEDENGRWKPDLEGIPE 139
BLAST of Spg000573 vs. NCBI nr
Match:
KGN63254.1 (hypothetical protein Csa_022493 [Cucumis sativus])
HSP 1 Score: 137.5 bits (345), Expect = 1.3e-28
Identity = 90/158 (56.96%), Postives = 108/158 (68.35%), Query Frame = 0
Query: 50 MGN-CLKSNEVMAQDEPY--LPSPNSTEAMKVEDKPAGGSAMAKPRS---GARGKKVVRF 109
MGN C KSN+VMAQD+ Y P + E KV+ +P GSAMAKP++ GA GKKVVRF
Sbjct: 1 MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTGGAAGKKVVRF 60
Query: 110 KLQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSSTLEE 169
LQE+E E GR+ GD +G GVLRIKVV+SQKELK+ILK RENNS +LEE
Sbjct: 61 NLQEEEKDEE-----GRNSGD------SGPGVLRIKVVISQKELKQILKSRENNSCSLEE 120
Query: 170 LIAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPE 202
LI ELKVKGR +T+S DE GS++PAL+ IPE
Sbjct: 121 LIEELKVKGRATTVS-------ADETGSWKPALECIPE 140
BLAST of Spg000573 vs. NCBI nr
Match:
TYK24218.1 (hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa])
HSP 1 Score: 136.3 bits (342), Expect = 2.9e-28
Identity = 93/165 (56.36%), Postives = 110/165 (66.67%), Query Frame = 0
Query: 50 MGN-CLKSNEVMAQDEPY--LPSPNSTEAMKVEDKP-AGGSAMAKPRS---GARGKKVVR 109
MGN C ++N+VMAQD+ Y LP EA KVE++P GSAMAKP++ GA GKKVVR
Sbjct: 1 MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNGTGGAAGKKVVR 60
Query: 110 FKLQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSSTLE 169
F LQE+E E D GD +G GVLRIKVV+SQKELK ILK RENNS +LE
Sbjct: 61 FNLQEEEEDQE----------DRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLE 120
Query: 170 ELIAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPE---DLH 205
ELI ELKVKGR +T+S DE GS++PAL+ IPE DLH
Sbjct: 121 ELIEELKVKGRATTVS--------DEIGSWKPALECIPEGEGDLH 147
BLAST of Spg000573 vs. ExPASy TrEMBL
Match:
A0A6J1CG85 (uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011249 PE=4 SV=1)
HSP 1 Score: 170.2 bits (430), Expect = 8.7e-39
Identity = 106/163 (65.03%), Postives = 119/163 (73.01%), Query Frame = 0
Query: 50 MGNCLKSNEVMAQDEPYLPSPNS--TEA-MKVEDKPAGGSAMAKP-----RSGARGKKVV 109
MGNCL++N VMAQDE PSPNS TE KVEDKPA GSA+A+P R AR KKVV
Sbjct: 43 MGNCLRNNRVMAQDEACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARIAARRKKVV 102
Query: 110 RFKLQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSSTL 169
RF+ +EDE S G GGGVLRIKVVVSQKELK+ILK+RE+NSSTL
Sbjct: 103 RFQQREDEIS------------------GGGGGVLRIKVVVSQKELKQILKDRESNSSTL 162
Query: 170 EELIAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPEDLH 205
EEL+AELK+KGR TISDAR D EDENGS+RPAL+SIPEDLH
Sbjct: 163 EELLAELKMKGR--TISDARADNEEDENGSWRPALESIPEDLH 185
BLAST of Spg000573 vs. ExPASy TrEMBL
Match:
A0A0A0LQE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 6.2e-29
Identity = 90/158 (56.96%), Postives = 108/158 (68.35%), Query Frame = 0
Query: 50 MGN-CLKSNEVMAQDEPY--LPSPNSTEAMKVEDKPAGGSAMAKPRS---GARGKKVVRF 109
MGN C KSN+VMAQD+ Y P + E KV+ +P GSAMAKP++ GA GKKVVRF
Sbjct: 1 MGNICFKSNKVMAQDDSYDDFPPHHLIEPKKVQQQPLPGSAMAKPKNGTGGAAGKKVVRF 60
Query: 110 KLQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSSTLEE 169
LQE+E E GR+ GD +G GVLRIKVV+SQKELK+ILK RENNS +LEE
Sbjct: 61 NLQEEEKDEE-----GRNSGD------SGPGVLRIKVVISQKELKQILKSRENNSCSLEE 120
Query: 170 LIAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPE 202
LI ELKVKGR +T+S DE GS++PAL+ IPE
Sbjct: 121 LIEELKVKGRATTVS-------ADETGSWKPALECIPE 140
BLAST of Spg000573 vs. ExPASy TrEMBL
Match:
A0A5D3DKZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00200 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 1.4e-28
Identity = 93/165 (56.36%), Postives = 110/165 (66.67%), Query Frame = 0
Query: 50 MGN-CLKSNEVMAQDEPY--LPSPNSTEAMKVEDKP-AGGSAMAKPRS---GARGKKVVR 109
MGN C ++N+VMAQD+ Y LP EA KVE++P GSAMAKP++ GA GKKVVR
