Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTCCTTTACGGTATGAATTTCAAATTCTCCAACGACGAGATGAAGAAATACCCAGATTTCATGGATTGCGATACTACGAAAGACCATCATCCTCAACAAGACCACCATAACTCTAGAGGTATTATGCGCTACAGCTCAGCTCCCACCTCTCTTTTTGCGAGTCTCGTCGATGGAACCGAAGGTTTTAACTTGAGCAACAATGGTGGCGGCGGCGGCGGGCTCGAAAACTATCGGTTCATTCGATCTTCAAGCCCTGAGGTGGAGACTATTTTATCGAGATTCATGGTGTCGTGCAATGGAACCATCGATTCTGGATCTCAGAATCTACAAGAAGGAGTGTTCGGAGAGAGGCCAGTAAAGCAAGAAACGGTGGAATTGGTTCAGCAACAAAATGGATACTGCAATCAATATTCTTTAATGGTTAATACGAATTCGATTCATTTTGGGTTCTAG
mRNA sequence
ATGAGTCTCCTTTACGGTATGAATTTCAAATTCTCCAACGACGAGATGAAGAAATACCCAGATTTCATGGATTGCGATACTACGAAAGACCATCATCCTCAACAAGACCACCATAACTCTAGAGGTATTATGCGCTACAGCTCAGCTCCCACCTCTCTTTTTGCGAGTCTCGTCGATGGAACCGAAGGTTTTAACTTGAGCAACAATGGTGGCGGCGGCGGCGGGCTCGAAAACTATCGGTTCATTCGATCTTCAAGCCCTGAGGTGGAGACTATTTTATCGAGATTCATGGTGTCGTGCAATGGAACCATCGATTCTGGATCTCAGAATCTACAAGAAGGAGTGTTCGGAGAGAGGCCAGTAAAGCAAGAAACGGTGGAATTGGTTCAGCAACAAAATGGATACTGCAATCAATATTCTTTAATGGTTAATACGAATTCGATTCATTTTGGGTTCTAG
Coding sequence (CDS)
ATGAGTCTCCTTTACGGTATGAATTTCAAATTCTCCAACGACGAGATGAAGAAATACCCAGATTTCATGGATTGCGATACTACGAAAGACCATCATCCTCAACAAGACCACCATAACTCTAGAGGTATTATGCGCTACAGCTCAGCTCCCACCTCTCTTTTTGCGAGTCTCGTCGATGGAACCGAAGGTTTTAACTTGAGCAACAATGGTGGCGGCGGCGGCGGGCTCGAAAACTATCGGTTCATTCGATCTTCAAGCCCTGAGGTGGAGACTATTTTATCGAGATTCATGGTGTCGTGCAATGGAACCATCGATTCTGGATCTCAGAATCTACAAGAAGGAGTGTTCGGAGAGAGGCCAGTAAAGCAAGAAACGGTGGAATTGGTTCAGCAACAAAATGGATACTGCAATCAATATTCTTTAATGGTTAATACGAATTCGATTCATTTTGGGTTCTAG
Protein sequence
MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDGTEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERPVKQETVELVQQQNGYCNQYSLMVNTNSIHFGF
Homology
BLAST of Sgr011888 vs. NCBI nr
Match:
XP_031745161.1 (transcription factor bHLH130 isoform X2 [Cucumis sativus] >KGN45152.1 hypothetical protein Csa_016690 [Cucumis sativus])
HSP 1 Score: 213.4 bits (542), Expect = 1.4e-51
Identity = 111/151 (73.51%), Postives = 120/151 (79.47%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD+T +HH QQ+H+NS G+MRY SAPTSLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPTSLFASLVDG 60
Query: 61 TEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERP 120
TEGFN SNN GGG E+YRFIRSSSPEVE ILSRFM SCNG DSGS GER
Sbjct: 61 TEGFNSSNN--GGGTREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS--------GERT 120
Query: 121 VKQETVELVQQQNGYCNQYSLMVNTNSIHFG 152
VK+ET E VQQQNG+CNQ S MVNT S+ G
Sbjct: 121 VKEETGEPVQQQNGFCNQPSSMVNTRSVDAG 141
BLAST of Sgr011888 vs. NCBI nr
Match:
XP_011659460.1 (transcription factor bHLH130 isoform X1 [Cucumis sativus])
HSP 1 Score: 213.4 bits (542), Expect = 1.4e-51
Identity = 111/151 (73.51%), Postives = 120/151 (79.47%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD+T +HH QQ+H+NS G+MRY SAPTSLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPTSLFASLVDG 60
Query: 61 TEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERP 120
TEGFN SNN GGG E+YRFIRSSSPEVE ILSRFM SCNG DSGS GER
Sbjct: 61 TEGFNSSNN--GGGTREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS--------GERT 120
Query: 121 VKQETVELVQQQNGYCNQYSLMVNTNSIHFG 152
VK+ET E VQQQNG+CNQ S MVNT S+ G
Sbjct: 121 VKEETGEPVQQQNGFCNQPSSMVNTRSVDAG 141
BLAST of Sgr011888 vs. NCBI nr
Match:
XP_031745162.1 (transcription factor bHLH130 isoform X3 [Cucumis sativus])
HSP 1 Score: 213.4 bits (542), Expect = 1.4e-51
Identity = 111/151 (73.51%), Postives = 120/151 (79.47%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD+T +HH QQ+H+NS G+MRY SAPTSLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPTSLFASLVDG 60
