Spg000530 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg000530
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ubiquitin fusion degradation protein 1 homolog
Location	scaffold8: 38148388 .. 38149645 (-)
RNA-Seq Expression	Spg000530
Synteny	Spg000530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATACAGCTTAGAGACGACTTTGAGAAATTTTTCATGCCTGACAACCGGGGACAGTATCATGGTGGCATATAACAACAAGAAATATTACATTGATATAATTGAAACGAAGCCTTCAAATGCAATAAGCATAATTGAGACTGACTGTGAAGTGGACTTTGCACCCCCTCTGGATTACAAGGAACCTGAAAAGCCGGTTGCATCCCTTCCTACAGGCAAGGCTCCAGTGCAAGGTCAGACCTTATGTTATTTATGAGTAGTGCCTTTTATGAACTTAAAAAAAAGAATAGAACTGCTTGTTATTGTCAATTATCTCTAGGCTATCAAGTTTGGAAAAGAGTAATTAACTAACACCAATAGTTTATTCTGCTTGACATGTTTTAGCTGGGAGAATTTTTCTTTTTCTCCATATTTGAAATGCGACCAAATACATATTCTTTTTCCGTACAGATGAGGAGCCCCCTGCAGAAGCTGAACCCAAATTCAATCCCTTCACTGGAGTCGGGAGGCGTTTGGATGGGAAACCATCTAAACAACAGCCACCACTATCTTCAACTTCAATATCCAAGGACAAGCAAATTGATACAAGAAATGTTAGCGGCCAGCCTTCTGCTGGGTCTAGCTCTCAGAATGCTACCAGGCAGTCTCAGGGAAAGCTCGTCTTTGGGGGAAATGCAAGCCGAAATCCCAAGGAAACCAAGAAGGTGTGCTGTTTGCTCTGTGTCATTTTAAAGTATTCTGAAGTACTGAGAACTAATCTATAAGCAACGATTATCCACGTTCCCTCTGTTAATGCTCCGTCATACAAAAGAACTTCAATCAAAATGATAAACTGACTGTAAAGCTGATATTTTCCAGGAAGCTGAAAAAGATGGTAAGCAAGAGCAGCAGCAGCCCAAAGAGAAAGAAGAGCCGAAGTTTCAGCCTTTCGCTGGGAAGAAGTATTCATTGAGAGGTTAATTAGATCACCAAACTATTGTTTACACAAACACCATTTATTCTGTTTCCATTCCATCTATGCTTTTGTGATAGCAACAGTTTTATAAGTGAAAATTTAGTTGAAATGTAAGATTTTCATGCACAGAAATTTTCTTTTATTTACCAAAAATTGTACATTGCTAAATCAGGAGTCAGAGCTATTATTCAAAATGTTCTTTGAGGTGGTAATATCTCACACAGTGTATTTGTGTGAGATGTTTGCTCTCCCTGTTACATTACAACAGACGCTTAAACTCTTATGCAACCAACAAGGCAAC

mRNA sequence

ATGTCATACAGCTTAGAGACGACTTTGAGAAATTTTTCATGCCTGACAACCGGGGACAGTATCATGGTGGCATATAACAACAAGAAATATTACATTGATATAATTGAAACGAAGCCTTCAAATGCAATAAGCATAATTGAGACTGACTGTGAAGTGGACTTTGCACCCCCTCTGGATTACAAGGAACCTGAAAAGCCGGTTGCATCCCTTCCTACAGGCAAGGCTCCAGTGCAAGATGAGGAGCCCCCTGCAGAAGCTGAACCCAAATTCAATCCCTTCACTGGAGTCGGGAGGCGTTTGGATGGGAAACCATCTAAACAACAGCCACCACTATCTTCAACTTCAATATCCAAGGACAAGCAAATTGATACAAGAAATGTTAGCGGCCAGCCTTCTGCTGGGTCTAGCTCTCAGAATGCTACCAGGCAGTCTCAGGGAAAGCTCGTCTTTGGGGGAAATGCAAGCCGAAATCCCAAGGAAACCAAGAAGGAAGCTGAAAAAGATGGTAAGCAAGAGCAGCAGCAGCCCAAAGAGAAAGAAGAGCCGAAGTTTCAGCCTTTCGCTGGGAAGAAGTATTCATTGAGAGGTTAA