Sbjct: 1 MGNICFRTNKVMAQDDSYDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNGTGGAAGKKVVR 60
Query: 110 FKLQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSSTLE 169
F LQE+E E D GD +G GVLRIKVV+SQKELK ILK RENNS +LE
Sbjct: 61 FNLQEEEEDQE----------DRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLE 120
Query: 170 ELIAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPE---DLH 205
ELI ELKVKGR +T+S DE GS++PAL+ IPE DLH
Sbjct: 121 ELIEELKVKGRATTVS--------DEIGSWKPALECIPEGEGDLH 147
BLAST of Spg000573 vs. ExPASy TrEMBL
Match:
A0A1J7GZ96 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_07219 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 59/159 (37.11%), Postives = 88/159 (55.35%), Query Frame = 0
Query: 50 MGNCLKSNEVMAQD-EPYLPSPNSTEAMKVEDKPAGGSAMAK----PRSGARGKKVVRFK 109
MGNCL++N++ AQD E Y S + KV+ A S+ K G + KK VRF
Sbjct: 1 MGNCLRNNKISAQDHENYGTHVESCDVAKVQKVNASSSSKLKESVQKEQGMKKKKKVRFN 60
Query: 110 LQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILK-ERENNSSTLEE 169
+Q D+ G GDGG + GV+RIKVV++QKE KR+L + + ++++LE+
Sbjct: 61 IQNDD---------GEENGDGGSEKNSRSGVVRIKVVMTQKEFKRVLSCQNDEHNTSLEQ 120
Query: 170 LIAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPED 203
L++ K +G S I + S+RPAL+SIPE+
Sbjct: 121 LLSAFKFRGGVSKICEYN----NVGTSSWRPALESIPEN 146
BLAST of Spg000573 vs. ExPASy TrEMBL
Match:
A0A4V3WQ11 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_029836 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 2.6e-11
Identity = 61/154 (39.61%), Postives = 88/154 (57.14%), Query Frame = 0
Query: 50 MGNCLKSNEVMAQDEPYLPSPNSTEAMKVEDKPAGGSAMAKPRSGARGKKVVRFKLQEDE 109
MGNC+ SN+++ QDE P A++ + G KK VRFKL E+E
Sbjct: 1 MGNCVTSNKILGQDEKD-EQPREERAIERSVRHVDGGK----------KKSVRFKLHEEE 60
Query: 110 NSGEGDQVIGRSGGDGGDGDGAG-GGVLRIKVVVSQKELKRILKERENNSSTLEELIAEL 169
E ++ G+G + G GG +RI+VVV+Q+EL RIL + SS +E+++ E+
Sbjct: 61 EEEEEEE-----DGNGEERQGCSKGGAVRIRVVVTQRELIRILNTKSKYSS-VEQMLGEM 120
Query: 170 KVKGRTSTISDARTDEVEDENGSYRPALKSIPED 203
K+K R IS R+ + E NGS+RPAL+SIPED
Sbjct: 121 KLKSR--KISQIRSSDDEGTNGSWRPALESIPED 135
BLAST of Spg000573 vs. TAIR 10
Match:
AT3G21680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 0
Query: 105 LQEDENSGEGDQVIGRSGGDGGDGDGAGGGVLRIKVVVSQKELKRILKERENNSSTLEEL 164
L+E + S G++ RS + V+RIKVVV++KEL++IL + N +++++L
Sbjct: 28 LEEGKTSFRGEEESERSTEEESK-------VVRIKVVVTKKELRQILGHK-NGINSIQQL 87
Query: 165 IAELKVKGRTSTISDARTDEVEDENGSYRPALKSIPE 202
+ LK GR +++ DE E+ + ++RP L+SIPE
Sbjct: 88 VHVLKDSGRNISMASYEEDEKEEGDENWRPTLESIPE 116
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022140639.1 | 1.8e-38 | 65.03 | uncharacterized protein LOC111011249 [Momordica charantia] | [more] |
KAG6570883.1 | 1.5e-37 | 67.07 | hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_038902397.1 | 8.6e-33 | 61.29 | uncharacterized protein LOC120089037 [Benincasa hispida] | [more] |
KGN63254.1 | 1.3e-28 | 56.96 | hypothetical protein Csa_022493 [Cucumis sativus] | [more] |
TYK24218.1 | 2.9e-28 | 56.36 | hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CG85 | 8.7e-39 | 65.03 | uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
A0A0A0LQE9 | 6.2e-29 | 56.96 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1 | [more] |
A0A5D3DKZ8 | 1.4e-28 | 56.36 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1J7GZ96 | 2.0e-11 | 37.11 | Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_07219 PE=4 S... | [more] |
A0A4V3WQ11 | 2.6e-11 | 39.61 | Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0298... | [more] |
Match Name | E-value | Identity | Description | |
AT3G21680.1 | 1.6e-05 | 35.05 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... | [more] |