Sgr025993 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr025993
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	CCHC-type domain-containing protein
Location	tig00153017: 2505614 .. 2505847 (+)
RNA-Seq Expression	Sgr025993
Synteny	Sgr025993

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGCAAAATGCTTAGCAAACAGGTGGAGAATCTAAAGCTGACTGAGGAAGAGGGAGGAGTTGTTGAAATCACTGACGATGAATTAGATGAATCTGAAAAAAGCATCAAGAACCTGGTTTGCAAAATTCTCACCTCAAAAAAGGTAAATGTGGAAATATTCAGAACTATGATACCAAAAATTTGGAATGTGGAGGAAGATATTCAGATCGAAAAAGTTGGACGATATTGA

mRNA sequence

ATGGAAGGCAAAATGCTTAGCAAACAGGTGGAGAATCTAAAGCTGACTGAGGAAGAGGGAGGAGTTGTTGAAATCACTGACGATGAATTAGATGAATCTGAAAAAAGCATCAAGAACCTGGTTTGCAAAATTCTCACCTCAAAAAAGGTAAATGTGGAAATATTCAGAACTATGATACCAAAAATTTGGAATGTGGAGGAAGATATTCAGATCGAAAAAGTTGGACGATATTGA

Coding sequence (CDS)

ATGGAAGGCAAAATGCTTAGCAAACAGGTGGAGAATCTAAAGCTGACTGAGGAAGAGGGAGGAGTTGTTGAAATCACTGACGATGAATTAGATGAATCTGAAAAAAGCATCAAGAACCTGGTTTGCAAAATTCTCACCTCAAAAAAGGTAAATGTGGAAATATTCAGAACTATGATACCAAAAATTTGGAATGTGGAGGAAGATATTCAGATCGAAAAAGTTGGACGATATTGA

Protein sequence

MEGKMLSKQVENLKLTEEEGGVVEITDDELDESEKSIKNLVCKILTSKKVNVEIFRTMIPKIWNVEEDIQIEKVGRY

Homology

[Close]

BLAST of Sgr025993 vs. NCBI nr
Match: XP_022143536.1 (uncharacterized protein LOC111013413 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 34/78 (43.59%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MEGKMLSKQVENLKLT-EEEGGVVEITDDELDESEKSIK-NLVCKILTSKKVNVEIFRTM 60
          M  ++LS+QVE LKLT EE+G + ++ +DE+++ +K  + +LVCK+LT K +  E+F+ M
Sbjct: 1  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNM 60

Query: 61 IPKIWNVEEDIQIEKVGR 77
          +P+IW V  +++IE VG+
Sbjct: 61 MPRIW-VNVNVKIESVGK 77

[Close]

BLAST of Sgr025993 vs. NCBI nr
Match: KAG6591872.1 (hypothetical protein SDJN03_14218, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 9.8e-06
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MEGKMLSKQVENLKLT-EEEGGVVEITDDELDESEKSIKNL-VCKILTSKKVNVEIFRTM 60
          ME    SKQ+  LKLT EEEG VV+  D+++DES++ ++N   CKILT+K +NV++ +T+
Sbjct: 1  MEEDQFSKQLGKLKLTEEEEGKVVDAEDNDIDESDEVLENASACKILTNKIINVKVVKTL 60

Query: 61 IPKIWNVEEDI 70
          +PKI N+ ++I
Sbjct: 61 MPKICNLWKEI 71

[Close]

BLAST of Sgr025993 vs. NCBI nr
Match: TXG64847.1 (hypothetical protein EZV62_011841 [Acer yangbiense])

HSP 1 Score: 57.8 bits (138), Expect = 4.9e-05
Identity = 30/76 (39.47%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  MEGKMLSKQVENLKLTEEEGGVVEITDD-ELDESEKSIKNLVCKILTSKKVNVEIFRTMI 60
          M    L++  ENL LT+E+G ++EI ++ EL+  E    NLV ++L+ KKVN E+F+++I
Sbjct: 1  MSAADLAELCENLSLTDEDGAILEIIEEAELEGEEDVDHNLVGRVLSGKKVNKEVFKSLI 60

Query: 61 PKIWNVEEDIQIEKVG 76
           ++WN   +++IE +G
Sbjct: 61 DQLWNPFGNVEIELIG 76

[Close]

BLAST of Sgr025993 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-04
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MEGKMLSKQVENLKLTEE---------EGGVVEITDDELDESEKSIK-NLVCKILTSKKV 60
          M  ++LS+ VE LKLT+E         EG + ++ +DE+++ +K  + +LVCK+LT K +
Sbjct: 1  MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 61 NVEIFRTMIPKIWNVEEDIQIEKVGR 77
            E+F+ M+P+IW    +++IE VG+
Sbjct: 61 PGEVFKNMMPRIW-ANVNVKIESVGK 85

[Close]

BLAST of Sgr025993 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-04
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MEGKMLSKQVENLKLTEE---------EGGVVEITDDELDESEKSIK-NLVCKILTSKKV 60
          M  ++LS+ VE LKLT+E         EG + ++ +DE+++ +K  + +LVCK+LT K +
Sbjct: 1  MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 61 NVEIFRTMIPKIWNVEEDIQIEKVGR 77
            E+F+ M+P+IW    +++IE VG+
Sbjct: 61 PGEVFKNMMPRIW-ANVNVKIESVGK 85

[Close]

BLAST of Sgr025993 vs. ExPASy TrEMBL
Match: A0A6J1CQJ5 (uncharacterized protein LOC111013413 OS=Momordica charantia OX=3673 GN=LOC111013413 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 34/78 (43.59%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MEGKMLSKQVENLKLT-EEEGGVVEITDDELDESEKSIK-NLVCKILTSKKVNVEIFRTM 60
          M  ++LS+QVE LKLT EE+G + ++ +DE+++ +K  + +LVCK+LT K +  E+F+ M
Sbjct: 1  MADELLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNM 60

Query: 61 IPKIWNVEEDIQIEKVGR 77
          +P+IW V  +++IE VG+
Sbjct: 61 MPRIW-VNVNVKIESVGK 77

[Close]

BLAST of Sgr025993 vs. ExPASy TrEMBL
Match: A0A5C7I6M9 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_011841 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 30/76 (39.47%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  MEGKMLSKQVENLKLTEEEGGVVEITDD-ELDESEKSIKNLVCKILTSKKVNVEIFRTMI 60
          M    L++  ENL LT+E+G ++EI ++ EL+  E    NLV ++L+ KKVN E+F+++I
Sbjct: 1  MSAADLAELCENLSLTDEDGAILEIIEEAELEGEEDVDHNLVGRVLSGKKVNKEVFKSLI 60

Query: 61 PKIWNVEEDIQIEKVG 76
           ++WN   +++IE +G
Sbjct: 61 DQLWNPFGNVEIELIG 76

[Close]

BLAST of Sgr025993 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MEGKMLSKQVENLKLTEE---------EGGVVEITDDELDESEKSIK-NLVCKILTSKKV 60
          M  ++LS+ VE LKLT+E         EG + ++ +DE+++ +K  + +LVCK+LT K +
Sbjct: 1  MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 61 NVEIFRTMIPKIWNVEEDIQIEKVGR 77
            E+F+ M+P+IW    +++IE VG+
Sbjct: 61 PGEVFKNMMPRIW-ANVNVKIESVGK 85

[Close]

BLAST of Sgr025993 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MEGKMLSKQVENLKLTEE---------EGGVVEITDDELDESEKSIK-NLVCKILTSKKV 60
          M  ++LS+ VE LKLT+E         EG + ++ +DE+++ +K  + +LVCK+LT K +
Sbjct: 1  MADELLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNI 60

Query: 61 NVEIFRTMIPKIWNVEEDIQIEKVGR 77
            E+F+ M+P+IW    +++IE VG+
Sbjct: 61 PGEVFKNMMPRIW-ANVNVKIESVGK 85

[Close]

BLAST of Sgr025993 vs. ExPASy TrEMBL
Match: A0A5C7HVT5 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_012277 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.4e-04
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 6  LSKQVENLKLTEEEGGVVEITDD-ELDESEKSIKNLVCKILTSKKVNVEIFRTMIPKIWN 65
          +S+  ENL +T+E+G V+E ++D +LD  E   K LV K+L+ KKVN + F+ +I +IWN
Sbjct: 6  ISRLYENLSITDEDGAVLETSEDVQLDGVEDVEKCLVGKVLSGKKVNRKAFKGLIEQIWN 65

Query: 66 VEEDIQIEKVG 76
              +++E VG
Sbjct: 66 PFGTVEVEMVG 76

The following BLAST results are available for this feature:

BLAST of Sgr025993 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143536.1	2.6e-06	43.59	uncharacterized protein LOC111013413 [Momordica charantia]	[more]
KAG6591872.1	9.8e-06	47.89	hypothetical protein SDJN03_14218, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TXG64847.1	4.9e-05	39.47	hypothetical protein EZV62_011841 [Acer yangbiense]	[more]
XP_022154990.1	4.1e-04	37.21	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	4.1e-04	37.21	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]

BLAST of Sgr025993 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr025993 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQJ5	1.3e-06	43.59	uncharacterized protein LOC111013413 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5C7I6M9	2.4e-05	39.47	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01184...	[more]
A0A6J1DL64	2.0e-04	37.21	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	2.0e-04	37.21	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A5C7HVT5	3.4e-04	42.25	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01227...	[more]

BLAST of Sgr025993 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr025993.1	Sgr025993.1	mRNA