Query: 61 TEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERP 120
TEGFN SNN GGG E+YRFIRSSSPEVE ILSRFM SCNG DSGS GER
Sbjct: 61 TEGFNSSNN--GGGTREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS--------GERT 120
Query: 121 VKQETVELVQQQNGYCNQYSLMVNTNSIHFG 152
VK+ET E VQQQNG+CNQ S MVNT S+ G
Sbjct: 121 VKEETGEPVQQQNGFCNQPSSMVNTRSVDAG 141
BLAST of Sgr011888 vs. NCBI nr
Match:
XP_008461268.1 (PREDICTED: transcription factor bHLH130-like isoform X2 [Cucumis melo])
HSP 1 Score: 211.5 bits (537), Expect = 5.2e-51
Identity = 109/151 (72.19%), Postives = 120/151 (79.47%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD+T +HH QQ+H+NS G+MRY SAP SLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPNSLFASLVDG 60
Query: 61 TEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERP 120
TEGFN SNN GGG E+YRFIRSSSPEVE ILSRFM SCNG DSGS GER
Sbjct: 61 TEGFNSSNN--GGGSREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS--------GERT 120
Query: 121 VKQETVELVQQQNGYCNQYSLMVNTNSIHFG 152
VK+ET E V+QQNG+CNQ S MVNT+S+ G
Sbjct: 121 VKEETGEPVRQQNGFCNQSSSMVNTSSVDSG 141
BLAST of Sgr011888 vs. NCBI nr
Match:
XP_008461269.1 (PREDICTED: transcription factor bHLH130-like isoform X3 [Cucumis melo])
HSP 1 Score: 211.5 bits (537), Expect = 5.2e-51
Identity = 109/151 (72.19%), Postives = 120/151 (79.47%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD+T +HH QQ+H+NS G+MRY SAP SLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPNSLFASLVDG 60
Query: 61 TEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERP 120
TEGFN SNN GGG E+YRFIRSSSPEVE ILSRFM SCNG DSGS GER
Sbjct: 61 TEGFNSSNN--GGGSREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS--------GERT 120
Query: 121 VKQETVELVQQQNGYCNQYSLMVNTNSIHFG 152
VK+ET E V+QQNG+CNQ S MVNT+S+ G
Sbjct: 121 VKEETGEPVRQQNGFCNQSSSMVNTSSVDSG 141
BLAST of Sgr011888 vs. ExPASy TrEMBL
Match:
A0A0A0K9U6 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428890 PE=4 SV=1)
HSP 1 Score: 213.4 bits (542), Expect = 6.6e-52
Identity = 111/151 (73.51%), Postives = 120/151 (79.47%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD+T +HH QQ+H+NS G+MRY SAPTSLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPTSLFASLVDG 60
Query: 61 TEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERP 120
TEGFN SNN GGG E+YRFIRSSSPEVE ILSRFM SCNG DSGS GER
Sbjct: 61 TEGFNSSNN--GGGTREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS--------GERT 120
Query: 121 VKQETVELVQQQNGYCNQYSLMVNTNSIHFG 152
VK+ET E VQQQNG+CNQ S MVNT S+ G
Sbjct: 121 VKEETGEPVQQQNGFCNQPSSMVNTRSVDAG 141
BLAST of Sgr011888 vs. ExPASy TrEMBL
Match:
A0A1S3CEB7 (transcription factor bHLH130-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499905 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 2.5e-51
Identity = 109/151 (72.19%), Postives = 120/151 (79.47%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD+T +HH QQ+H+NS G+MRY SAP SLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPNSLFASLVDG 60
Query: 61 TEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERP 120
TEGFN SNN GGG E+YRFIRSSSPEVE ILSRFM SCNG DSGS GER
Sbjct: 61 TEGFNSSNN--GGGSREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS--------GERT 120
Query: 121 VKQETVELVQQQNGYCNQYSLMVNTNSIHFG 152
VK+ET E V+QQNG+CNQ S MVNT+S+ G
Sbjct: 121 VKEETGEPVRQQNGFCNQSSSMVNTSSVDSG 141
BLAST of Sgr011888 vs. ExPASy TrEMBL
Match:
A0A1S3CER3 (transcription factor bHLH130-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103499905 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 2.5e-51
Identity = 109/151 (72.19%), Postives = 120/151 (79.47%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD+T +HH QQ+H+NS G+MRY SAP SLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPNSLFASLVDG 60
Query: 61 TEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERP 120
TEGFN SNN GGG E+YRFIRSSSPEVE ILSRFM SCNG DSGS GER
Sbjct: 61 TEGFNSSNN--GGGSREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS--------GERT 120
Query: 121 VKQETVELVQQQNGYCNQYSLMVNTNSIHFG 152
VK+ET E V+QQNG+CNQ S MVNT+S+ G
Sbjct: 121 VKEETGEPVRQQNGFCNQSSSMVNTSSVDSG 141
BLAST of Sgr011888 vs. ExPASy TrEMBL
Match:
A0A1S3CEB2 (transcription factor bHLH130-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499905 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 2.5e-51
Identity = 109/151 (72.19%), Postives = 120/151 (79.47%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD+T +HH QQ+H+NS G+MRY SAP SLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCDSTNNHHSQQEHNNSGGLMRYCSAPNSLFASLVDG 60
Query: 61 TEGFNLSNNGGGGGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGERP 120
TEGFN SNN GGG E+YRFIRSSSPEVE ILSRFM SCNG DSGS GER
Sbjct: 61 TEGFNSSNN--GGGSREDYRFIRSSSPEVEVILSRFMASCNGKFDSGS--------GERT 120
Query: 121 VKQETVELVQQQNGYCNQYSLMVNTNSIHFG 152
VK+ET E V+QQNG+CNQ S MVNT+S+ G
Sbjct: 121 VKEETGEPVRQQNGFCNQSSSMVNTSSVDSG 141
BLAST of Sgr011888 vs. ExPASy TrEMBL
Match:
A0A6J1DIE4 (transcription factor bHLH130-like OS=Momordica charantia OX=3673 GN=LOC111020789 PE=4 SV=1)
HSP 1 Score: 198.4 bits (503), Expect = 2.2e-47
Identity = 104/150 (69.33%), Postives = 116/150 (77.33%), Query Frame = 0
Query: 1 MSLLYGMNFKFSNDEMKKYPDFMDCDTTKDHHPQQDHHNSRGIMRYSSAPTSLFASLVDG 60
MSLLY NFKFSNDEMKKYPDFMDCD T +HP QDHHNS G++ Y SAPTSLFASLVDG
Sbjct: 1 MSLLYSTNFKFSNDEMKKYPDFMDCD-TNPNHPPQDHHNSGGLLGYCSAPTSLFASLVDG 60
Query: 61 TEGFNLSNNGGG-GGGLENYRFIRSSSPEVETILSRFMVSCNGTIDSGSQNLQEGVFGER 120
EG N S NGGG GGG E+YR +RSSSPEVE ILSRFM SCNGT+DSGSQ L GE
Sbjct: 61 AEGLNSSENGGGDGGGREDYRLVRSSSPEVEVILSRFMASCNGTVDSGSQGL-----GET 120
Query: 121 PVKQETVELVQQQNGYCNQYSLMVNTNSIH 150
VKQETVE + QQNGY NQ S +++ ++
Sbjct: 121 VVKQETVESIHQQNGYRNQSSSSSSSSMVN 144
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_031745161.1 | 1.4e-51 | 73.51 | transcription factor bHLH130 isoform X2 [Cucumis sativus] >KGN45152.1 hypothetic... | [more] |
| XP_011659460.1 | 1.4e-51 | 73.51 | transcription factor bHLH130 isoform X1 [Cucumis sativus] | [more] |
| XP_031745162.1 | 1.4e-51 | 73.51 | transcription factor bHLH130 isoform X3 [Cucumis sativus] | [more] |
| XP_008461268.1 | 5.2e-51 | 72.19 | PREDICTED: transcription factor bHLH130-like isoform X2 [Cucumis melo] | [more] |
| XP_008461269.1 | 5.2e-51 | 72.19 | PREDICTED: transcription factor bHLH130-like isoform X3 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0K9U6 | 6.6e-52 | 73.51 | BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428890 PE=4 S... | [more] |
| A0A1S3CEB7 | 2.5e-51 | 72.19 | transcription factor bHLH130-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349... | [more] |
| A0A1S3CER3 | 2.5e-51 | 72.19 | transcription factor bHLH130-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349... | [more] |
| A0A1S3CEB2 | 2.5e-51 | 72.19 | transcription factor bHLH130-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349... | [more] |
| A0A6J1DIE4 | 2.2e-47 | 69.33 | transcription factor bHLH130-like OS=Momordica charantia OX=3673 GN=LOC111020789... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
