Spg000346 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGAAGAAGAGGGAAAAACTTGGTGGACACTATAATATGGAATCAAGACCCTAAAGGAGCATTCACGGTTAAGAGTGCTTACCACTTGGCTAGAAACATAAGCCTAAACCCCAGGGCTTCAGAATCGGACTCCTCATTGACCAAAGCGGTGTGGAGATCAATATGGAACGCAAACTGCATCCCGAGGGCCAAAATCATAACTTGGAAAATCCTTAAGGACATAATCCCTACCAAAGTCAATATTTATAAAAAAAGGCGTGGACTCTAATACTTTGTGTTGTGTGTGCAGGTCGAAGAAGGAGAGCACGGTGCATCTATTCTGGGAGTGTAAGTTCGCCAAGAAAATTTGGAATGAATTTTTCCTTAATTCCTATCTATTCTTGAACAAATGCAGAGTTGGTTGGAGCCCGATTGATTGTTGGGATGATATGCGAAGAGTTCTCAGCAAAGCAGAATTGAACAGAGCAATCATAGTAAAAAACCCCAGGTCTCAGACAAACATGCAGCACCATCAACAACCTTATGGAAGACAAACCTGAAGGCGGAGAGCAAAGGCAAATGTCCTCAAACCCTAAACCTCCTGAGTCACCTCCAATGGGAGCCGTCGGACTCGGAGAGCTGGAAGTTGAATGCAGATGCGTCTTGGAACGAGAAATCAAGCAAAGGTGAGCTGGGATGGGCCATCCGTGACTCCGAAGGGTCTTTGATCGGAGTGGGCTACAAGCAATTGTACAAGAACTGGCCGATTAAATATATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATATGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTCGTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGGCGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTGTTGGTGTACCTAATTTAGCTTCTTAA ATGCGAAGAAGAGGGAAAAACTTGGTGGACACTATAATATGGAATCAAGACCCTAAAGGAGCATTCACGGTTAAGAGTGCTTACCACTTGGCTAGAAACATAAGCCTAAACCCCAGGGCTTCAGAATCGGACTCCTCATTGACCAAAGCGGTCGAAGAAGGAGAGCACGGTGCATCTATTCTGGGAGTTTCTCAGCAAAGCAGAATTGAACAGAGCAATCATAGTAAAAAACCCCAGGTCTCAGACAAACATGCAGCACCATCAACAACCTTATGGAAGACAAACCTGAAGGCGGAGAGCAAAGGCAAATGTCCTCAAACCCTAAACCTCCTGAGTCACCTCCAATGGGAGCCGTCGGACTCGGAGAGCTGGAAGTTGAATGCAGATGCGTCTTGGAACGAGAAATCAAGCAAAGGTGAGCTGGGATGGGCCATCCGTGACTCCGAAGGGTCTTTGATCGGAGTGGGCTACAAGCAATTGTACAAGAACTGGCCGATTAAATATATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATATGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTCGTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGGCGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTGTTGGTGTACCTAATTTAGCTTCTTAA ATGCGAAGAAGAGGGAAAAACTTGGTGGACACTATAATATGGAATCAAGACCCTAAAGGAGCATTCACGGTTAAGAGTGCTTACCACTTGGCTAGAAACATAAGCCTAAACCCCAGGGCTTCAGAATCGGACTCCTCATTGACCAAAGCGGTCGAAGAAGGAGAGCACGGTGCATCTATTCTGGGAGTTTCTCAGCAAAGCAGAATTGAACAGAGCAATCATAGTAAAAAACCCCAGGTCTCAGACAAACATGCAGCACCATCAACAACCTTATGGAAGACAAACCTGAAGGCGGAGAGCAAAGGCAAATGTCCTCAAACCCTAAACCTCCTGAGTCACCTCCAATGGGAGCCGTCGGACTCGGAGAGCTGGAAGTTGAATGCAGATGCGTCTTGGAACGAGAAATCAAGCAAAGGTGAGCTGGGATGGGCCATCCGTGACTCCGAAGGGTCTTTGATCGGAGTGGGCTACAAGCAATTGTACAAGAACTGGCCGATTAAATATATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATATGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTCGTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGGCGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTGTTGGTGTACCTAATTTAGCTTCTTAA MRRRGKNLVDTIIWNQDPKGAFTVKSAYHLARNISLNPRASESDSSLTKAVEEGEHGASILGVSQQSRIEQSNHSKKPQVSDKHAAPSTTLWKTNLKAESKGKCPQTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGAEQVVFSKCPRLSNSLAHELAQAAQSHGDFVWFCDRSLPIDREDEVFWRKNVFPSWFYEIITNGVGVPNLAS Homology
BLAST of Spg000346 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia]) HSP 1 Score: 94.0 bits (232), Expect = 2.4e-15 Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 0
BLAST of Spg000346 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia]) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-11 Identity = 55/170 (32.35%), Postives = 91/170 (53.53%), Query Frame = 0
BLAST of Spg000346 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 72.4 bits (176), Expect = 7.5e-09 Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 0
BLAST of Spg000346 vs. NCBI nr
Match: XP_015382715.1 (uncharacterized protein LOC107175626 [Citrus sinensis]) HSP 1 Score: 71.6 bits (174), Expect = 1.3e-08 Identity = 47/144 (32.64%), Postives = 70/144 (48.61%), Query Frame = 0
BLAST of Spg000346 vs. NCBI nr
Match: XP_006491472.1 (uncharacterized protein LOC102626455 [Citrus sinensis]) HSP 1 Score: 71.2 bits (173), Expect = 1.7e-08 Identity = 48/149 (32.21%), Postives = 75/149 (50.34%), Query Frame = 0
BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15 Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 0
BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 7.8e-12 Identity = 55/170 (32.35%), Postives = 91/170 (53.53%), Query Frame = 0
BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A5B7BU49 (RNase H domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041820 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.4e-08 Identity = 52/150 (34.67%), Postives = 75/150 (50.00%), Query Frame = 0
BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.4e-07 Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Spg000346 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.4e-07 Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Spg000346 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 47.8 bits (112), Expect = 1.8e-05 Identity = 43/183 (23.50%), Postives = 80/183 (43.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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