Coding sequence (CDS)

ATGTCATACAGCTTAGAGACGACTTTGAGAAATTTTTCATGCCTGACAACCGGGGACAGTATCATGGTGGCATATAACAACAAGAAATATTACATTGATATAATTGAAACGAAGCCTTCAAATGCAATAAGCATAATTGAGACTGACTGTGAAGTGGACTTTGCACCCCCTCTGGATTACAAGGAACCTGAAAAGCCGGTTGCATCCCTTCCTACAGGCAAGGCTCCAGTGCAAGATGAGGAGCCCCCTGCAGAAGCTGAACCCAAATTCAATCCCTTCACTGGAGTCGGGAGGCGTTTGGATGGGAAACCATCTAAACAACAGCCACCACTATCTTCAACTTCAATATCCAAGGACAAGCAAATTGATACAAGAAATGTTAGCGGCCAGCCTTCTGCTGGGTCTAGCTCTCAGAATGCTACCAGGCAGTCTCAGGGAAAGCTCGTCTTTGGGGGAAATGCAAGCCGAAATCCCAAGGAAACCAAGAAGGAAGCTGAAAAAGATGGTAAGCAAGAGCAGCAGCAGCCCAAAGAGAAAGAAGAGCCGAAGTTTCAGCCTTTCGCTGGGAAGAAGTATTCATTGAGAGGTTAA

Protein sequence

MSYSLETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDTRNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKFQPFAGKKYSLRG

Homology

[Close]

BLAST of Spg000530 vs. NCBI nr
Match: XP_022947895.1 (ubiquitin fusion degradation protein 1 homolog [Cucurbita moschata] >XP_022947897.1 ubiquitin fusion degradation protein 1 homolog [Cucurbita moschata] >XP_022947898.1 ubiquitin fusion degradation protein 1 homolog [Cucurbita moschata])

HSP 1 Score: 349.4 bits (895), Expect = 2.1e-92
Identity = 184/192 (95.83%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEP+
Sbjct: 132 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPQ 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPVASLPTGKAPVQDE+P AEAEPKFNPFTGVGRRLDGKPSKQQP LSSTS SKDKQIDT
Sbjct: 192 KPVASLPTGKAPVQDEQPAAEAEPKFNPFTGVGRRLDGKPSKQQPSLSSTSASKDKQIDT 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           RNVSGQPSAGSSSQNATRQSQGKLVFG NASRNPKETKKE EKDGKQEQQQPKEKEE KF
Sbjct: 252 RNVSGQPSAGSSSQNATRQSQGKLVFGANASRNPKETKKETEKDGKQEQQQPKEKEEAKF 311

Query: 185 QPFAGKKYSLRG 197
           QPFAGKKYSLRG
Sbjct: 312 QPFAGKKYSLRG 323

[Close]

BLAST of Spg000530 vs. NCBI nr
Match: XP_022146194.1 (ubiquitin fusion degradation protein 1 homolog [Momordica charantia] >XP_022146195.1 ubiquitin fusion degradation protein 1 homolog [Momordica charantia])

HSP 1 Score: 344.4 bits (882), Expect = 6.7e-91
Identity = 182/192 (94.79%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE
Sbjct: 132 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPVA LPTGKAP+Q+EE PAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTS+SKDKQIDT
Sbjct: 192 KPVAPLPTGKAPIQEEEAPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSMSKDKQIDT 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           RNVSGQ SAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEK+GKQE  QPKEKEEPKF
Sbjct: 252 RNVSGQTSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKEGKQE--QPKEKEEPKF 311

Query: 185 QPFAGKKYSLRG 197
           QPF GKKYSLRG
Sbjct: 312 QPFGGKKYSLRG 321

[Close]

BLAST of Spg000530 vs. NCBI nr
Match: KAG6605041.1 (Ubiquitin recognition factor in ER-associated degradation protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 183/192 (95.31%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEP+
Sbjct: 132 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPQ 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPVASLPTGKAPVQDE+P AEAEPKFNPFTGVGRRLDGKPSKQQP LSSTS SKDKQIDT
Sbjct: 192 KPVASLPTGKAPVQDEQPAAEAEPKFNPFTGVGRRLDGKPSKQQPSLSSTSASKDKQIDT 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           RNVSGQPSAGSSSQNATRQSQGKLVFG NASRNPKETKKE EKDGKQE QQPKEKEE KF
Sbjct: 252 RNVSGQPSAGSSSQNATRQSQGKLVFGANASRNPKETKKETEKDGKQE-QQPKEKEEAKF 311

Query: 185 QPFAGKKYSLRG 197
           QPFAGKKYSLRG
Sbjct: 312 QPFAGKKYSLRG 322

[Close]

BLAST of Spg000530 vs. NCBI nr
Match: XP_023007048.1 (ubiquitin fusion degradation protein 1 homolog [Cucurbita maxima] >XP_023007049.1 ubiquitin fusion degradation protein 1 homolog [Cucurbita maxima] >XP_023007051.1 ubiquitin fusion degradation protein 1 homolog [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 183/192 (95.31%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEP+
Sbjct: 132 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPQ 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPVASLPTGKAPVQDE+P AEAEPKFNPFTGVGRRLDGKPSKQQP LSSTS SKDKQIDT
Sbjct: 192 KPVASLPTGKAPVQDEQPTAEAEPKFNPFTGVGRRLDGKPSKQQPSLSSTSASKDKQIDT 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           RNVSGQPSAGSSSQNATRQSQGKLVFG NASRNPKETKKE EKDGKQE QQPKEKEE KF
Sbjct: 252 RNVSGQPSAGSSSQNATRQSQGKLVFGANASRNPKETKKETEKDGKQE-QQPKEKEEAKF 311

Query: 185 QPFAGKKYSLRG 197
           QPFAGKKYSLRG
Sbjct: 312 QPFAGKKYSLRG 322

[Close]

BLAST of Spg000530 vs. NCBI nr
Match: KAG7035054.1 (Ubiquitin recognition factor in ER-associated degradation protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.0 bits (876), Expect = 3.3e-90
Identity = 182/192 (94.79%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEP+
Sbjct: 141 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPQ 200

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPVASLPTGKAPVQDE+P AEAEPKFNPFTGVGRRLDGKPSKQQP LSSTS SKDKQIDT
Sbjct: 201 KPVASLPTGKAPVQDEQPAAEAEPKFNPFTGVGRRLDGKPSKQQPSLSSTSASKDKQIDT 260

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           RNVSGQPSAGSSSQNATRQSQGKLVFG NASRNPKETKKE EKDGKQE QQPKEK+E KF
Sbjct: 261 RNVSGQPSAGSSSQNATRQSQGKLVFGANASRNPKETKKETEKDGKQE-QQPKEKDEAKF 320

Query: 185 QPFAGKKYSLRG 197
           QPFAGKKYSLRG
Sbjct: 321 QPFAGKKYSLRG 331

[Close]

BLAST of Spg000530 vs. ExPASy Swiss-Prot
Match: Q55BK0 (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-18
Identity = 62/172 (36.05%), Postives = 84/172 (48.84%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LE +LR F+ LT  D IM+ YNN KYY+ ++E KP+NAISIIE D  VDFAPP+D KE  
Sbjct: 146 LENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKEAT 205

Query: 65  KPVASLP-----------------TGKAPV---------QDEEPPAEAEPKFNPFTGVGR 124
            P  S P                 T   P+          D +  ++ EPKF  F G G 
Sbjct: 206 SPSTSSPGSHVSGPSKGLTFGPASTSAKPIPGGKKKKDESDSDSDSDDEPKFKAFAGTGA 265

Query: 125 RLDGK---PSKQQPPLSSTSISKDKQIDTRNVSGQPSAGSSSQNATRQSQGK 148
           RLDGK   P    P   +T+ + +   +  N +   +  +S+ N T+    K
Sbjct: 266 RLDGKVGTPLGTSPKTLNTNNNNNNNNNNNNNNNNNNNNNSNNNNTKNEDTK 317

[Close]

BLAST of Spg000530 vs. ExPASy Swiss-Prot
Match: P70362 (Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-17
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LE  LRNF+CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE
Sbjct: 142 LENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPE 201

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQP 110
           +PV    + +   + +      E  F  F+G G RLDGK    +P
Sbjct: 202 RPVQHEESIEG--EADHSGYAGEVGFRAFSGSGNRLDGKKKGVEP 244

[Close]

BLAST of Spg000530 vs. ExPASy Swiss-Prot
Match: Q9ES53 (Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Rattus norvegicus OX=10116 GN=Ufd1 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-17
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LE  LRNF+CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE
Sbjct: 142 LENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPE 201

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQP 110
           +PV    + +   + +      E  F  F+G G RLDGK    +P
Sbjct: 202 RPVQHEESIEG--EADHSGYAGEVGFRAFSGSGNRLDGKKKGVEP 244

[Close]

BLAST of Spg000530 vs. ExPASy Swiss-Prot
Match: Q92890 (Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapiens OX=9606 GN=UFD1 PE=1 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-16
Identity = 49/105 (46.67%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LE  LRNF+CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE
Sbjct: 142 LENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPE 201

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQP 110
           + V    + +   + +      E  F  F+G G RLDGK    +P
Sbjct: 202 RQVQHEESTEG--EADHSGYAGELGFRAFSGSGNRLDGKKKGVEP 244

[Close]

BLAST of Spg000530 vs. ExPASy Swiss-Prot
Match: Q9VTF9 (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=Ufd1-like PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-12
Identity = 48/109 (44.04%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LE  LRNF+CLT GD I + YN K Y + ++ETKP NA+SIIE D  V+F  P+ YK+  
Sbjct: 139 LENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHS 198

Query: 65  KPVA--SLPTGKAPVQDEE----PPAEAEPKFNPFTGVGRRLDGKPSKQ 108
           +  A  S   G A     E      A  E     F G G RLDGK  K+
Sbjct: 199 ETQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLDGKKKKE 247

[Close]

BLAST of Spg000530 vs. ExPASy TrEMBL
Match: A0A6J1G7W0 (ubiquitin fusion degradation protein 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451649 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.0e-92
Identity = 184/192 (95.83%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEP+
Sbjct: 132 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPQ 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPVASLPTGKAPVQDE+P AEAEPKFNPFTGVGRRLDGKPSKQQP LSSTS SKDKQIDT
Sbjct: 192 KPVASLPTGKAPVQDEQPAAEAEPKFNPFTGVGRRLDGKPSKQQPSLSSTSASKDKQIDT 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           RNVSGQPSAGSSSQNATRQSQGKLVFG NASRNPKETKKE EKDGKQEQQQPKEKEE KF
Sbjct: 252 RNVSGQPSAGSSSQNATRQSQGKLVFGANASRNPKETKKETEKDGKQEQQQPKEKEEAKF 311

Query: 185 QPFAGKKYSLRG 197
           QPFAGKKYSLRG
Sbjct: 312 QPFAGKKYSLRG 323

[Close]

BLAST of Spg000530 vs. ExPASy TrEMBL
Match: A0A6J1CWL5 (ubiquitin fusion degradation protein 1 homolog OS=Momordica charantia OX=3673 GN=LOC111015470 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.2e-91
Identity = 182/192 (94.79%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE
Sbjct: 132 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPVA LPTGKAP+Q+EE PAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTS+SKDKQIDT
Sbjct: 192 KPVAPLPTGKAPIQEEEAPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSMSKDKQIDT 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           RNVSGQ SAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEK+GKQE  QPKEKEEPKF
Sbjct: 252 RNVSGQTSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKEGKQE--QPKEKEEPKF 311

Query: 185 QPFAGKKYSLRG 197
           QPF GKKYSLRG
Sbjct: 312 QPFGGKKYSLRG 321

[Close]

BLAST of Spg000530 vs. ExPASy TrEMBL
Match: A0A6J1L3W2 (ubiquitin fusion degradation protein 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111499655 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.2e-91
Identity = 183/192 (95.31%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEP+
Sbjct: 132 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPQ 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPVASLPTGKAPVQDE+P AEAEPKFNPFTGVGRRLDGKPSKQQP LSSTS SKDKQIDT
Sbjct: 192 KPVASLPTGKAPVQDEQPTAEAEPKFNPFTGVGRRLDGKPSKQQPSLSSTSASKDKQIDT 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           RNVSGQPSAGSSSQNATRQSQGKLVFG NASRNPKETKKE EKDGKQE QQPKEKEE KF
Sbjct: 252 RNVSGQPSAGSSSQNATRQSQGKLVFGANASRNPKETKKETEKDGKQE-QQPKEKEEAKF 311

Query: 185 QPFAGKKYSLRG 197
           QPFAGKKYSLRG
Sbjct: 312 QPFAGKKYSLRG 322

[Close]

BLAST of Spg000530 vs. ExPASy TrEMBL
Match: A0A1S3CF02 (ubiquitin fusion degradation protein 1 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499727 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.3e-87
Identity = 175/192 (91.15%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE
Sbjct: 132 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPV SLPTGKAPVQ+EEPPAEAEPKFNPFTGVGRRLDGKPS QQPPLS TSISKDKQ+DT
Sbjct: 192 KPVPSLPTGKAPVQEEEPPAEAEPKFNPFTGVGRRLDGKPSAQQPPLSWTSISKDKQVDT 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           R V+GQPSAGS+S+NA+RQS+GKLVFGGNASR PKETKKE EKDGKQE  QPKEKEE KF
Sbjct: 252 RTVTGQPSAGSTSRNASRQSEGKLVFGGNASRTPKETKKEGEKDGKQE--QPKEKEEAKF 311

Query: 185 QPFAGKKYSLRG 197
           QPF GKKYSLRG
Sbjct: 312 QPFGGKKYSLRG 321

[Close]

BLAST of Spg000530 vs. ExPASy TrEMBL
Match: A0A5A7TS30 (Ubiquitin fusion degradation protein 1-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001720 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.3e-87
Identity = 175/192 (91.15%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE
Sbjct: 127 LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 186

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           KPV SLPTGKAPVQ+EEPPAEAEPKFNPFTGVGRRLDGKPS QQPPLS TSISKDKQ+DT
Sbjct: 187 KPVPSLPTGKAPVQEEEPPAEAEPKFNPFTGVGRRLDGKPSAQQPPLSWTSISKDKQVDT 246

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKETKKEAEKDGKQEQQQPKEKEEPKF 184
           R V+GQPSAGS+S+NA+RQS+GKLVFGGNASR PKETKKE EKDGKQE  QPKEKEE KF
Sbjct: 247 RTVTGQPSAGSTSRNASRQSEGKLVFGGNASRTPKETKKEGEKDGKQE--QPKEKEEAKF 306

Query: 185 QPFAGKKYSLRG 197
           QPF GKKYSLRG
Sbjct: 307 QPFGGKKYSLRG 316

[Close]

BLAST of Spg000530 vs. TAIR 10
Match: AT2G21270.1 (ubiquitin fusion degradation 1 )

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-54
Identity = 125/194 (64.43%), Postives = 146/194 (75.26%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LET LRN+SCLT+GDSIMV YNNKKY+IDI+ETKP+NAISIIETDCEVDFAPPLDYKEPE
Sbjct: 132 LETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFAPPLDYKEPE 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           +P A     K P + EE   E EPKFNPFTG GRRLDG+P   +P  +  S SK KQ   
Sbjct: 192 RPTAP-SAAKGPAKAEEVVDEPEPKFNPFTGSGRRLDGRPLAYEP--APASSSKGKQPVV 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKET--KKEAEKDGKQEQQQPKEKEEP 184
            N +GQ S  SSS+ ATR +QGKLVFG N +R PKE   K  A K+ K+E+Q+  +K+EP
Sbjct: 252 ANGNGQSSVASSSEKATR-AQGKLVFGANGNRAPKEAAPKVGAAKETKKEEQE--KKDEP 311

Query: 185 KFQPFAGKKYSLRG 197
           KFQ F+GKKYSLRG
Sbjct: 312 KFQAFSGKKYSLRG 319

[Close]

BLAST of Spg000530 vs. TAIR 10
Match: AT2G21270.2 (ubiquitin fusion degradation 1 )

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-54
Identity = 125/194 (64.43%), Postives = 146/194 (75.26%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LET LRN+SCLT+GDSIMV YNNKKY+IDI+ETKP+NAISIIETDCEVDFAPPLDYKEPE
Sbjct: 132 LETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFAPPLDYKEPE 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           +P A     K P + EE   E EPKFNPFTG GRRLDG+P   +P  +  S SK KQ   
Sbjct: 192 RPTAP-SAAKGPAKAEEVVDEPEPKFNPFTGSGRRLDGRPLAYEP--APASSSKGKQPVV 251

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKET--KKEAEKDGKQEQQQPKEKEEP 184
            N +GQ S  SSS+ ATR +QGKLVFG N +R PKE   K  A K+ K+E+Q+  +K+EP
Sbjct: 252 ANGNGQSSVASSSEKATR-AQGKLVFGANGNRAPKEAAPKVGAAKETKKEEQE--KKDEP 311

Query: 185 KFQPFAGKKYSLRG 197
           KFQ F+GKKYSLRG
Sbjct: 312 KFQAFSGKKYSLRG 319

[Close]

BLAST of Spg000530 vs. TAIR 10
Match: AT2G21270.3 (ubiquitin fusion degradation 1 )

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-54
Identity = 125/194 (64.43%), Postives = 146/194 (75.26%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LET LRN+SCLT+GDSIMV YNNKKY+IDI+ETKP+NAISIIETDCEVDFAPPLDYKEPE
Sbjct: 153 LETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFAPPLDYKEPE 212

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           +P A     K P + EE   E EPKFNPFTG GRRLDG+P   +P  +  S SK KQ   
Sbjct: 213 RPTAP-SAAKGPAKAEEVVDEPEPKFNPFTGSGRRLDGRPLAYEP--APASSSKGKQPVV 272

Query: 125 RNVSGQPSAGSSSQNATRQSQGKLVFGGNASRNPKET--KKEAEKDGKQEQQQPKEKEEP 184
            N +GQ S  SSS+ ATR +QGKLVFG N +R PKE   K  A K+ K+E+Q+  +K+EP
Sbjct: 273 ANGNGQSSVASSSEKATR-AQGKLVFGANGNRAPKEAAPKVGAAKETKKEEQE--KKDEP 332

Query: 185 KFQPFAGKKYSLRG 197
           KFQ F+GKKYSLRG
Sbjct: 333 KFQAFSGKKYSLRG 340

[Close]

BLAST of Spg000530 vs. TAIR 10
Match: AT4G38930.2 (Ubiquitin fusion degradation UFD1 family protein )

HSP 1 Score: 196.1 bits (497), Expect = 2.7e-50
Identity = 119/198 (60.10%), Postives = 135/198 (68.18%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LET LRN+SCLT GDSIMV YNNKKY+IDI+E KPSN ISIIETDCEVDFAPPLDYKEPE
Sbjct: 132 LETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFAPPLDYKEPE 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           +PVA  P        E   AEAEPKFNPFTG GRRLDG+P   +P           Q   
Sbjct: 192 RPVAPAPAKGEAKAKEVDVAEAEPKFNPFTGSGRRLDGRPLSYEP-----------QPGA 251

Query: 125 RNVSGQ-----PSAGSSSQNATRQSQGKLVFGGNASRNPKETKK-EAEKDGKQEQQQPKE 184
            N +GQ      S+ S S+ AT+Q++GKLVFG N  R+ KET K  A KD KQE++  K 
Sbjct: 252 ANSNGQSHPVASSSSSGSEKATQQNRGKLVFGSNVERSTKETTKVGAGKDRKQEEEAEK- 311

Query: 185 KEEPKFQPFAGKKYSLRG 197
             E KFQ F+GKKYSLRG
Sbjct: 312 --EAKFQAFSGKKYSLRG 315

[Close]

BLAST of Spg000530 vs. TAIR 10
Match: AT4G38930.1 (Ubiquitin fusion degradation UFD1 family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-49
Identity = 121/198 (61.11%), Postives = 137/198 (69.19%), Query Frame = 0


Query: 5   LETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPE 64
           LET LRN+SCLT GDSIMV YNNKKY+IDI+E KPSN ISIIETDCEVDFAPPLDYKEPE
Sbjct: 132 LETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFAPPLDYKEPE 191

