Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACGAGAAGGAAAAATTCGCCGCCATTCACGGCGAGGAGGAGGAGAACGAGGAGGAGGAGGAGGTGAAGATGGAGACGTTCTTCGCTCTGGTGCGGAACTTCAAGGAAATGCGTGATCGGAGGAGAAAGGAGCTGATCGGCGACGACGACGACGAAACCGAGGCGTCGGAGAAGAAGAAGAAGAAGATGAAGACGACGCATCAGAACCGATCGGCTTGGATTCCGACGTTTGAAAGGGAGGATTTCGATGAAGATTTTCAGGTTGGAGGGCCTTCTCTGGTACTTCCGAAACCCTGCAACCTCATTAAGGAAGAGATAACGACGACGACGAAGAAGAAGATTAAAAGTGAAGACGATCGTCTGGATCTTAAGCTCGCCCTGTAG
mRNA sequence
ATGGAAAACGAGAAGGAAAAATTCGCCGCCATTCACGGCGAGGAGGAGGAGAACGAGGAGGAGGAGGAGGTGAAGATGGAGACGTTCTTCGCTCTGGTGCGGAACTTCAAGGAAATGCGTGATCGGAGGAGAAAGGAGCTGATCGGCGACGACGACGACGAAACCGAGGCGTCGGAGAAGAAGAAGAAGAAGATGAAGACGACGCATCAGAACCGATCGGCTTGGATTCCGACGTTTGAAAGGGAGGATTTCGATGAAGATTTTCAGGTTGGAGGGCCTTCTCTGGTACTTCCGAAACCCTGCAACCTCATTAAGGAAGAGATAACGACGACGACGAAGAAGAAGATTAAAAGTGAAGACGATCGTCTGGATCTTAAGCTCGCCCTGTAG
Coding sequence (CDS)
ATGGAAAACGAGAAGGAAAAATTCGCCGCCATTCACGGCGAGGAGGAGGAGAACGAGGAGGAGGAGGAGGTGAAGATGGAGACGTTCTTCGCTCTGGTGCGGAACTTCAAGGAAATGCGTGATCGGAGGAGAAAGGAGCTGATCGGCGACGACGACGACGAAACCGAGGCGTCGGAGAAGAAGAAGAAGAAGATGAAGACGACGCATCAGAACCGATCGGCTTGGATTCCGACGTTTGAAAGGGAGGATTTCGATGAAGATTTTCAGGTTGGAGGGCCTTCTCTGGTACTTCCGAAACCCTGCAACCTCATTAAGGAAGAGATAACGACGACGACGAAGAAGAAGATTAAAAGTGAAGACGATCGTCTGGATCTTAAGCTCGCCCTGTAG
Protein sequence
MENEKEKFAAIHGEEEENEEEEEVKMETFFALVRNFKEMRDRRRKELIGDDDDETEASEKKKKKMKTTHQNRSAWIPTFEREDFDEDFQVGGPSLVLPKPCNLIKEEITTTTKKKIKSEDDRLDLKLAL
Homology
BLAST of Sgr029564 vs. NCBI nr
Match:
XP_022151003.1 (protein NIM1-INTERACTING 1 [Momordica charantia])
HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24
Identity = 81/139 (58.27%), Postives = 93/139 (66.91%), Query Frame = 0
Query: 1 MENEKEKFAAIHGEEEENEEEEEVKMETFFALVRNFKEMRDRRRKEL---IGDDDDETEA 60
MENE + AA EEEEE+KME FFAL+RNFKEMRDRRRKEL IGD +
Sbjct: 1 MENENLRPAA------AEEEEEEMKMEAFFALLRNFKEMRDRRRKELTTMIGDGGE---- 60
Query: 61 SEKKKKKMKTTHQNRSAWIPTFEREDFDEDFQVGGPSLVLPKPCNLIKEE-------ITT 120
+EKK+KKMKT S WIPTF REDFDEDFQV GP VLPKPCNLIKE+
Sbjct: 61 TEKKRKKMKTA---PSTWIPTFLREDFDEDFQVRGPPPVLPKPCNLIKEDTPPPPLPAAV 120
Query: 121 TTKKKIKSEDDRLDLKLAL 130
KK +K++++ LDL LAL
Sbjct: 121 AKKKNMKNDEECLDLNLAL 126
BLAST of Sgr029564 vs. NCBI nr
Match:
XP_038898983.1 (protein NIM1-INTERACTING 1-like [Benincasa hispida])
HSP 1 Score: 117.5 bits (293), Expect = 8.7e-23
Identity = 77/141 (54.61%), Postives = 95/141 (67.38%), Query Frame = 0
Query: 1 MENEKEKFAAIHGEEEENEEEEEVKMETFFALVRNFKEMRDRRRKELIGDDDDETEASEK 60
MENEK + A E EEEEE +ME FFALVRNFKEMRDRRRKEL+ +++E A EK
Sbjct: 1 MENEKLQPA----PERIAEEEEEEEMEMFFALVRNFKEMRDRRRKELMIGEEEEIAAEEK 60
Query: 61 KKKKMKTTH---QNRSAWIPTFEREDFDEDFQVGGPSLVLP-KPCNLIKEEITTTT---- 120
++K+MK+ +NRS WIP FEREDFDE+FQV G +LP KP NL+KE+ +
Sbjct: 61 RRKRMKSAPEAVENRSTWIPKFEREDFDEEFQVRGQGFILPNKPYNLVKEDTSAAAASTA 120
Query: 121 ----KKKIKSEDDRLDLKLAL 130
KK +K+ DD LDL LAL
Sbjct: 121 AMKKKKNVKNGDDCLDLNLAL 137
BLAST of Sgr029564 vs. NCBI nr
Match:
KAG7025612.1 (hypothetical protein SDJN02_12109, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 75/128 (58.59%), Postives = 91/128 (71.09%), Query Frame = 0
Query: 9 AAIHGEEEENEEEEEVKMETFFALVRNFKEMRDRRRKEL-IGDDDDETEASEKKKKKMKT 68
AA+ GEE EEEEE+KME FFALVRNFKEMRD+RRKEL IG + ++ A+E +K+KMKT
Sbjct: 16 AAVDGEE---EEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCNGEKAAAAEMRKRKMKT 75
Query: 69 THQNRSAWIPTFEREDFDEDFQVGGPSLVLPKPCNLIKEE------ITTTTKKKIKSEDD 128
+NRSAWIP FEREDFDE+FQV GP+ KEE T KKK+K+E+D
Sbjct: 76 V-ENRSAWIPRFEREDFDEEFQVRGPA----------KEEAAAAAIATAKKKKKVKNEED 129
Query: 129 RLDLKLAL 130
LDL L+L
Sbjct: 136 ILDLNLSL 129
BLAST of Sgr029564 vs. NCBI nr
Match:
XP_023514605.1 (protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 115.9 bits (289), Expect = 2.5e-22
Identity = 73/124 (58.87%), Postives = 89/124 (71.77%), Query Frame = 0
Query: 9 AAIHGEEEENEEEEEVKMETFFALVRNFKEMRDRRRKEL-IGDDDDETEASEKKKKKMKT 68
AA+ GE EEEEE+KME FFALVRNFKEMRD+RRKEL IG D ++ A+E +K+KMKT
Sbjct: 16 AAVDGE----EEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAAAAEMRKRKMKT 75
Query: 69 THQNRSAWIPTFEREDFDEDFQVGGPSLVLPKPCNLIKEEITTTT--KKKIKSEDDRLDL 128
+NRSAWIP FEREDFDE+FQ+ GP+ KEE KKK+K+E+D LDL
Sbjct: 76 V-ENRSAWIPRFEREDFDEEFQLRGPA----------KEEAAAAAKKKKKVKNEEDILDL 124
Query: 129 KLAL 130
L+L
Sbjct: 136 NLSL 124
BLAST of Sgr029564 vs. NCBI nr
Match:
XP_023547822.1 (uncharacterized protein LOC111806674 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 114.4 bits (285), Expect = 7.4e-22
Identity = 75/138 (54.35%), Postives = 95/138 (68.84%), Query Frame = 0
Query: 1 MENEK-EKFAAIHGEEEENEEEEEVKMETFFALVRNFKEMRDRRRKELIGDDDDETEASE 60
MEN+K + EEEE E EEEV+METF+ALVRNFKE+RDR RKE++ + ET A+E
Sbjct: 1 MENQKRQPPRGTIAEEEEAEAEEEVEMETFYALVRNFKEIRDRCRKEVVNGEGGET-AAE 60
Query: 61 KKKKKMKTTH--QNRSAWIPTFEREDFDEDFQVGGPSLVLPKPCNLIKEEITTTT----- 120
K +K+MKTT QN+S+WI FEREDFDED QVGG ++ LPK C L+KE+
Sbjct: 61 KTRKRMKTTETSQNQSSWILRFEREDFDEDLQVGGTAVELPKRCCLVKEDTPVAAPPSMK 120
Query: 121 -KKKIKSEDDRLDLKLAL 130
+KK+ S D LDL L+L
Sbjct: 121 KEKKVASGVDCLDLNLSL 137
BLAST of Sgr029564 vs. ExPASy TrEMBL
Match:
