Spg000346 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg000346
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold8: 38823352 .. 38824509 (-)
RNA-Seq ExpressionSpg000346
SyntenySpg000346
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAGAAGAGGGAAAAACTTGGTGGACACTATAATATGGAATCAAGACCCTAAAGGAGCATTCACGGTTAAGAGTGCTTACCACTTGGCTAGAAACATAAGCCTAAACCCCAGGGCTTCAGAATCGGACTCCTCATTGACCAAAGCGGTGTGGAGATCAATATGGAACGCAAACTGCATCCCGAGGGCCAAAATCATAACTTGGAAAATCCTTAAGGACATAATCCCTACCAAAGTCAATATTTATAAAAAAAGGCGTGGACTCTAATACTTTGTGTTGTGTGTGCAGGTCGAAGAAGGAGAGCACGGTGCATCTATTCTGGGAGTGTAAGTTCGCCAAGAAAATTTGGAATGAATTTTTCCTTAATTCCTATCTATTCTTGAACAAATGCAGAGTTGGTTGGAGCCCGATTGATTGTTGGGATGATATGCGAAGAGTTCTCAGCAAAGCAGAATTGAACAGAGCAATCATAGTAAAAAACCCCAGGTCTCAGACAAACATGCAGCACCATCAACAACCTTATGGAAGACAAACCTGAAGGCGGAGAGCAAAGGCAAATGTCCTCAAACCCTAAACCTCCTGAGTCACCTCCAATGGGAGCCGTCGGACTCGGAGAGCTGGAAGTTGAATGCAGATGCGTCTTGGAACGAGAAATCAAGCAAAGGTGAGCTGGGATGGGCCATCCGTGACTCCGAAGGGTCTTTGATCGGAGTGGGCTACAAGCAATTGTACAAGAACTGGCCGATTAAATATATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATATGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTCGTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGGCGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTGTTGGTGTACCTAATTTAGCTTCTTAA

mRNA sequence

ATGCGAAGAAGAGGGAAAAACTTGGTGGACACTATAATATGGAATCAAGACCCTAAAGGAGCATTCACGGTTAAGAGTGCTTACCACTTGGCTAGAAACATAAGCCTAAACCCCAGGGCTTCAGAATCGGACTCCTCATTGACCAAAGCGGTCGAAGAAGGAGAGCACGGTGCATCTATTCTGGGAGTTTCTCAGCAAAGCAGAATTGAACAGAGCAATCATAGTAAAAAACCCCAGGTCTCAGACAAACATGCAGCACCATCAACAACCTTATGGAAGACAAACCTGAAGGCGGAGAGCAAAGGCAAATGTCCTCAAACCCTAAACCTCCTGAGTCACCTCCAATGGGAGCCGTCGGACTCGGAGAGCTGGAAGTTGAATGCAGATGCGTCTTGGAACGAGAAATCAAGCAAAGGTGAGCTGGGATGGGCCATCCGTGACTCCGAAGGGTCTTTGATCGGAGTGGGCTACAAGCAATTGTACAAGAACTGGCCGATTAAATATATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATATGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTCGTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGGCGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTGTTGGTGTACCTAATTTAGCTTCTTAA

Coding sequence (CDS)

ATGCGAAGAAGAGGGAAAAACTTGGTGGACACTATAATATGGAATCAAGACCCTAAAGGAGCATTCACGGTTAAGAGTGCTTACCACTTGGCTAGAAACATAAGCCTAAACCCCAGGGCTTCAGAATCGGACTCCTCATTGACCAAAGCGGTCGAAGAAGGAGAGCACGGTGCATCTATTCTGGGAGTTTCTCAGCAAAGCAGAATTGAACAGAGCAATCATAGTAAAAAACCCCAGGTCTCAGACAAACATGCAGCACCATCAACAACCTTATGGAAGACAAACCTGAAGGCGGAGAGCAAAGGCAAATGTCCTCAAACCCTAAACCTCCTGAGTCACCTCCAATGGGAGCCGTCGGACTCGGAGAGCTGGAAGTTGAATGCAGATGCGTCTTGGAACGAGAAATCAAGCAAAGGTGAGCTGGGATGGGCCATCCGTGACTCCGAAGGGTCTTTGATCGGAGTGGGCTACAAGCAATTGTACAAGAACTGGCCGATTAAATATATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATATGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTCGTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGGCGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTGTTGGTGTACCTAATTTAGCTTCTTAA

Protein sequence

MRRRGKNLVDTIIWNQDPKGAFTVKSAYHLARNISLNPRASESDSSLTKAVEEGEHGASILGVSQQSRIEQSNHSKKPQVSDKHAAPSTTLWKTNLKAESKGKCPQTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGAEQVVFSKCPRLSNSLAHELAQAAQSHGDFVWFCDRSLPIDREDEVFWRKNVFPSWFYEIITNGVGVPNLAS
Homology
BLAST of Spg000346 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-15
Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 0