Query: 65  KPVASLPTGKAPVQDEEPPAEAEPKFNPFTGVGRRLDGKPSKQQPPLSSTSISKDKQIDT 124
           +PVA  P  KA    E   AEAEPKFNPFTG GRRLDG+P   +P           Q   
Sbjct: 192 RPVAPAP-AKA---KEVDVAEAEPKFNPFTGSGRRLDGRPLSYEP-----------QPGA 251

Query: 125 RNVSGQ-----PSAGSSSQNATRQSQGKLVFGGNASRNPKETKK-EAEKDGKQEQQQPKE 184
            N +GQ      S+ S S+ AT+Q++GKLVFG N  R+ KET K  A KD KQE++  K 
Sbjct: 252 ANSNGQSHPVASSSSSGSEKATQQNRGKLVFGSNVERSTKETTKVGAGKDRKQEEEAEK- 311

Query: 185 KEEPKFQPFAGKKYSLRG 197
             E KFQ F+GKKYSLRG
Sbjct: 312 --EAKFQAFSGKKYSLRG 311

The following BLAST results are available for this feature:

BLAST of Spg000530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947895.1	2.1e-92	95.83	ubiquitin fusion degradation protein 1 homolog [Cucurbita moschata] >XP_02294789...	[more]
XP_022146194.1	6.7e-91	94.79	ubiquitin fusion degradation protein 1 homolog [Momordica charantia] >XP_0221461...	[more]
KAG6605041.1	1.5e-90	95.31	Ubiquitin recognition factor in ER-associated degradation protein 1, partial [Cu...	[more]
XP_023007048.1	1.5e-90	95.31	ubiquitin fusion degradation protein 1 homolog [Cucurbita maxima] >XP_023007049....	[more]
KAG7035054.1	3.3e-90	94.79	Ubiquitin recognition factor in ER-associated degradation protein 1 [Cucurbita a...	[more]

BLAST of Spg000530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55BK0	3.5e-18	36.05	Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44...	[more]
P70362	3.0e-17	47.62	Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus muscu...	[more]
Q9ES53	3.0e-17	47.62	Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Rattus no...	[more]
Q92890	1.9e-16	46.67	Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapi...	[more]
Q9VTF9	2.9e-12	44.04	Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster OX=722...	[more]

BLAST of Spg000530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7W0	1.0e-92	95.83	ubiquitin fusion degradation protein 1 homolog OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1CWL5	3.2e-91	94.79	ubiquitin fusion degradation protein 1 homolog OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1L3W2	7.2e-91	95.31	ubiquitin fusion degradation protein 1 homolog OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3CF02	1.3e-87	91.15	ubiquitin fusion degradation protein 1 homolog isoform X1 OS=Cucumis melo OX=365...	[more]
A0A5A7TS30	1.3e-87	91.15	Ubiquitin fusion degradation protein 1-like protein isoform X1 OS=Cucumis melo v...	[more]

BLAST of Spg000530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21270.1	2.4e-54	64.43	ubiquitin fusion degradation 1	[more]
AT2G21270.2	2.4e-54	64.43	ubiquitin fusion degradation 1	[more]
AT2G21270.3	2.4e-54	64.43	ubiquitin fusion degradation 1	[more]
AT4G38930.2	2.7e-50	60.10	Ubiquitin fusion degradation UFD1 family protein	[more]
AT4G38930.1	1.8e-49	61.11	Ubiquitin fusion degradation UFD1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.330.10		coord: 2..55 e-value: 2.3E-21 score: 77.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..186
None	No IPR available	PANTHER	PTHR12555:SF23	UBIQUITIN FUSION DEGRADATION PROTEIN 1 HOMOLOG	coord: 5..196
IPR004854	Ubiquitin fusion degradation protein Ufd1-like	PFAM	PF03152	UFD1	coord: 4..57 e-value: 6.4E-21 score: 74.6
IPR004854	Ubiquitin fusion degradation protein Ufd1-like	PANTHER	PTHR12555	UBIQUITIN FUSION DEGRADATON PROTEIN 1	coord: 5..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg000530.1	Spg000530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0034098	VCP-NPL4-UFD1 AAA ATPase complex
molecular_function	GO:0031593	polyubiquitin modification-dependent protein binding