Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCCCAAATTCAAACTCTGCCCAAAAACCTTAGGAATCCCCCCTTCTCCTCTTTCTGCAATCCCCAAACTTGTGAAGGGGGTGTTTTCATCTTTTCTTTCAGCCATCATCGACATCGGAGCGGATGTCCTCACTCTGTCAA GTGCATGTTGAGATGAAAACAATGATCTAACCAACTGCACTAATTCTAAGCTCTCACTCACGGATCTCACCGAACCCAATTCAACTACTCCAACATCAGTCGGTACCAAGACGACCGTCCGAATTCCCGCAGATTTAGCCAGATACGATCTCACGCAATATTCAGACTGCGAATTGAGCACGTCCAAAAGCCAGATATGTTTCCCAGAAGCCAAACACTTTCCAGGGCCCCCCTCTCCACGAGGGAAGGAGAAATACATGGAAGCAAGAAAAAACATTTCTGTATCAGTAACTCGGTCCAATCCAAGAGCATAA mRNA sequence
ATGTTCCCCAAATTCAAACTCTGCCCAAAAACCTTAGGAATCCCCCCTTCTCCTCTTTCTGCAATCCCCAAACTTGTGAAGGGGGTGTTTTCATCTTTTCTTTCAGCCATCATCGACATCGGAGCGGATGTCCTCACTCTGTCAATCGGTACCAAGACGACCGTCCGAATTCCCGCAGATTTAGCCAGATACGATCTCACGCAATATTCAGACTGCGAATTGAGCACGTCCAAAAGCCAGATATGTTTCCCAGAAGCCAAACACTTTCCAGGGCCCCCCTCTCCACGAGGGAAGGAGAAATACATGGAAGCAAGAAAAAACATTTCTGTATCAGTAACTCGGTCCAATCCAAGAGCATAA Coding sequence (CDS)
ATGTTCCCCAAATTCAAACTCTGCCCAAAAACCTTAGGAATCCCCCCTTCTCCTCTTTCTGCAATCCCCAAACTTGTGAAGGGGGTGTTTTCATCTTTTCTTTCAGCCATCATCGACATCGGAGCGGATGTCCTCACTCTGTCAATCGGTACCAAGACGACCGTCCGAATTCCCGCAGATTTAGCCAGATACGATCTCACGCAATATTCAGACTGCGAATTGAGCACGTCCAAAAGCCAGATATGTTTCCCAGAAGCCAAACACTTTCCAGGGCCCCCCTCTCCACGAGGGAAGGAGAAATACATGGAAGCAAGAAAAAACATTTCTGTATCAGTAACTCGGTCCAATCCAAGAGCATAA Protein sequence
MFPKFKLCPKTLGIPPSPLSAIPKLVKGVFSSFLSAIIDIGADVLTLSIGTKTTVRIPADLARYDLTQYSDCELSTSKSQICFPEAKHFPGPPSPRGKEKYMEARKNISVSVTRSNPRA
Homology
BLAST of Sgr025427 vs. ExPASy TrEMBL
Match:
A0A0A9GXG6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 0
Query: 50 GTKTTVRIPADLARYDLTQYSDCELS---TSKSQICFPEAKHFPGPPSPRGKEKYMEARK 109 G KTTVR PAD AR T +S S ++ +Q PEA PGPP+P G EKYM+ARK Sbjct: 99 GRKTTVRRPADRARDARTYHSGAAASGWGSTVAQAWRPEASARPGPPAPSGNEKYMDARK 158 Query: 110 NISVSVTRSNPRA 120 IS VTRS+ A Sbjct: 159 YISAPVTRSSRSA 171
BLAST of Sgr025427 vs. ExPASy TrEMBL
Match:
A0A0A9EJ02 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 4.3e-06
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 0
Query: 50 GTKTTVRIPADLARYDLTQYSDCELS---TSKSQICFPEAKHFPGPPSPRGKEKYMEARK 109 G KTTVR PAD AR T ++ S ++ +Q PEA PGPP P G EKYM+ARK Sbjct: 95 GRKTTVRSPADRARDARTYHTGAAASGWESTVAQAWRPEASARPGPPPPSGNEKYMDARK 154 Query: 110 NISVSVTRSNPRA 120 IS VTRS A Sbjct: 155 YISAPVTRSRRSA 167
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A9GXG6 1.1e-06 52.05 Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 [more]
A0A0A9EJ02 4.3e-06 50.68 Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
A T G T T C C C C A A A T T C A A A C T C T G C C C A A A A A C C T T A G G A A T C C C C C C T T C T C C T C T T T C T G C A A T C C C C A A A C T T G T G A A G G G G G T G T T T T C A T C T T T T C T T T C A G C C A T C A T C G A C A T C G G A G C G G A T G T C C T C A C T C T G T C A A T C G G T A C C A A G A C G A C C G T C C G A A T T C C C G C A G A T T T A G C C A G A T A C G A T C T C A C G C A A T A T T C A G A C T G C G A A T T G A G C A C G T C C A A A A G C C A G A T A T G T T T C C C A G A A G C C A A A C A C T T T C C A G G G C C C C C C T C T C C A C G A G G G A A G G A G A A A T A C A T G G A A G C A A G A A A A A A C A T T T C T G T A T C A G T A A C T C G G T C C A A T C C A A G A G C A T A A 50 100 150 200 250 300 350 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 85..119
Relationships
The following mRNA feature(s) are a part of this gene: