Sgr028887 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr028887
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	glycine-rich RNA-binding protein GRP1A-like
Location	tig00153210: 1216025 .. 1216351 (+)
RNA-Seq Expression	Sgr028887
Synteny	Sgr028887

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCAGAGTCTAATTACCACCAGAAAACTTACACAGAAACATATGGCAAAGATGGGGTTACTAACCAGATTGGCACAAGAAACGCTGCAAGTGCAACCACCGTGTCTCATGGTGTTGGTCATGGAAGTGCAGCCGGCGGAGATAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGTGCGGTTATCCCTGTTTATGCAGCTGGTTCGGCACATCACCGCCAGGGCCAACGCCACAATGCAGGAAATCGCTATGAGAACGACATGGGACTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCACATCTGTATAGAGTTTTCTGA

mRNA sequence

ATGCATGCAGAGTCTAATTACCACCAGAAAACTTACACAGAAACATATGGCAAAGATGGGGTTACTAACCAGATTGGCACAAGAAACGCTGCAAGTGCAACCACCGTGTCTCATGGTGTTGGTCATGGAAGTGCAGCCGGCGGAGATAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGTGCGGTTATCCCTGTTTATGCAGCTGGTTCGGCACATCACCGCCAGGGCCAACGCCACAATGCAGGAAATCGCTATGAGAACGACATGGGACTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCACATCTGTATAGAGTTTTCTGA

Coding sequence (CDS)

ATGCATGCAGAGTCTAATTACCACCAGAAAACTTACACAGAAACATATGGCAAAGATGGGGTTACTAACCAGATTGGCACAAGAAACGCTGCAAGTGCAACCACCGTGTCTCATGGTGTTGGTCATGGAAGTGCAGCCGGCGGAGATAATGGTGGTGGCAGTAGACCTCATACAGGAGGAGGTGCGGTTATCCCTGTTTATGCAGCTGGTTCGGCACATCACCGCCAGGGCCAACGCCACAATGCAGGAAATCGCTATGAGAACGACATGGGACTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCACATCTGTATAGAGTTTTCTGA

Protein sequence

MHAESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGVGHGSAAGGDNGGGSRPHTGGGAVIPVYAAGSAHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF

Homology

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BLAST of Sgr028887 vs. NCBI nr
Match: XP_038892711.1 (uncharacterized protein LOC120081693 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 6.2e-30
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGVGHGS--AAGGDNGGGSRPHTGGG 63
           ESNY QKTYTE   KDG+TNQI  R +A+  TVS+G+G GS  A GG+NGGGSRPH GGG
Sbjct: 33  ESNYQQKTYTEKRSKDGITNQIARRYSATEITVSNGIGQGSAVAGGGENGGGSRPHNGGG 92

Query: 64  -AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
            AVIPVYAAGS  AHHRQG+ HNAGNR+EN+ GLLVAAVLAAIAHLY VF
Sbjct: 93  TAVIPVYAAGSAQAHHRQGRPHNAGNRHENNRGLLVAAVLAAIAHLYGVF 142

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BLAST of Sgr028887 vs. NCBI nr
Match: XP_023517064.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG7032020.1 hypothetical protein SDJN02_06062 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGVGHGSAA-GGDNGGGSRPHTGGG- 63
           ESNYHQKT  E +GKDGVTN+I +  +A A TVS G+GHGSAA GG+NGGG RP  GGG 
Sbjct: 33  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 92

Query: 64  -AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
            AVIPVYAAGS  AHHRQG+  NAGN YEN+MGLLVA+VLAAIAHL+ VF
Sbjct: 93  AAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF 142

[Close]

BLAST of Sgr028887 vs. NCBI nr
Match: KAG6601227.1 (hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGVGHGSAA-GGDNGGGSRPHTGGG- 63
           ESNYHQKT  E +GKDGVTN+I +  +A A TVS G+GHGSAA GG+NGGG RP  GGG 
Sbjct: 24  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 83

Query: 64  -AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
            AVIPVYAAGS  AHHRQG+  NAGN YEN+MGLLVA+VLAAIAHL+ VF
Sbjct: 84  AAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIAHLHLVF 133

[Close]

BLAST of Sgr028887 vs. NCBI nr
Match: XP_022957462.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata])

HSP 1 Score: 134.8 bits (338), Expect = 4.4e-28
Identity = 78/110 (70.91%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGVGHGSAA-GGDNGGGSRPHTGGG- 63
           ESNYHQKT  E +GKDGVTN+I +  +A A TVS G+GHGSAA GG+NGGG RP  GGG 
Sbjct: 33  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 92

Query: 64  -AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
            AVIPVYAAGS  AHHRQG+  NAGN YEN+MGLLVA+VLAAI HL+ VF
Sbjct: 93  AAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIVHLHLVF 142

[Close]

BLAST of Sgr028887 vs. NCBI nr
Match: XP_022987717.1 (uncharacterized protein LOC111485159 [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27
Identity = 77/110 (70.00%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGVGHGSAA-GGDNGGGSRPHTGGG- 63
           E NYHQKT  E +G+DGVTN+I +  +A A TVS G+GHGSAA GG+NGGG RP  GGG 
Sbjct: 33  EPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 92

Query: 64  -AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
            AVIPVYAAGS  AHHRQG+  NAGN YEN+MGLLVA+VLAAIAHL+ VF
Sbjct: 93  AAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLVASVLAAIAHLHLVF 142

[Close]

BLAST of Sgr028887 vs. ExPASy TrEMBL
Match: A0A6J1GZ71 (glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC111458855 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 78/110 (70.91%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGVGHGSAA-GGDNGGGSRPHTGGG- 63
           ESNYHQKT  E +GKDGVTN+I +  +A A TVS G+GHGSAA GG+NGGG RP  GGG 
Sbjct: 33  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 92

Query: 64  -AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
            AVIPVYAAGS  AHHRQG+  NAGN YEN+MGLLVA+VLAAI HL+ VF
Sbjct: 93  AAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAIVHLHLVF 142

[Close]

BLAST of Sgr028887 vs. ExPASy TrEMBL
Match: A0A6J1JB47 (uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 77/110 (70.00%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGVGHGSAA-GGDNGGGSRPHTGGG- 63
           E NYHQKT  E +G+DGVTN+I +  +A A TVS G+GHGSAA GG+NGGG RP  GGG 
Sbjct: 33  EPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGG 92

Query: 64  -AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
            AVIPVYAAGS  AHHRQG+  NAGN YEN+MGLLVA+VLAAIAHL+ VF
Sbjct: 93  AAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLVASVLAAIAHLHLVF 142

[Close]

BLAST of Sgr028887 vs. ExPASy TrEMBL
Match: A0A5A7SUI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001940 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 79/113 (69.91%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGV-----GHGSAAGGDNGGGSRPHT 63
           ESNY QKTYT   GK GVTNQI  R +ASA TVS+ +     G  +A GG+NGGGSRPHT
Sbjct: 34  ESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRRANGGAAAAGGGENGGGSRPHT 93

Query: 64  GGG-AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
           GGG AVIPVYAAGS  A HRQG+ HNAGN YEN+ GLLVAAVLAAIAHL RV+
Sbjct: 94  GGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAAVLAAIAHLCRVY 146

[Close]

BLAST of Sgr028887 vs. ExPASy TrEMBL
Match: A0A1S3BFU8 (uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 79/113 (69.91%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSHGV-----GHGSAAGGDNGGGSRPHT 63
           ESNY QKTYT   GK GVTNQI  R +ASA TVS+ +     G  +A GG+NGGGSRPHT
Sbjct: 34  ESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRRANGGAAAAGGGENGGGSRPHT 93

Query: 64  GGG-AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
           GGG AVIPVYAAGS  A HRQG+ HNAGN YEN+ GLLVAAVLAAIAHL RV+
Sbjct: 94  GGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAAVLAAIAHLCRVY 146

[Close]

BLAST of Sgr028887 vs. ExPASy TrEMBL
Match: A0A0A0KUR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 80/120 (66.67%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 4   ESNYHQKTYTETYGKDGVTNQIGTRNAASATTVSH------------GVGHGSAAGGDNG 63
           ESNY QKTYT+ +GK GVTNQI  R ++SA TVS+            G G  +AAGG   
Sbjct: 35  ESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGGGGGSGSAAAAGGGEN 94

Query: 64  GGSRPHTGGG-AVIPVYAAGS--AHHRQGQRHNAGNRYENDMGLLVAAVLAAIAHLYRVF 109
           GGSRP TGGG AVIPVYAAGS  AHHRQG+ HNAGN YEN+MGLLVAAVLAAIAHL RVF
Sbjct: 95  GGSRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLLVAAVLAAIAHLCRVF 154

The following BLAST results are available for this feature:

BLAST of Sgr028887 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892711.1	6.2e-30	73.64	uncharacterized protein LOC120081693 [Benincasa hispida]	[more]
XP_023517064.1	1.5e-28	71.82	glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG703...	[more]
KAG6601227.1	1.5e-28	71.82	hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022957462.1	4.4e-28	70.91	glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]	[more]
XP_022987717.1	2.2e-27	70.00	uncharacterized protein LOC111485159 [Cucurbita maxima]	[more]

BLAST of Sgr028887 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr028887 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZ71	2.1e-28	70.91	glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JB47	1.1e-27	70.00	uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159...	[more]
A0A5A7SUI0	1.2e-26	69.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFU8	1.2e-26	69.91	uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=...	[more]
A0A0A0KUR6	1.5e-26	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1	[more]

BLAST of Sgr028887 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr028887.1	Sgr028887.1	mRNA