Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGTCAATCTGTTGTTGTTCTTGCTTTGCTCTTCGTCGCCGTCGCCGGCGCTGTTGCTCAGGCTCCGACTAGCTCCCCCACGGCGTCTCCGGCGCCCAAGAGCTCGCCTTCTGGTTCTGCCTCGTCTTCTCCTTCTTCTTCGCCGGCTGCTGCTCCGAAAGCTTCATCGGAGTCGTCTCCCTCGCCTTCAGCTTCTGCTCCGGCTTCATCCTCAGAGGCTCCGGCGAGCTCCCCAGGTTCCTCCCCTTCCACTGCTCCTTCACCGGTGACCGAGACACCCGCCGATTCTCCTTCCGAGACCGACGCCGACACCCCGGCCAGCGCCTCGCCTGAGTCCGACGTCTCATCTCCCCCCTCCCCCGACGCCGCTGATAGCCCTGACGCCGCCGCTGATGGCCCTGATGCCGCCGCTGGCCCCGCCGCTGATTCTCCCGCTGATGCACCAGCGACAGCAGCAGATAGCGGCGCTTCTCCACTGAAACTCACCGTCGCCGCCGTCGCTGTTGCCGCCGCCGCCGTCGGCCTCTTTGCTTTCTAA
mRNA sequence
ATGGCTCGTCAATCTGTTGTTGTTCTTGCTTTGCTCTTCGTCGCCGTCGCCGGCGCTGTTGCTCAGGCTCCGACTAGCTCCCCCACGGCGTCTCCGGCGCCCAAGAGCTCGCCTTCTGGTTCTGCCTCGTCTTCTCCTTCTTCTTCGCCGGCTGCTGCTCCGAAAGCTTCATCGGAGTCGTCTCCCTCGCCTTCAGCTTCTGCTCCGGCTTCATCCTCAGAGGCTCCGGCGAGCTCCCCAGGTTCCTCCCCTTCCACTGCTCCTTCACCGGTGACCGAGACACCCGCCGATTCTCCTTCCGAGACCGACGCCGACACCCCGGCCAGCGCCTCGCCTGAGTCCGACGTCTCATCTCCCCCCTCCCCCGACGCCGCTGATAGCCCTGACGCCGCCGCTGATGGCCCTGATGCCGCCGCTGGCCCCGCCGCTGATTCTCCCGCTGATGCACCAGCGACAGCAGCAGATAGCGGCGCTTCTCCACTGAAACTCACCGTCGCCGCCGTCGCTGTTGCCGCCGCCGCCGTCGGCCTCTTTGCTTTCTAA
Coding sequence (CDS)
ATGGCTCGTCAATCTGTTGTTGTTCTTGCTTTGCTCTTCGTCGCCGTCGCCGGCGCTGTTGCTCAGGCTCCGACTAGCTCCCCCACGGCGTCTCCGGCGCCCAAGAGCTCGCCTTCTGGTTCTGCCTCGTCTTCTCCTTCTTCTTCGCCGGCTGCTGCTCCGAAAGCTTCATCGGAGTCGTCTCCCTCGCCTTCAGCTTCTGCTCCGGCTTCATCCTCAGAGGCTCCGGCGAGCTCCCCAGGTTCCTCCCCTTCCACTGCTCCTTCACCGGTGACCGAGACACCCGCCGATTCTCCTTCCGAGACCGACGCCGACACCCCGGCCAGCGCCTCGCCTGAGTCCGACGTCTCATCTCCCCCCTCCCCCGACGCCGCTGATAGCCCTGACGCCGCCGCTGATGGCCCTGATGCCGCCGCTGGCCCCGCCGCTGATTCTCCCGCTGATGCACCAGCGACAGCAGCAGATAGCGGCGCTTCTCCACTGAAACTCACCGTCGCCGCCGTCGCTGTTGCCGCCGCCGCCGTCGGCCTCTTTGCTTTCTAA
Protein sequence
MARQSVVVLALLFVAVAGAVAQAPTSSPTASPAPKSSPSGSASSSPSSSPAAAPKASSESSPSPSASAPASSSEAPASSPGSSPSTAPSPVTETPADSPSETDADTPASASPESDVSSPPSPDAADSPDAAADGPDAAAGPAADSPADAPATAADSGASPLKLTVAAVAVAAAAVGLFAF
Homology
BLAST of Sgr016621 vs. NCBI nr
Match:
KAA0066977.1 (mucin-1 [Cucumis melo var. makuwa] >TYK20871.1 mucin-1 [Cucumis melo var. makuwa])
HSP 1 Score: 123.6 bits (309), Expect = 1.7e-24
Identity = 120/194 (61.86%), Postives = 144/194 (74.23%), Query Frame = 0
Query: 1 MARQSVVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSP-SSSPAAAPKASS 60
MA QSV+V AL+FV AVAG A+APT SP+ SP+PK+SPS S S SP SSSPAA+PKASS
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAASPKASS 60
Query: 61 E-SSPSPSASAPASS------SEAPASSPGSSPSTAPSPVTETP-----ADSPSETDADT 120
E +SPSP+AS+P+SS S++P SSP SSPS +PSP T++P ADSP++ ADT
Sbjct: 61 EATSPSPAASSPSSSSSDAPTSDSPTSSPKSSPSVSPSPATDSPADSPAADSPADNVADT 120
Query: 121 PASASPESDVSSPPSPDAADSPDAAADGPDAAAGPAADSPADAPATAADSGASPLKLTVA 180
P +ASP+SDVSSPPSPDAAD+P AADGP AA GP ADSPAD+PA S + LKLT A
Sbjct: 121 PTAASPDSDVSSPPSPDAADAP-TAADGPMAADGPTADSPADSPAGDDKSSGTDLKLTSA 180
BLAST of Sgr016621 vs. NCBI nr
Match:
XP_008450043.1 (PREDICTED: mucin-1 [Cucumis melo])
HSP 1 Score: 123.6 bits (309), Expect = 1.7e-24
Identity = 120/194 (61.86%), Postives = 144/194 (74.23%), Query Frame = 0
Query: 1 MARQSVVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSP-SSSPAAAPKASS 60
MA QSV+V AL+FV AVAG A+APT SP+ SP+PK+SPS S S SP SSSPAA+PKASS
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAASPKASS 60
Query: 61 E-SSPSPSASAPASS------SEAPASSPGSSPSTAPSPVTETP-----ADSPSETDADT 120
E +SPSP+AS+P+SS S++P SSP SSPS +PSP T++P ADSP++ ADT
Sbjct: 61 ETTSPSPAASSPSSSSSDAPTSDSPTSSPKSSPSVSPSPATDSPADSPAADSPADNVADT 120
Query: 121 PASASPESDVSSPPSPDAADSPDAAADGPDAAAGPAADSPADAPATAADSGASPLKLTVA 180
P +ASP+SDVSSPPSPDAAD+P AADGP AA GP ADSPAD+PA S + LKLT A
Sbjct: 121 PTAASPDSDVSSPPSPDAADAP-TAADGPIAADGPTADSPADSPAGDDKSSGTDLKLTSA 180
BLAST of Sgr016621 vs. NCBI nr
Match:
XP_031737954.1 (classical arabinogalactan protein 11 [Cucumis sativus] >KAE8650788.1 hypothetical protein Csa_017502 [Cucumis sativus])
HSP 1 Score: 119.4 bits (298), Expect = 3.2e-23
Identity = 121/209 (57.89%), Postives = 147/209 (70.33%), Query Frame = 0
Query: 1 MARQSVVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSP-SSSPAAAPKASS 60
MA Q+V+V AL+F+ AVAG A+APT SP+ SP+PK+SPS S S SP SSSPA +PKAS
Sbjct: 1 MASQTVLVFALIFLAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAGSPKASP 60
Query: 61 E-SSPSPSASAPASSSEA-----PASSPGSSPSTAPSPVTETP----------ADSPSET 120
E +SPSP+AS+P+SSS+A P SSP SSPS +PSP T++P ADSP+++
Sbjct: 61 ETTSPSPAASSPSSSSDAPTSNSPTSSPTSSPSVSPSPATDSPSDSPASDSPVADSPADS 120
Query: 121 DADTPASASPESDVSSPPSPDAADSPDA----------AADGPDAAAGP-AADSPADAPA 180
ADTP +ASP+SDVSSPPSPDAAD+P A AADGP AA GP AADSPAD+PA
Sbjct: 121 PADTPTAASPDSDVSSPPSPDAADAPTADGPAAADGPTAADGPTAADGPVAADSPADSPA 180
BLAST of Sgr016621 vs. NCBI nr
Match:
XP_022934589.1 (mucin-1-like [Cucurbita moschata])
HSP 1 Score: 105.1 bits (261), Expect = 6.2e-19
Identity = 126/239 (52.72%), Postives = 144/239 (60.25%), Query Frame = 0
Query: 1 MARQS-VVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSPSSSPAA------ 60
MA QS V+V AL+FV AVAGA A+APT++P+ SPAPKS+PS S +SSPSSSPA+
Sbjct: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP 60
Query: 61 ----------------------------------APKASSESSPSPSASAPASSSEAPA- 120
AP ASSESSPSPSASAP S SEAPA
Sbjct: 61 ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPAS 120
Query: 121 ----SSPGSSPSTAPSPVTETPADSPSETDADTPASASPESDVSSPPS--PDAADSPDA- 180
SSP SSPS +PSP T++PA SP+ D+ +PA ASP+SD SSPPS PDAADSP A
Sbjct: 121 NSPDSSPDSSPSVSPSPATDSPAASPA--DSGSPA-ASPDSDSSSPPSPTPDAADSPVAD 180
BLAST of Sgr016621 vs. NCBI nr
Match:
XP_022983389.1 (mucin-1-like [Cucurbita maxima])
HSP 1 Score: 104.8 bits (260), Expect = 8.1e-19
Identity = 127/250 (50.80%), Postives = 143/250 (57.20%), Query Frame = 0
