Sgr019925 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr019925
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	tig00153425: 822218 .. 822378 (-)
RNA-Seq Expression	Sgr019925
Synteny	Sgr019925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTGCAAAATTGATAGGGTGCAAATGGGTTTTTCGATTAAAGCACAAGCAGAATGGTGATATTGAAAGGCACAAGGAAAGATTAGTTGCTCCGGGTTTCCAACAAACGTATGGTAGTGATTATTTTGAAACGTTAAGCCCTGTTGTAAAGCCTATTACG

mRNA sequence

CAGGTGCAAAATTGATAGGGTGCAAATGGGTTTTTCGATTAAAGCACAAGCAGAATGGTGATATTGAAAGGCACAAGGAAAGATTAGTTGCTCCGGGTTTCCAACAAACGTATGGTAGTGATTATTTTGAAACGTTAAGCCCTGTTGTAAAGCCTATTACG

Coding sequence (CDS)

CAGGTGCAAAATTGATAGGGTGCAAATGGGTTTTTCGATTAAAGCACAAGCAGAATGGTGATATTGAAAGGCACAAGGAAAGATTAGTTGCTCCGGGTTTCCAACAAACGTATGGTAGTGATTATTTTGAAACGTTAAGCCCTGTTGTAAAGCCTATTACG

Protein sequence

GAKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT

Homology

[Close]

BLAST of Sgr019925 vs. NCBI nr
Match: CAN71553.1 (hypothetical protein VITISV_034738 [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+IGCKWVF+LKHK NG I+R+K RLVA GF QTYG D+FET SPVVKP T
Sbjct: 837 AKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCT 888

[Close]

BLAST of Sgr019925 vs. NCBI nr
Match: RVW78327.1 (7-deoxyloganetin glucosyltransferase [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+IGCKWVF+LKHK NG I+R+K RLVA GF QTYG D+FET SPVVKP T
Sbjct: 879 AKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCT 930

[Close]

BLAST of Sgr019925 vs. NCBI nr
Match: RVW13483.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 6.1e-15
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+IGCKWVF+LKHK NG I+R+K RLVA GF QTYG D+FET SPVVKP T
Sbjct: 618 AKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCT 669

[Close]

BLAST of Sgr019925 vs. NCBI nr
Match: RVX17172.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 4.0e-14
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+IGCKWVF+LKHK NG I+R+K RLVA GF QTY  D+FET SPVVKP T
Sbjct: 824 AKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYDIDFFETFSPVVKPCT 875

[Close]

BLAST of Sgr019925 vs. NCBI nr
Match: CAN75478.1 (hypothetical protein VITISV_020209 [Vitis vinifera])

HSP 1 Score: 87.0 bits (214), Expect = 5.2e-14
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+I CKWVF+LKHK NG I+R+K RLVA GF QTYG D+FET SPVVKP T
Sbjct: 583 AKIIRCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCT 634

[Close]

BLAST of Sgr019925 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.8e-09
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 4    LIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVK 51
            ++GC+W+F  K+  +G + R+K RLVA G+ Q  G DY ET SPV+K
Sbjct: 997  IVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIK 1043

[Close]

BLAST of Sgr019925 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-08
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 4    LIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVK 51
            ++GC+W+F  K   +G + R+K RLVA G+ Q  G DY ET SPV+K
Sbjct: 980  IVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIK 1026

[Close]

BLAST of Sgr019925 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-07
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 4   LIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           ++GCKWVF+ K   +G ++R K RLVA GF Q  G  + ET SPVV+  T
Sbjct: 68  ILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTAT 117

[Close]

BLAST of Sgr019925 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.4e-06
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   GAKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVK 51
           G + + CKWVF+LK   +  + R+K RLV  GF+Q  G D+ E  SPVVK
Sbjct: 851 GKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVK 900

[Close]

BLAST of Sgr019925 vs. ExPASy TrEMBL
Match: A0A438BR97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_806 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-15
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+IGCKWVF+LKHK NG I+R+K RLVA GF QTYG D+FET SPVVKP T
Sbjct: 618 AKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCT 669

[Close]

BLAST of Sgr019925 vs. ExPASy TrEMBL
Match: A5AQ04 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_034738 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-15
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+IGCKWVF+LKHK NG I+R+K RLVA GF QTYG D+FET SPVVKP T
Sbjct: 837 AKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCT 888

[Close]

BLAST of Sgr019925 vs. ExPASy TrEMBL
Match: A0A438H229 (7-deoxyloganetin glucosyltransferase OS=Vitis vinifera OX=29760 GN=UGT85A24_11 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-15
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+IGCKWVF+LKHK NG I+R+K RLVA GF QTYG D+FET SPVVKP T
Sbjct: 879 AKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCT 930

[Close]

BLAST of Sgr019925 vs. ExPASy TrEMBL
Match: A0A438K7J8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_880 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+IGCKWVF+LKHK NG I+R+K RLVA GF QTY  D+FET SPVVKP T
Sbjct: 824 AKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYDIDFFETFSPVVKPCT 875

[Close]

BLAST of Sgr019925 vs. ExPASy TrEMBL
Match: A5CAE5 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_020209 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-14
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 2   AKLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           AK+I CKWVF+LKHK NG I+R+K RLVA GF QTYG D+FET SPVVKP T
Sbjct: 583 AKIIRCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCT 634

[Close]

BLAST of Sgr019925 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 63.9 bits (154), Expect = 4.4e-11
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 3   KLIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVK 51
           K IGCKWV+++K+  +G IER+K RLVA G+ Q  G D+ ET SPV K
Sbjct: 125 KPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCK 172

[Close]

BLAST of Sgr019925 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 56.2 bits (134), Expect = 9.1e-09
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 4   LIGCKWVFRLKHKQNGDIERHKERLVAPGFQQTYGSDYFETLSPVVKPIT 54
           ++GCKWVF+ K   +G ++R K RLVA GF Q  G  + ET SPVV+  T
Sbjct: 68  ILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTAT 117

The following BLAST results are available for this feature:

BLAST of Sgr019925 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN71553.1	6.1e-15	75.00	hypothetical protein VITISV_034738 [Vitis vinifera]	[more]
RVW78327.1	6.1e-15	75.00	7-deoxyloganetin glucosyltransferase [Vitis vinifera]	[more]
RVW13483.1	6.1e-15	75.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX17172.1	4.0e-14	73.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN75478.1	5.2e-14	73.08	hypothetical protein VITISV_020209 [Vitis vinifera]	[more]

BLAST of Sgr019925 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	6.8e-09	48.94	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.5e-08	48.94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	1.3e-07	50.00	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	1.4e-06	48.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Sgr019925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438BR97	3.0e-15	75.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5AQ04	3.0e-15	75.00	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438H229	3.0e-15	75.00	7-deoxyloganetin glucosyltransferase OS=Vitis vinifera OX=29760 GN=UGT85A24_11 P...	[more]
A0A438K7J8	1.9e-14	73.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5CAE5	2.5e-14	73.08	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]

BLAST of Sgr019925 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.4e-11	56.25	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	9.1e-09	50.00	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..50 e-value: 2.6E-10 score: 40.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr019925.1	Sgr019925.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015276	ligand-gated ion channel activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity