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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGAGCCCAACTATCATGGCATTCCAAACTACACGGTCTTTCTTTTCCATCCCTTGGAAGATTTCCCAAGCTCGAGCCACGCTGCCACATTTAGTGTACATGTCAATTAAAGCTGTCCCGAGGACGGGATTCGACAAGAACTCGTGTTTATCCATCAGGCTGCTGGCCCAGTTGCCTAAATCTAAAGCTCCTAATCTAGCACAAGCAGAGAGAACACCAACCATTGCGTAA mRNA sequence ATGGAGAGCCCAACTATCATGGCATTCCAAACTACACGGTCTTTCTTTTCCATCCCTTGGAAGATTTCCCAAGCTCGAGCCACGCTGCCACATTTAGTGTACATGTCAATTAAAGCTGTCCCGAGGACGGGATTCGACAAGAACTCGTGTTTATCCATCAGGCTGCTGGCCCAGTTGCCTAAATCTAAAGCTCCTAATCTAGCACAAGCAGAGAGAACACCAACCATTGCGTAA Coding sequence (CDS) ATGGAGAGCCCAACTATCATGGCATTCCAAACTACACGGTCTTTCTTTTCCATCCCTTGGAAGATTTCCCAAGCTCGAGCCACGCTGCCACATTTAGTGTACATGTCAATTAAAGCTGTCCCGAGGACGGGATTCGACAAGAACTCGTGTTTATCCATCAGGCTGCTGGCCCAGTTGCCTAAATCTAAAGCTCCTAATCTAGCACAAGCAGAGAGAACACCAACCATTGCGTAA Protein sequence MESPTIMAFQTTRSFFSIPWKISQARATLPHLVYMSIKAVPRTGFDKNSCLSIRLLAQLPKSKAPNLAQAERTPTIA
Homology
BLAST of Sgr014435 vs. NCBI nr
Match: CAA7406701.1 (unnamed protein product [Spirodela intermedia]) HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04 Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 0
Query: 1 MESPTIMAFQTTRSFFSIPWKISQARATLPHLVYMSIKAVPRTGFDKNSCLSIRLLAQLP 60
+ P IMA Q I K +A + PHL YMS +AVPR F + C ++ A P
Sbjct: 30 LHQPLIMAVQVNAFLSGISLKTDRALSMFPHLAYMSTRAVPRATFKRKLCFPMKRSAHTP 89
Query: 61 KSKAPNLAQAERTPTI 77
AP+ AQA++T T+
Sbjct: 90 TPWAPSCAQADKTLTM 105
BLAST of Sgr014435 vs. ExPASy TrEMBL
Match: A0A7I8L9H0 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_13017379 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 6.9e-05 Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 0
Query: 1 MESPTIMAFQTTRSFFSIPWKISQARATLPHLVYMSIKAVPRTGFDKNSCLSIRLLAQLP 60
+ P IMA Q I K +A + PHL YMS +AVPR F + C ++ A P
Sbjct: 30 LHQPLIMAVQVNAFLSGISLKTDRALSMFPHLAYMSTRAVPRATFKRKLCFPMKRSAHTP 89
Query: 61 KSKAPNLAQAERTPTI 77
AP+ AQA++T T+
Sbjct: 90 TPWAPSCAQADKTLTM 105
BLAST of Sgr014435 vs. ExPASy TrEMBL
Match: A0A3Q7JGI3 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.4e-04 Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 0
Query: 1 MESPTIMAFQTTRSFFSIPWKISQARATLPHLVYMSIKAVPRTGFDKNSCLSIRLLAQLP 60
+E P I+A Q T S I K S A PHL+Y+S +AVP T F+ LSI P
Sbjct: 54 IEDPMIIALQATTSRSDILLKTSAALPKSPHLLYISTRAVPITAFNSEHLLSIYECNHFP 113
Query: 61 KSKAPNLAQAE 72
S+AP AQAE
Sbjct: 114 VSRAPACAQAE 124
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| CAA7406701.1 | 1.4e-04 | 38.16 | unnamed protein product [Spirodela intermedia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A7I8L9H0 | 6.9e-05 | 38.16 | Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_13017379 PE=4 SV... | [more] |
| A0A3Q7JGI3 | 3.4e-04 | 45.07 | Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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