Query: 1 MARQSVVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSPSSS---------- 60
MA QSV+V AL+FV AVAGA A+APT+SP+ SPAPKS+PS S +SSPSSS
Sbjct: 1 MASQSVLVFALIFVAAVAGAFAEAPTASPSESPAPKSAPSDSEASSPSSSPADTPADTPA 60
Query: 61 --------------------------------------------------PAAAPKASSE 120
PA P ASSE
Sbjct: 61 DTPAETPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPAASSE 120
Query: 121 SSPSPSASAPASSSEAPA-----SSPGSSPSTAPSPVTETPADSPSETDADTPASASPES 180
SSPSP+ASAP S SEAPA SSP SSPS +PSP T++PA SP+ D+ +PA ASP+S
Sbjct: 121 SSPSPAASAPTSPSEAPASNSPDSSPDSSPSVSPSPDTDSPAASPA--DSGSPA-ASPDS 180
BLAST of Sgr016621 vs. ExPASy TrEMBL
Match:
A0A5A7VIK3 (Mucin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11681G00010 PE=4 SV=1)
HSP 1 Score: 123.6 bits (309), Expect = 8.2e-25
Identity = 120/194 (61.86%), Postives = 144/194 (74.23%), Query Frame = 0
Query: 1 MARQSVVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSP-SSSPAAAPKASS 60
MA QSV+V AL+FV AVAG A+APT SP+ SP+PK+SPS S S SP SSSPAA+PKASS
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAASPKASS 60
Query: 61 E-SSPSPSASAPASS------SEAPASSPGSSPSTAPSPVTETP-----ADSPSETDADT 120
E +SPSP+AS+P+SS S++P SSP SSPS +PSP T++P ADSP++ ADT
Sbjct: 61 EATSPSPAASSPSSSSSDAPTSDSPTSSPKSSPSVSPSPATDSPADSPAADSPADNVADT 120
Query: 121 PASASPESDVSSPPSPDAADSPDAAADGPDAAAGPAADSPADAPATAADSGASPLKLTVA 180
P +ASP+SDVSSPPSPDAAD+P AADGP AA GP ADSPAD+PA S + LKLT A
Sbjct: 121 PTAASPDSDVSSPPSPDAADAP-TAADGPMAADGPTADSPADSPAGDDKSSGTDLKLTSA 180
BLAST of Sgr016621 vs. ExPASy TrEMBL
Match:
A0A1S3BND1 (mucin-1 OS=Cucumis melo OX=3656 GN=LOC103491750 PE=4 SV=1)
HSP 1 Score: 123.6 bits (309), Expect = 8.2e-25
Identity = 120/194 (61.86%), Postives = 144/194 (74.23%), Query Frame = 0
Query: 1 MARQSVVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSP-SSSPAAAPKASS 60
MA QSV+V AL+FV AVAG A+APT SP+ SP+PK+SPS S S SP SSSPAA+PKASS
Sbjct: 1 MASQSVLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAASPKASS 60
Query: 61 E-SSPSPSASAPASS------SEAPASSPGSSPSTAPSPVTETP-----ADSPSETDADT 120
E +SPSP+AS+P+SS S++P SSP SSPS +PSP T++P ADSP++ ADT
Sbjct: 61 ETTSPSPAASSPSSSSSDAPTSDSPTSSPKSSPSVSPSPATDSPADSPAADSPADNVADT 120
Query: 121 PASASPESDVSSPPSPDAADSPDAAADGPDAAAGPAADSPADAPATAADSGASPLKLTVA 180
P +ASP+SDVSSPPSPDAAD+P AADGP AA GP ADSPAD+PA S + LKLT A
Sbjct: 121 PTAASPDSDVSSPPSPDAADAP-TAADGPIAADGPTADSPADSPAGDDKSSGTDLKLTSA 180
BLAST of Sgr016621 vs. ExPASy TrEMBL
Match:
A0A0A0LDP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G593190 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 2.3e-19
Identity = 109/180 (60.56%), Postives = 132/180 (73.33%), Query Frame = 0
Query: 1 MARQSVVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSP-SSSPAAAPKASS 60
MA Q+V+V AL+F+ AVAG A+APT SP+ SP+PK+SPS S S SP SSSPA +PKAS
Sbjct: 1 MASQTVLVFALIFLAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSSSPAGSPKASP 60
Query: 61 E-SSPSPSASAPASSSEA-----PASSPGSSPSTAPSPVTETP----------ADSPSET 120
E +SPSP+AS+P+SSS+A P SSP SSPS +PSP T++P ADSP+++
Sbjct: 61 ETTSPSPAASSPSSSSDAPTSNSPTSSPTSSPSVSPSPATDSPSDSPASDSPVADSPADS 120
Query: 121 DADTPASASPESDVSSPPSPDAADSP----DAAADGPDAAAGP-AADSP--ADAPATAAD 156
ADTP +ASP+SDVSSPPSPDAAD+P AAADGP AA GP AAD P AD P TAAD
Sbjct: 121 PADTPTAASPDSDVSSPPSPDAADAPTADGPAAADGPTAADGPTAADGPTAADGP-TAAD 179
BLAST of Sgr016621 vs. ExPASy TrEMBL
Match:
A0A6J1F318 (mucin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441724 PE=4 SV=1)
HSP 1 Score: 105.1 bits (261), Expect = 3.0e-19
Identity = 126/239 (52.72%), Postives = 144/239 (60.25%), Query Frame = 0
Query: 1 MARQS-VVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSPSSSPAA------ 60
MA QS V+V AL+FV AVAGA A+APT++P+ SPAPKS+PS S +SSPSSSPA+
Sbjct: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP 60
Query: 61 ----------------------------------APKASSESSPSPSASAPASSSEAPA- 120
AP ASSESSPSPSASAP S SEAPA
Sbjct: 61 ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPAS 120
Query: 121 ----SSPGSSPSTAPSPVTETPADSPSETDADTPASASPESDVSSPPS--PDAADSPDA- 180
SSP SSPS +PSP T++PA SP+ D+ +PA ASP+SD SSPPS PDAADSP A
Sbjct: 121 NSPDSSPDSSPSVSPSPATDSPAASPA--DSGSPA-ASPDSDSSSPPSPTPDAADSPVAD 180
BLAST of Sgr016621 vs. ExPASy TrEMBL
Match:
A0A6J1J779 (mucin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481994 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 3.9e-19
Identity = 127/250 (50.80%), Postives = 143/250 (57.20%), Query Frame = 0
Query: 1 MARQSVVVLALLFV-AVAGAVAQAPTSSPTASPAPKSSPSGSASSSPSSS---------- 60
MA QSV+V AL+FV AVAGA A+APT+SP+ SPAPKS+PS S +SSPSSS
Sbjct: 1 MASQSVLVFALIFVAAVAGAFAEAPTASPSESPAPKSAPSDSEASSPSSSPADTPADTPA 60
Query: 61 --------------------------------------------------PAAAPKASSE 120
PA P ASSE
Sbjct: 61 DTPAETPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPAASSE 120
Query: 121 SSPSPSASAPASSSEAPA-----SSPGSSPSTAPSPVTETPADSPSETDADTPASASPES 180
SSPSP+ASAP S SEAPA SSP SSPS +PSP T++PA SP+ D+ +PA ASP+S
Sbjct: 121 SSPSPAASAPTSPSEAPASNSPDSSPDSSPSVSPSPDTDSPAASPA--DSGSPA-ASPDS 180
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VIK3 | 8.2e-25 | 61.86 | Mucin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11681G00010 PE=4... | [more] |
| A0A1S3BND1 | 8.2e-25 | 61.86 | mucin-1 OS=Cucumis melo OX=3656 GN=LOC103491750 PE=4 SV=1 | [more] |
| A0A0A0LDP4 | 2.3e-19 | 60.56 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G593190 PE=4 SV=1 | [more] |
| A0A6J1F318 | 3.0e-19 | 52.72 | mucin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441724 PE=4 SV=1 | [more] |
| A0A6J1J779 | 3.9e-19 | 50.80 | mucin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481994 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