A0A6J1DAZ5 (protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 81/139 (58.27%), Postives = 93/139 (66.91%), Query Frame = 0
Query: 1 MENEKEKFAAIHGEEEENEEEEEVKMETFFALVRNFKEMRDRRRKEL---IGDDDDETEA 60
MENE + AA EEEEE+KME FFAL+RNFKEMRDRRRKEL IGD +
Sbjct: 1 MENENLRPAA------AEEEEEEMKMEAFFALLRNFKEMRDRRRKELTTMIGDGGE---- 60
Query: 61 SEKKKKKMKTTHQNRSAWIPTFEREDFDEDFQVGGPSLVLPKPCNLIKEE-------ITT 120
+EKK+KKMKT S WIPTF REDFDEDFQV GP VLPKPCNLIKE+
Sbjct: 61 TEKKRKKMKTA---PSTWIPTFLREDFDEDFQVRGPPPVLPKPCNLIKEDTPPPPLPAAV 120
Query: 121 TTKKKIKSEDDRLDLKLAL 130
KK +K++++ LDL LAL
Sbjct: 121 AKKKNMKNDEECLDLNLAL 126
BLAST of Sgr029564 vs. ExPASy TrEMBL
Match:
A0A6J1H831 (protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 3.6e-22
Identity = 71/120 (59.17%), Postives = 86/120 (71.67%), Query Frame = 0
Query: 17 ENEEEEEVKMETFFALVRNFKEMRDRRRKEL-IGDDDDETEASEKKKKKMKTTHQNRSAW 76
+ EEEEE+KME FFALVRNFKEMRD+RRKEL IG D ++ A+E +K+KMKT +NRSAW
Sbjct: 23 DGEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAAAAEMRKRKMKTV-ENRSAW 82
Query: 77 IPTFEREDFDEDFQVGGPSLVLPKPCNLIKEE------ITTTTKKKIKSEDDRLDLKLAL 130
IP FEREDFDE+FQV GP+ KEE T KKK+K+E+D LDL L+L
Sbjct: 83 IPRFEREDFDEEFQVRGPA----------KEEAAAAAIATAKKKKKVKNEEDILDLNLSL 131
BLAST of Sgr029564 vs. ExPASy TrEMBL
Match:
A0A6J1KR57 (protein NIM1-INTERACTING 1 OS=Cucurbita maxima OX=3661 GN=LOC111497915 PE=3 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 6.1e-22
Identity = 69/116 (59.48%), Postives = 84/116 (72.41%), Query Frame = 0
Query: 15 EEENEEEEEVKMETFFALVRNFKEMRDRRRKEL-IGDDDDETEASEKKKKKMKTTHQNRS 74
+ E E+EEE+KME FF LVRNFKEMRD+RRKEL I D ++ A+E +KKKMKT +NRS
Sbjct: 19 DREEEKEEEMKMEAFFDLVRNFKEMRDQRRKELMIVCDGEKAAAAEMRKKKMKTV-ENRS 78
Query: 75 AWIPTFEREDFDEDFQVGGPSLVLPKPCNLIKEEITTTTKKKIKSEDDRLDLKLAL 130
AWIP FEREDFDE+FQV GP+ KEE KKK+K+E+D LDL L+L
Sbjct: 79 AWIPRFEREDFDEEFQVRGPA----------KEEAAAAKKKKVKNEEDILDLNLSL 123
BLAST of Sgr029564 vs. ExPASy TrEMBL
Match:
A0A6J1JVD5 (uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189 PE=3 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 5.2e-21
Identity = 73/136 (53.68%), Postives = 93/136 (68.38%), Query Frame = 0
Query: 1 MENEKEKFAAIHGEEEENEEEEEVKMETFFALVRNFKEMRDRRRKELIGDDDDETEASEK 60
MEN+K + E EEEEEV+ME F+ALVRNFKE+RDR RKE++ + DET A+EK
Sbjct: 1 MENQKRQPPR---ETIAEEEEEEVEMEKFYALVRNFKEIRDRWRKEVVNGEGDET-AAEK 60
Query: 61 KKKKMKTTH--QNRSAWIPTFEREDFDEDFQVGGPSLVLPKPCNLIKEEITTTT-----K 120
+K+MKTT QN+S+WI FEREDFDED QVGG ++ LPK C L+KE+ +
Sbjct: 61 TRKRMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCCLVKEDTPVAAAPLKKE 120
Query: 121 KKIKSEDDRLDLKLAL 130
KK+ S D LDL L+L
Sbjct: 121 KKVASGVDCLDLNLSL 132
BLAST of Sgr029564 vs. ExPASy TrEMBL
Match:
A0A0A0K5V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 73/144 (50.69%), Postives = 92/144 (63.89%), Query Frame = 0
Query: 1 MENEKEKFAAIHGEEEENEEEEEVKMETFFALVRNFKEMRDRRRKEL-IGDDDDETE--A 60
MEN K + + E+ E+EE ME FFALVR+ KEMRD+RRKEL IG ++ E E A
Sbjct: 1 MENGKLQPSPDTTAEDSLEDEE---MERFFALVRSLKEMRDQRRKELNIGQEEGEEEIAA 60
Query: 61 SEKKKKKMKTTH--QNRSAWIPTFEREDFDEDFQVGGPSLVLPKP-CNLIKEEI----TT 120
EK++K+M+ +NRS WIP FEREDFDE+FQ S + P P CNL+K + TT
Sbjct: 61 GEKRRKRMRAAEMVENRSTWIPKFEREDFDEEFQ--ALSTLPPNPCCNLVKRDTTAASTT 120
Query: 121 TT-----KKKIKSEDDRLDLKLAL 130
TT KKK+K+ D LDL LAL
Sbjct: 121 TTAPMKNKKKVKNGDVSLDLNLAL 139
BLAST of Sgr029564 vs. TAIR 10
Match:
AT1G02450.1 (NIM1-interacting 1 )
HSP 1 Score: 42.0 bits (97), Expect = 4.3e-04
Identity = 41/119 (34.45%), Postives = 61/119 (51.26%), Query Frame = 0
Query: 16 EENEEEEEVKMETFFALVRNFKEMRDRRRKELIGDDDDETEASEKKKKKMKTTHQNRSA- 75
E+ EEEEE K++TFF L+++++E R RRR+EL A + K+ RS
Sbjct: 36 EDEEEEEEKKIDTFFKLIKHYQEARKRRREEL---------AENSGVVRRKSNGGERSGI 95
Query: 76 WIPTFEREDFDEDFQVGGPSLVLPKPCNLIKEEITTTTKK----KIKSEDDRLDLKLAL 130
+P F+ EDF + P L+ KEE T ++ + ++ED LDL LAL
Sbjct: 96 VVPAFQPEDFSQCRTGLKPPLMFVSD---HKEENTKVEQEEDQTEERNEDKALDLNLAL 142
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022151003.1 | 4.6e-24 | 58.27 | protein NIM1-INTERACTING 1 [Momordica charantia] | [more] |
XP_038898983.1 | 8.7e-23 | 54.61 | protein NIM1-INTERACTING 1-like [Benincasa hispida] | [more] |
KAG7025612.1 | 1.9e-22 | 58.59 | hypothetical protein SDJN02_12109, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_023514605.1 | 2.5e-22 | 58.87 | protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo] | [more] |
XP_023547822.1 | 7.4e-22 | 54.35 | uncharacterized protein LOC111806674 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DAZ5 | 2.2e-24 | 58.27 | protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 S... | [more] |
A0A6J1H831 | 3.6e-22 | 59.17 | protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV... | [more] |
A0A6J1KR57 | 6.1e-22 | 59.48 | protein NIM1-INTERACTING 1 OS=Cucurbita maxima OX=3661 GN=LOC111497915 PE=3 SV=1 | [more] |
A0A6J1JVD5 | 5.2e-21 | 53.68 | uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189... | [more] |
A0A0A0K5V7 | 1.1e-15 | 50.69 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G02450.1 | 4.3e-04 | 34.45 | NIM1-interacting 1 | [more] |