Query: 73  NHSKKPQVSDKHAAPSTTLWK-TNLKAESKGKCPQTLNLL-----SHLQWEPSDSESWKL 132
           NH        +H++ ST + + T    ES  +   +L++L     + L+WEP     W L
Sbjct: 22  NHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTL 81

Query: 133 NADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGE 192
           NADASW++ + +G +GW IR  +G ++  G + +     +K +EA AILEGL    N+G 
Sbjct: 82  NADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGV 141

Query: 193 YERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEI-RRKVGAEQVVFSKCPRLSNSL 252
                  L +E D  +    LNR+ EDL++   VV+EI   +   E + F+K  R +N  
Sbjct: 142 LR----PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGC 201

Query: 253 AHELAQAA 254
           AH LAQ A
Sbjct: 202 AHSLAQRA 205

BLAST of Spg000346 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-11
Identity = 55/170 (32.35%), Postives = 91/170 (53.53%), Query Frame = 0

Query: 94  TNLKAESKGKCPQTLNLLSHL------QWEPSDSESWKLNADASWNEKSSKGELGWAIRD 153
           TNLK +S  K    L+L+  +      QW+P  S SWKLN +A+W   ++ G +GW +RD
Sbjct: 54  TNLKGKSTNK---DLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRD 113

Query: 154 SEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTL 213
            +G +I    + +     I Y+E  AI EGL A       E  R  + +E D  +AI  L
Sbjct: 114 EKGEVIKASCRIIRAERNITYLEVMAICEGLRAI----RQEHCR-PIHLESDSLEAIHLL 173

Query: 214 NRESEDLSEMACVVDEIRRKVGAEQVVFSK-CPRLSNSLAHELAQAAQSH 257
           +R+ +D +E+  +++EI + +   ++V  +   R +N +AH LA+ A  +
Sbjct: 174 HRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAMEN 215

BLAST of Spg000346 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-09
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 0

Query: 120 DSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLE 179
           D  S KLN+ ASW+E++ KG + W I DS GS I +  K+L + W +K +E +A++EGL+
Sbjct: 2   DHLSSKLNSYASWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLK 61

Query: 180 AYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEI 225
            YL + E      + ++   F +    LN    DL E++ VVDEI
Sbjct: 62  TYLLIRETVSYSHRPII---FLELARILNNTHMDLIELSNVVDEI 103

BLAST of Spg000346 vs. NCBI nr
Match: XP_015382715.1 (uncharacterized protein LOC107175626 [Citrus sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-08
Identity = 47/144 (32.64%), Postives = 70/144 (48.61%), Query Frame = 0

Query: 111 LSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYME 170
           +S  +W P      KLN DA+ N K+ K  LG  +RDS G ++  G KQ+     + Y E
Sbjct: 260 VSQQRWSPPPKNVLKLNVDAATNNKNQKVGLGAVLRDSNGRVVAAGIKQVSFRKDVSYAE 319

Query: 171 ARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIR-RKVG 230
           A AI  GL+        E     L+VE D       +N      SE+  ++ EI+ +K  
Sbjct: 320 AEAIQWGLQI-----AKEAAATSLIVETDCKDVAELVNNTKGSRSEIFWIISEIQTQKRE 379

Query: 231 AEQVVFSKCPRLSNSLAHELAQAA 254
            +++ F+  PR  N+ AH LA+ A
Sbjct: 380 FQRIHFNFVPRFCNAHAHSLAKHA 398

BLAST of Spg000346 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis])

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-08
Identity = 48/149 (32.21%), Postives = 75/149 (50.34%), Query Frame = 0

Query: 115  QWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAI 174
            +W+P      KLN DA+ + K  K  LG  +RD+EG ++ VG KQ      +   EA AI
Sbjct: 1292 KWKPPSQNVLKLNVDAAVSTKDQKVGLGAIVRDAEGKILAVGIKQAQFRERVSLAEAEAI 1351

Query: 175  LEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGA-EQV 234
              GL+        + +   L+VE D  + +  LN      +E+  ++ ++RR+    +QV
Sbjct: 1352 HWGLQV-----ANQISSSSLIVESDCKEVVELLNNTKGSRTEIHWILSDVRRESKEFKQV 1411

Query: 235  VFSKCPRLSNSLAHELAQ-AAQSHGDFVW 262
             FS  PR  N+ AH LA+ A ++    VW
Sbjct: 1412 QFSFIPRTCNTYAHALAKFALRNSSTDVW 1435

BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 0

Query: 73  NHSKKPQVSDKHAAPSTTLWK-TNLKAESKGKCPQTLNLL-----SHLQWEPSDSESWKL 132
           NH        +H++ ST + + T    ES  +   +L++L     + L+WEP     W L
Sbjct: 22  NHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTL 81

Query: 133 NADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGE 192
           NADASW++ + +G +GW IR  +G ++  G + +     +K +EA AILEGL    N+G 
Sbjct: 82  NADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGV 141

Query: 193 YERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEI-RRKVGAEQVVFSKCPRLSNSL 252
                  L +E D  +    LNR+ EDL++   VV+EI   +   E + F+K  R +N  
Sbjct: 142 LR----PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGC 201

