Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTTGAAGCAGCAACTCAACTAAATCCGCCTTGCTTCACCTATTATGCGACATTGATGAGCAGGCTGATAACCACAACCAAAGATGTCAAGATACTGAAGCAAGCAGGGATCATCGAGGGCCATTCAGGGAGTGAAGAAGAGGTGGTGATACTGTTTGGTGGGCTAAGAAATCTCTTGGAACTTCACCAGCAGAGTTATAACTCTGGTAGGATCATAAAGATGGCTGAGATTCAAATCGTTAAGGACATCAATTGCTATTATGAAAGTTGCTGGAAGGTGAAAGCCAAAAGATTCATTAAGAGATATGTGAATCCAGTATTGAAGTTGATCTTTCTTATTGTTGTGATTTTGCTTATTATTGTGGTAGTTGTACGCTTGTTTTGTGGTTGGTTTGGTGGCTCTAGAATTTTGCATGTGGTTTCTTAG
mRNA sequence
ATGGCGTTTGAAGCAGCAACTCAACTAAATCCGCCTTGCTTCACCTATTATGCGACATTGATGAGCAGGCTGATAACCACAACCAAAGATGTCAAGATACTGAAGCAAGCAGGGATCATCGAGGGCCATTCAGGGAGTGAAGAAGAGGTGGTGATACTGTTTGGTGGGCTAAGAAATCTCTTGGAACTTCACCAGCAGAGTTATAACTCTGGTAGGATCATAAAGATGGCTGAGATTCAAATCGTTAAGGACATCAATTGCTATTATGAAAGTTGCTGGAAGGTGAAAGCCAAAAGATTCATTAAGAGATATGTGAATCCAGTATTGAAGTTGATCTTTCTTATTGTTGTGATTTTGCTTATTATTGTGGTAGTTGTACGCTTGTTTTGTGGTTGGTTTGGTGGCTCTAGAATTTTGCATGTGGTTTCTTAG
Coding sequence (CDS)
ATGGCGTTTGAAGCAGCAACTCAACTAAATCCGCCTTGCTTCACCTATTATGCGACATTGATGAGCAGGCTGATAACCACAACCAAAGATGTCAAGATACTGAAGCAAGCAGGGATCATCGAGGGCCATTCAGGGAGTGAAGAAGAGGTGGTGATACTGTTTGGTGGGCTAAGAAATCTCTTGGAACTTCACCAGCAGAGTTATAACTCTGGTAGGATCATAAAGATGGCTGAGATTCAAATCGTTAAGGACATCAATTGCTATTATGAAAGTTGCTGGAAGGTGAAAGCCAAAAGATTCATTAAGAGATATGTGAATCCAGTATTGAAGTTGATCTTTCTTATTGTTGTGATTTTGCTTATTATTGTGGTAGTTGTACGCTTGTTTTGTGGTTGGTTTGGTGGCTCTAGAATTTTGCATGTGGTTTCTTAG
Protein sequence
MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNLLELHQQSYNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVILLIIVVVVRLFCGWFGGSRILHVVS
Homology
BLAST of Sgr016854 vs. NCBI nr
Match:
KAE8649012.1 (hypothetical protein Csa_008980 [Cucumis sativus])
HSP 1 Score: 216.9 bits (551), Expect = 1.2e-52
Identity = 113/144 (78.47%), Postives = 125/144 (86.81%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
MAFEAAT+LNPPCF+YY LMS LITT DVKILKQ IIE HS SEEEVV +FGGLRN+
Sbjct: 394 MAFEAATKLNPPCFSYYVALMSWLITTANDVKILKQERIIESHSCSEEEVVKVFGGLRNV 453
Query: 61 LELHQQS-YNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVIL 120
LELHQ+S Y S I+ MAEIQI KDINCYYESCWKVKA+R +KRYVNPVLKLIF++VVIL
Sbjct: 454 LELHQKSYYKSCTIMNMAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLKLIFILVVIL 513
Query: 121 LIIVVVVRLFCGWFGGSRILHVVS 144
L++VVVVR FCGWFG SRILHVVS
Sbjct: 514 LVVVVVVRTFCGWFGCSRILHVVS 537
BLAST of Sgr016854 vs. NCBI nr
Match:
XP_011656112.2 (putative UPF0481 protein At3g02645 [Cucumis sativus])
HSP 1 Score: 216.9 bits (551), Expect = 1.2e-52
Identity = 113/144 (78.47%), Postives = 125/144 (86.81%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
MAFEAAT+LNPPCF+YY LMS LITT DVKILKQ IIE HS SEEEVV +FGGLRN+
Sbjct: 403 MAFEAATKLNPPCFSYYVALMSWLITTANDVKILKQERIIESHSCSEEEVVKVFGGLRNV 462
Query: 61 LELHQQS-YNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVIL 120
LELHQ+S Y S I+ MAEIQI KDINCYYESCWKVKA+R +KRYVNPVLKLIF++VVIL
Sbjct: 463 LELHQKSYYKSCTIMNMAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLKLIFILVVIL 522
Query: 121 LIIVVVVRLFCGWFGGSRILHVVS 144
L++VVVVR FCGWFG SRILHVVS
Sbjct: 523 LVVVVVVRTFCGWFGCSRILHVVS 546
BLAST of Sgr016854 vs. NCBI nr
Match:
XP_008459652.1 (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])
HSP 1 Score: 212.2 bits (539), Expect = 2.9e-51
Identity = 112/144 (77.78%), Postives = 123/144 (85.42%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
MAFEAAT+LNPPCF+YY LMS LITT DVKILKQ IIE S SEEE+V +F GLRN+
Sbjct: 394 MAFEAATKLNPPCFSYYVALMSWLITTANDVKILKQERIIESQSCSEEEIVKVFSGLRNV 453
Query: 61 LELHQQS-YNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVIL 120
LELHQQS Y S I+ MAEIQI KDINCYYESCWKVKA+R +KRYVNPVLKLIF++VVIL
Sbjct: 454 LELHQQSNYKSCTIMNMAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLKLIFVMVVIL 513
Query: 121 LIIVVVVRLFCGWFGGSRILHVVS 144
LI+VVVVR FCGWFG SRILHVVS
Sbjct: 514 LIVVVVVRTFCGWFGCSRILHVVS 537
BLAST of Sgr016854 vs. NCBI nr
Match:
XP_038889519.1 (putative UPF0481 protein At3g02645 [Benincasa hispida])
HSP 1 Score: 211.8 bits (538), Expect = 3.8e-51
Identity = 111/143 (77.62%), Postives = 121/143 (84.62%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
+AFEAAT LNPP F YY LMS LITT DVKILKQ IIE HSGSEEEVV LF GLRN+
Sbjct: 392 VAFEAATNLNPPWFGYYVALMSGLITTANDVKILKQERIIESHSGSEEEVVKLFSGLRNV 451
Query: 61 LELHQQSYNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVILL 120
LELHQQ Y S RI+ MAE+QIVKDIN YYESCWKVKAKR +KRYVNPV+K++F+IVVILL
Sbjct: 452 LELHQQRYKSCRIMNMAELQIVKDINYYYESCWKVKAKRLVKRYVNPVVKILFVIVVILL 511
Query: 121 IIVVVVRLFCGWFGGSRILHVVS 144
I+VVVV FCGWFG SRILHVVS
Sbjct: 512 IVVVVVGTFCGWFGCSRILHVVS 534
BLAST of Sgr016854 vs. NCBI nr
Match:
KAG7025194.1 (putative UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 202.6 bits (514), Expect = 2.3e-48
Identity = 106/141 (75.18%), Postives = 122/141 (86.52%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
+AFE AT+LNPPCF+ Y LMS LITTTKDVKILK+A II+ HSGSEE+VV LF GLRN+
Sbjct: 687 VAFEVATKLNPPCFSNYVALMSGLITTTKDVKILKEASIIKRHSGSEEKVVELFDGLRNV 746
Query: 61 LELHQQSYNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVILL 120
LELHQ S NS RI MAEIQIVKDIN YYESCW VKAKRFIK+Y+NP++K+I L+VVILL
Sbjct: 747 LELHQHSDNSCRIKNMAEIQIVKDINSYYESCWTVKAKRFIKKYINPMMKVIVLVVVILL 806
Query: 121 IIVVVVRLFCGWFGGSRILHV 142
I VVV+R+FCGWFG SRIL+V
Sbjct: 807 IGVVVLRMFCGWFGCSRILNV 827
BLAST of Sgr016854 vs. ExPASy Swiss-Prot
Match:
P0C897 (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 PE=3 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 4.5e-07
Identity = 33/129 (25.58%), Postives = 70/129 (54.26%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
+A+EA P FT Y L++ +I + +DV++L++ G++ S++E ++ G+
Sbjct: 397 VAYEATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKS 456
Query: 61 LELHQQSYNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVILL 120
+ L + + + ++D+N YY WKVK R ++ YV +++ + +LL
Sbjct: 457 VRLTKVGFLD---------KTIEDVNRYYTGRWKVKIGRLVEVYVYGSWQILAFLAAVLL 516
Query: 121 IIVVVVRLF 130
+++V ++LF
Sbjct: 517 LMLVSLQLF 516
BLAST of Sgr016854 vs. ExPASy TrEMBL
Match:
A0A0A0KSY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650621 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 5.7e-53
Identity = 113/144 (78.47%), Postives = 125/144 (86.81%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
MAFEAAT+LNPPCF+YY LMS LITT DVKILKQ IIE HS SEEEVV +FGGLRN+
Sbjct: 319 MAFEAATKLNPPCFSYYVALMSWLITTANDVKILKQERIIESHSCSEEEVVKVFGGLRNV 378
Query: 61 LELHQQS-YNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVIL 120
LELHQ+S Y S I+ MAEIQI KDINCYYESCWKVKA+R +KRYVNPVLKLIF++VVIL
Sbjct: 379 LELHQKSYYKSCTIMNMAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLKLIFILVVIL 438
Query: 121 LIIVVVVRLFCGWFGGSRILHVVS 144
L++VVVVR FCGWFG SRILHVVS
Sbjct: 439 LVVVVVVRTFCGWFGCSRILHVVS 462
BLAST of Sgr016854 vs. ExPASy TrEMBL
Match:
A0A1S3CB64 (putative UPF0481 protein At3g02645 OS=Cucumis melo OX=3656 GN=LOC103498708 PE=4 SV=1)
HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 112/144 (77.78%), Postives = 123/144 (85.42%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
MAFEAAT+LNPPCF+YY LMS LITT DVKILKQ IIE S SEEE+V +F GLRN+
Sbjct: 394 MAFEAATKLNPPCFSYYVALMSWLITTANDVKILKQERIIESQSCSEEEIVKVFSGLRNV 453
Query: 61 LELHQQS-YNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVIL 120
LELHQQS Y S I+ MAEIQI KDINCYYESCWKVKA+R +KRYVNPVLKLIF++VVIL
Sbjct: 454 LELHQQSNYKSCTIMNMAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLKLIFVMVVIL 513
Query: 121 LIIVVVVRLFCGWFGGSRILHVVS 144
LI+VVVVR FCGWFG SRILHVVS
Sbjct: 514 LIVVVVVRTFCGWFGCSRILHVVS 537
BLAST of Sgr016854 vs. ExPASy TrEMBL
Match:
A0A6J1DUS9 (putative UPF0481 protein At3g02645 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023673 PE=4 SV=1)
HSP 1 Score: 201.8 bits (512), Expect = 1.9e-48
Identity = 109/145 (75.17%), Postives = 123/145 (84.83%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
+AFEAAT+ N F +Y LMS LITT KDVKILKQA IIE H GSEEEVV LF GLRNL
Sbjct: 409 VAFEAATKKNATWFAFYVALMSGLITTAKDVKILKQAEIIESHWGSEEEVVKLFDGLRNL 468
Query: 61 LELH--QQSYNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVI 120
LELH Q SY+SGRI++MAEIQIVKDIN YYESCWKVKAKRFIKR+VNP+LK+IFLI+VI
Sbjct: 469 LELHNQQMSYSSGRIMEMAEIQIVKDINFYYESCWKVKAKRFIKRFVNPILKVIFLILVI 528
Query: 121 LLIIVVVVRLFCGWFGGSRILHVVS 144
LLI+VVV+R CGWF SR+LHV+S
Sbjct: 529 LLIVVVVLRTSCGWFSCSRVLHVLS 553
BLAST of Sgr016854 vs. ExPASy TrEMBL
Match:
A0A6J1IEU4 (putative UPF0481 protein At3g02645 OS=Cucurbita maxima OX=3661 GN=LOC111472585 PE=4 SV=1)
HSP 1 Score: 187.2 bits (474), Expect = 4.8e-44
Identity = 101/143 (70.63%), Postives = 117/143 (81.82%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
+AFE AT+LNPPCF+ Y L+S LITTTKDVKILK+A IIE H+GSEEEVV LF GLR++
Sbjct: 392 VAFEGATKLNPPCFSNYVALISGLITTTKDVKILKKASIIESHAGSEEEVVKLFDGLRSV 451
Query: 61 LELHQQSYNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVILL 120
LEL MAE+Q+VKDIN YYESCWKVKAKRFI++Y+NP+LK+I L+VVILL
Sbjct: 452 LELK----------NMAELQMVKDINSYYESCWKVKAKRFIQKYINPMLKVIVLVVVILL 511
Query: 121 IIVVVVRLFCGWFGGSRILHVVS 144
I VVVVR FCGWFG SRILHVVS
Sbjct: 512 IGVVVVRTFCGWFGCSRILHVVS 524
BLAST of Sgr016854 vs. ExPASy TrEMBL
Match:
A0A6J1EBZ5 (putative UPF0481 protein At3g02645 OS=Cucurbita moschata OX=3662 GN=LOC111432681 PE=4 SV=1)
HSP 1 Score: 183.0 bits (463), Expect = 9.1e-43
Identity = 100/143 (69.93%), Postives = 114/143 (79.72%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
+AFE AT+LNPPCF+ Y LMS LITT KDVKILK+A IIE H G+EEEVV LF GLR++
Sbjct: 392 VAFEGATKLNPPCFSNYVALMSGLITTIKDVKILKEASIIESHIGNEEEVVKLFDGLRSV 451
Query: 61 LELHQQSYNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVILL 120
LEL MAEIQ+VKDIN YYESCWKVKAKRFI++Y+NP+LK+I L+VVILL
Sbjct: 452 LELK----------NMAEIQMVKDINSYYESCWKVKAKRFIQKYINPMLKVIVLVVVILL 511
Query: 121 IIVVVVRLFCGWFGGSRILHVVS 144
I VVVVR FCGWFG RILHVVS
Sbjct: 512 IGVVVVRTFCGWFGCLRILHVVS 524
BLAST of Sgr016854 vs. TAIR 10
Match:
AT3G02645.1 (Plant protein of unknown function (DUF247) )
HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08
Identity = 33/129 (25.58%), Postives = 70/129 (54.26%), Query Frame = 0
Query: 1 MAFEAATQLNPPCFTYYATLMSRLITTTKDVKILKQAGIIEGHSGSEEEVVILFGGLRNL 60
+A+EA P FT Y L++ +I + +DV++L++ G++ S++E ++ G+
Sbjct: 397 VAYEATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKS 456
Query: 61 LELHQQSYNSGRIIKMAEIQIVKDINCYYESCWKVKAKRFIKRYVNPVLKLIFLIVVILL 120
+ L + + + ++D+N YY WKVK R ++ YV +++ + +LL
Sbjct: 457 VRLTKVGFLD---------KTIEDVNRYYTGRWKVKIGRLVEVYVYGSWQILAFLAAVLL 516
Query: 121 IIVVVVRLF 130
+++V ++LF
Sbjct: 517 LMLVSLQLF 516
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8649012.1 | 1.2e-52 | 78.47 | hypothetical protein Csa_008980 [Cucumis sativus] | [more] |
XP_011656112.2 | 1.2e-52 | 78.47 | putative UPF0481 protein At3g02645 [Cucumis sativus] | [more] |
XP_008459652.1 | 2.9e-51 | 77.78 | PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo] | [more] |
XP_038889519.1 | 3.8e-51 | 77.62 | putative UPF0481 protein At3g02645 [Benincasa hispida] | [more] |
KAG7025194.1 | 2.3e-48 | 75.18 | putative UPF0481 protein, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
Match Name | E-value | Identity | Description | |
P0C897 | 4.5e-07 | 25.58 | Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 ... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KSY3 | 5.7e-53 | 78.47 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650621 PE=4 SV=1 | [more] |
A0A1S3CB64 | 1.4e-51 | 77.78 | putative UPF0481 protein At3g02645 OS=Cucumis melo OX=3656 GN=LOC103498708 PE=4 ... | [more] |
A0A6J1DUS9 | 1.9e-48 | 75.17 | putative UPF0481 protein At3g02645 isoform X2 OS=Momordica charantia OX=3673 GN=... | [more] |
A0A6J1IEU4 | 4.8e-44 | 70.63 | putative UPF0481 protein At3g02645 OS=Cucurbita maxima OX=3661 GN=LOC111472585 P... | [more] |
A0A6J1EBZ5 | 9.1e-43 | 69.93 | putative UPF0481 protein At3g02645 OS=Cucurbita moschata OX=3662 GN=LOC111432681... | [more] |
Match Name | E-value | Identity | Description | |
AT3G02645.1 | 3.2e-08 | 25.58 | Plant protein of unknown function (DUF247) | [more] |