Sgr020470 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr020470
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	40S ribosomal protein S23-1
Location	tig00153533: 528852 .. 530093 (-)
RNA-Seq Expression	Sgr020470
Synteny	Sgr020470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTAGACGTTTCTTAGGTTTTTCAGATGGTGAGGTAATGAGGTCAGATGCTAAACCCTGTTCACAGTTGATGAGACAGACTGCTGGGTTATGTACAGTTGGAGGAGGACTTGCATTCTGGATTCTCTGTAGATTACATTATGGTCAGTCAGTACTTTTCTCAGCTCGTCTGAATTTAAATGCATAATCAATCAAGTTGCATGTTTTTCTATTTTCCTGACCAACTTTCAGTGAACACAAATGGTACTTTAAGTCTTTAATAAAAAATTCTTTTCTTATAGATTCTTCAAATCTATTTAGAAACTCCATTTGAATAGAAGCCCCAGTGTTCTAAATCTGTCTTTAACTATATAGAGTTTGATTAGGTAAAAGGATTAAGCGAACTAATGTGCTAGAGGTTAGAAAGATGGATCACATATGATATTTCTCTCCTGCTTTTGGGTATATTAGTTACCTTTCTTCTATGGATTTTTGTTGTTGACACACTTTTTTTTAATAGGAAACAAACATTTCGTTGATAGGATGAAATAAAAAAAATAAAAAGGGGTGGGGGAGCCAAGCTAAAAGAAGTTACATAAAAGCCGTTCAGTTAGCCAAAAGATCAACCAAACTATAATTTGAAAAAAAAAGTAAAATTTACACCAATGTAATGCATGAAGAACTATATCTTTGAATCTGTCCAAAGAGAGGGAAGTGTTGTTGAAAGTGCGATTGTTTCTTTCGATCCATAGCATCCAAAAAAAAAAAAACTCTGTTATTCTGCTACCATGATATTTTCTGTCCTTTAAAAGGGTGGCCTGTGAATATAGTATGGAGGAGGGCATTCATTTTGTGGTTGACACTTGGATGTAGTGCGAGCAAATTGAAACACATTTTTCTTGTTTATTGATGGAAAACAAGAGCAACTTTCATTAGTTCAAAAATAGATATTTAAGGTTATATTCAAATCCGATCCAAAGAATGAGTTGTGGTGGTGCCTTTACAGTCTTGTCCATCTTTTGAAGTGGATTGCCTGTGGTCCTAGGGGATTAAGATTTTAATATTGTTCTTAAGCCTGTAAGATTCTGGATTCTGTTGTGTGATAGGTCCAAGAATTACAGTACCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGTATCAATGAGTGCAACCTCGGCTTTGCTTGTTCGCTTATTTAGTCCAGAGTGTGAACCCCAGAATATAGCTGCTTATGACAAAAGGAAAGTTGTAAGGTAA

mRNA sequence

ATGGCACTTAGACGTTTCTTAGGTTTTTCAGATGGTGAGGTAATGAGGTCAGATGCTAAACCCTGTTCACAGTTGATGAGACAGACTGCTGGGTTATGTACAGTTGGAGGAGGACTTGCATTCTGGATTCTCTGTAGATTACATTATGGTCCAAGAATTACAGTACCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGTATCAATGAGTGCAACCTCGGCTTTGCTTGTTCGCTTATTTAGTCCAGAGTGTGAACCCCAGAATATAGCTGCTTATGACAAAAGGAAAGTTGTAAGGTAA

Coding sequence (CDS)

ATGGCACTTAGACGTTTCTTAGGTTTTTCAGATGGTGAGGTAATGAGGTCAGATGCTAAACCCTGTTCACAGTTGATGAGACAGACTGCTGGGTTATGTACAGTTGGAGGAGGACTTGCATTCTGGATTCTCTGTAGATTACATTATGGTCCAAGAATTACAGTACCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCAGTATCAATGAGTGCAACCTCGGCTTTGCTTGTTCGCTTATTTAGTCCAGAGTGTGAACCCCAGAATATAGCTGCTTATGACAAAAGGAAAGTTGTAAGGTAA

Protein sequence

MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR

Homology

[Close]

BLAST of Sgr020470 vs. NCBI nr
Match: XP_038889141.1 (uncharacterized protein LOC120079031 [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-48
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRFLGFSDGEVMRSDAKPCSQLM+QTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFLGFSDGEVMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDKRKVV+
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKRKVVK 99

[Close]

BLAST of Sgr020470 vs. NCBI nr
Match: XP_022156333.1 (uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156334.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156335.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156336.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156337.1 uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156338.1 uncharacterized protein LOC111023254 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR LGFSDGEVMRSDA PC QLM+QTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR
Sbjct: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 99

[Close]

BLAST of Sgr020470 vs. NCBI nr
Match: XP_022969628.1 (uncharacterized protein LOC111468599 [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-46
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRF GFSDGE+MRSDAKPCSQLM+QTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK K  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGKAAR 99

[Close]

BLAST of Sgr020470 vs. NCBI nr
Match: XP_023538321.1 (uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 5.6e-46
Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRF GFSDG++MRSDAKPCSQLM+QTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGDLMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK K  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGKAAR 99

[Close]

BLAST of Sgr020470 vs. NCBI nr
Match: XP_022937466.1 (uncharacterized protein LOC111443868 [Cucurbita moschata] >KAG7020841.1 hypothetical protein SDJN02_17529, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 7.3e-46
Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRF GFSDGE+MRSDAKPCSQLM+QTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK +  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 99

[Close]

BLAST of Sgr020470 vs. ExPASy TrEMBL
Match: A0A6J1DQC3 (uncharacterized protein LOC111023254 OS=Momordica charantia OX=3673 GN=LOC111023254 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRR LGFSDGEVMRSDA PC QLM+QTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRILGFSDGEVMRSDATPCPQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR
Sbjct: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 99

[Close]

BLAST of Sgr020470 vs. ExPASy TrEMBL
Match: A0A6J1I1J3 (uncharacterized protein LOC111468599 OS=Cucurbita maxima OX=3661 GN=LOC111468599 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 92/99 (92.93%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRF GFSDGE+MRSDAKPCSQLM+QTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK K  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGKAAR 99

[Close]

BLAST of Sgr020470 vs. ExPASy TrEMBL
Match: A0A6J1FAF1 (uncharacterized protein LOC111443868 OS=Cucurbita moschata OX=3662 GN=LOC111443868 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46
Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
           MALRRF GFSDGE+MRSDAKPCSQLM+QTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR
Sbjct: 1   MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60

Query: 61  WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKVVR 100
           WAACGA SMSATSALLVRLFSPECEPQNIAAYDK +  R
Sbjct: 61  WAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR 99

[Close]

BLAST of Sgr020470 vs. ExPASy TrEMBL
Match: A0A1S3BWM4 (uncharacterized protein LOC103493937 OS=Cucumis melo OX=3656 GN=LOC103493937 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR LGFSDGE+MRSDAKPCSQLM+QTAGLC+V G L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKV 98
          WAACGA SMSATSALLVRLFSPECEPQNIAAYD+ K+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDRGKL 97

[Close]

BLAST of Sgr020470 vs. ExPASy TrEMBL
Match: A0A5D3BBN9 (40S ribosomal protein S23-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00620 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALRR LGFSDGE+MRSDAKPCSQLM+QTAGLC+V G L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRRLLGFSDGEIMRSDAKPCSQLMKQTAGLCSVEGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRKV 98
          WAACGA SMSATSALLVRLFSPECEPQNIAAYD+ K+
Sbjct: 61 WAACGAASMSATSALLVRLFSPECEPQNIAAYDRGKL 97

[Close]

BLAST of Sgr020470 vs. TAIR 10
Match: AT1G57540.1 (unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-40
Identity = 73/96 (76.04%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+ LG+S+G++MRSDAKPCS+LM+QTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WA CGA+S+S ++A+LVRLFSPECEPQNIAAYD  K
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYDNIK 96

[Close]

BLAST of Sgr020470 vs. TAIR 10
Match: AT1G57540.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-40
Identity = 73/96 (76.04%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+ LG+S+G++MRSDAKPCS+LM+QTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WA CGA+S+S ++A+LVRLFSPECEPQNIAAYD  K
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYDNIK 96

[Close]

BLAST of Sgr020470 vs. TAIR 10
Match: AT1G57540.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 161.8 bits (408), Expect = 2.9e-40
Identity = 73/96 (76.04%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MALRRFLGFSDGEVMRSDAKPCSQLMRQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLR 60
          MALR+ LG+S+G++MRSDAKPCS+LM+QTA + TVGG L FW+LCRLHYGPRITVPRSLR
Sbjct: 1  MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLR 60

Query: 61 WAACGAVSMSATSALLVRLFSPECEPQNIAAYDKRK 97
          WA CGA+S+S ++A+LVRLFSPECEPQNIAAYD  K
Sbjct: 61 WAGCGALSVSTSTAMLVRLFSPECEPQNIAAYDNIK 96

The following BLAST results are available for this feature:

BLAST of Sgr020470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889141.1	1.6e-48	96.97	uncharacterized protein LOC120079031 [Benincasa hispida]	[more]
XP_022156333.1	2.3e-47	95.96	uncharacterized protein LOC111023254 [Momordica charantia] >XP_022156334.1 uncha...	[more]
XP_022969628.1	2.5e-46	92.93	uncharacterized protein LOC111468599 [Cucurbita maxima]	[more]
XP_023538321.1	5.6e-46	91.92	uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo]	[more]
XP_022937466.1	7.3e-46	91.92	uncharacterized protein LOC111443868 [Cucurbita moschata] >KAG7020841.1 hypothet...	[more]

BLAST of Sgr020470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr020470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQC3	1.1e-47	95.96	uncharacterized protein LOC111023254 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1I1J3	1.2e-46	92.93	uncharacterized protein LOC111468599 OS=Cucurbita maxima OX=3661 GN=LOC111468599...	[more]
A0A6J1FAF1	3.6e-46	91.92	uncharacterized protein LOC111443868 OS=Cucurbita moschata OX=3662 GN=LOC1114438...	[more]
A0A1S3BWM4	3.7e-43	87.63	uncharacterized protein LOC103493937 OS=Cucumis melo OX=3656 GN=LOC103493937 PE=...	[more]
A0A5D3BBN9	3.7e-43	87.63	40S ribosomal protein S23-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Sgr020470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G57540.1	2.9e-40	76.04	unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bac...	[more]
AT1G57540.2	2.9e-40	76.04	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT1G57540.3	2.9e-40	76.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36331	40S RIBOSOMAL PROTEIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr020470.1	Sgr020470.1	mRNA