Query: 253 AHELAQAA 254
           AH LAQ A
Sbjct: 202 AHSLAQRA 205

BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-12
Identity = 55/170 (32.35%), Postives = 91/170 (53.53%), Query Frame = 0

Query: 94  TNLKAESKGKCPQTLNLLSHL------QWEPSDSESWKLNADASWNEKSSKGELGWAIRD 153
           TNLK +S  K    L+L+  +      QW+P  S SWKLN +A+W   ++ G +GW +RD
Sbjct: 54  TNLKGKSTNK---DLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRD 113

Query: 154 SEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTL 213
            +G +I    + +     I Y+E  AI EGL A       E  R  + +E D  +AI  L
Sbjct: 114 EKGEVIKASCRIIRAERNITYLEVMAICEGLRAI----RQEHCR-PIHLESDSLEAIHLL 173

Query: 214 NRESEDLSEMACVVDEIRRKVGAEQVVFSK-CPRLSNSLAHELAQAAQSH 257
           +R+ +D +E+  +++EI + +   ++V  +   R +N +AH LA+ A  +
Sbjct: 174 HRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAMEN 215

BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A5B7BU49 (RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041820 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-08
Identity = 52/150 (34.67%), Postives = 75/150 (50.00%), Query Frame = 0

Query: 116 WEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAIL 175
           W P     +KLN  ASW    S G +G  IRD +G +IG   KQ+     I + EA AIL
Sbjct: 52  WSPPREGIFKLNVHASWVLGESCGGIGGVIRDWKGEVIGGFAKQIRTCSRIDFAEALAIL 111

Query: 176 EGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRR-KVGAEQVV 235
            GL    ++G  +     L VE D    +  +    EDLSE+  V D I++ + G     
Sbjct: 112 HGLMFAKDVGLQD-----LSVEGDCLSVLIAIESSVEDLSELGHVFDHIKQCRDGFHSCD 171

Query: 236 FSKCPRLSNSLAHELAQAAQSHGDFVWFCD 265
           F    R +NS+AHE+A  A++  D V++ +
Sbjct: 172 FGHVRRAANSVAHEIAVFARAVNDEVFWLE 196

BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-07
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 94  TNLKAESKGKCP-QTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSL 153
           TNLK +SK   P + +   +  +W+P  S SWKLN DA+W   ++   +GW +RD +G +
Sbjct: 232 TNLKRKSKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEV 291

Query: 154 IGVGYKQLYKNWPIKYMEARAILEGLEA 181
           I  G + +     I Y+E  AI EGL A
Sbjct: 292 IKTGCRIIRAERNITYLEVMAICEGLRA 319

BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-07
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 94  TNLKAESKGKCP-QTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSL 153
           TNLK +SK   P + +   +  +W+P  S SWKLN DA+W   ++   +GW +RD +G +
Sbjct: 197 TNLKRKSKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEV 256

Query: 154 IGVGYKQLYKNWPIKYMEARAILEGLEA 181
           I  G + +     I Y+E  AI EGL A
Sbjct: 257 IKTGCRIIRAERNITYLEVMAICEGLRA 284

BLAST of Spg000346 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-05
Identity = 43/183 (23.50%), Postives = 80/183 (43.72%), Query Frame = 0

Query: 73  NHSK-KPQVSDKHAAPSTTLWKTNLKAESKGKCPQTLNLLSHLQWEPSDSESWKLNADAS 132
           NH++ K Q + + A   T  W  N     +    +  +   + +W P   +  K N DAS
Sbjct: 61  NHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPSRNTKWSPPGRDKLKCNYDAS 120

Query: 133 WNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTR 192
            +E+++   LGW +R+S+G++I  G  +       +  E   ++  ++A    G      
Sbjct: 121 HHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWAIQASYGFGHK---- 180

Query: 193 FKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGA-EQVVFSKCPRLSNSLAHELA 252
            K++ E D       +N +S +   +   +D I+  + + E + FS   R  N  A  LA
Sbjct: 181 -KVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEFSFKHREQNGCADFLA 237

Query: 253 QAA 254
           + A
Sbjct: 241 KQA 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.12.4e-1534.04uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143535.11.6e-1132.35uncharacterized protein LOC111013412 [Momordica charantia][more]
KAG6599977.17.5e-0939.05hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_015382715.11.3e-0832.64uncharacterized protein LOC107175626 [Citrus sinensis][more]
XP_006491472.11.7e-0832.21uncharacterized protein LOC102626455 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV91.2e-1534.04uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CP267.8e-1232.35uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A5B7BU492.4e-0834.67RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=... [more]
A0A6J1DL643.4e-0738.64uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DQC93.4e-0738.64uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
AT5G65005.11.8e-0523.50Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 127..253
e-value: 1.7E-14
score: 53.7
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 122..255
e-value: 9.0E-10
score: 40.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..87
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 104..264
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 126..250
e-value: 1.09822E-11
score: 58.8648
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 124..256

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg000346.1Spg000346.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity