Sgr006382 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr006382
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionCoatomer subunit gamma
Locationtig00004536: 411 .. 2060 (+)
RNA-Seq ExpressionSgr006382
SyntenySgr006382
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGTCTTCTTCAATTCAAGTCATTTTGCTCTCCTTTCAGGGTACAGAGGTTGTCCCAAGCACTCAAGTCACACGCCTGCCTATATCTGGCGTATACATTGGAACGTGAAGGTACTTGTGCGATTATCATTTGGAATCGATTCTTCAAGAGGTGCGATGAAGCTGGCCGTAAGGTCAGATGATGAAGCCGTTAGCGATGCCATCCATGAGATAGTTGCCAGCGGTTAGTTGGAATTGTAAGGAATTTAATTTTATTGATTTTTGTTTGTGAGCAAAAGTTAGGTCACAGTGGGGCGGGCTACAAAAACAGTCAAATCTTGGTGAAAGAATTTGAAGTTTGAACCAACTTCATTCGGGACGTAGGCACATCTTAGGAGAGTTTGTTGCAGTCTCTATTCCTCATCCCTGTTTTAATGGTTAACTTCGAGAGTGGTTTTCTTGGCGCCTCCCGCCCCGCCCTTCACCCCAAGAAAAAAACGACTAGGAATGGTTGTTCTCATTACTCACTGTCTATTAATATGTGAATGTGATGCATTTTTCTCGAATCGATATTCCGAGTACTTGCCTCTCACCAAAGTTGCATTTGTTGCTGCTTTTCGGCCTTTATTTGCTTGCAATCAGTTGTTTGTTTAAGAAGCTGTCAAAGTTGAATCCGTAGGAGTTTGCTGCCAATTGATTTATGTGTGGTTGAAGGCAAAGGGGTCTTAATTTGTTGCTGTTAATTAGCAAATTAGTGCATATTTTTGTGATGTCAAATGTTACGACACTTCTGCTCTTGCAAACCTTTAATGCCTGTAGCAGATGATAAGAGAATTGTGTCTTGTGAAAATTAATTTTTGAAATCCTGCTATTTTTGCGCAAAAAAGTAGACAATGAATCGAGAAAGCTTAATTCTTAAAACTCGGAAATATGTTTTGATAGCCTCCACTATATATATGGTATTGCAACATCGATAAATTTCATGAGTTACTACTGTATTTGAATGTCCTAATACAAATATTTTGGGCGTTATATTTATTTAATTTTTAAAATTAAAAAATTTAACATCCCTAAATTTTAAATTATGCTTCCAATTGATACACGTCATTAACATCATTAATGAAACATTAACATTTTGGCCAAAATTTATCTAATGGGTGGGTATACCACACCAACATTCCATCCATCCAAAATGTAATCAACTAATCAAAACTTTCTAAAACTTAGAGCCTAAATAAATAATACTCAAAAGTATAAAATTAAATTTATAAATTACCTAAAATAGTATATTATAGTAGCTCATTTTCAAATTACAAAAATAACGAAACGCAAAATCATAAACAAGACTTTATCATATGTAAAATAATCACGTCATTTTTGTAAAAATTCTATTAGATTATTATCAGATAAAAAAAAAAACGAGACAGAAGGTAACAAAAACCTCTGCAGCTCAAGGAAGCCATTTTCACCTTCTTTTTTTAAATAATCATTTTTCTGAATGTTAAGATTGTCTATTTTCCAGAGGAGGTTTACTACAACTTACAAGCAAAGACTATGGATTTACTTACCAAGAATTTGAAGGATTTCAACAAGCAAGAACAATGCGTTTGCATGCATACACAAAACACAGGCCTTGCAGTGAAGGCATTACAGAAAATAGACCTCCCTTAA

mRNA sequence

TTGGTCTTCTTCAATTCAAGTCATTTTGCTCTCCTTTCAGGGTACAGAGGTTGTCCCAAGCACTCAAGTCACACGCCTGCCTATATCTGGCGTATACATTGGAACGTGAAGGTACTTGTGCGATTATCATTTGGAATCGATTCTTCAAGAGGTGCGATGAAGCTGGCCGTAAGGTCAGATGATGAAGCCGTTAGCGATGCCATCCATGAGATAGTTGCCAGCGAGGAGGTTTACTACAACTTACAAGCAAAGACTATGGATTTACTTACCAAGAATTTGAAGGATTTCAACAAGCAAGAACAATGCGTTTGCATGCATACACAAAACACAGGCCTTGCAGTGAAGGCATTACAGAAAATAGACCTCCCTTAA

Coding sequence (CDS)

TTGGTCTTCTTCAATTCAAGTCATTTTGCTCTCCTTTCAGGGTACAGAGGTTGTCCCAAGCACTCAAGTCACACGCCTGCCTATATCTGGCGTATACATTGGAACGTGAAGGTACTTGTGCGATTATCATTTGGAATCGATTCTTCAAGAGGTGCGATGAAGCTGGCCGTAAGGTCAGATGATGAAGCCGTTAGCGATGCCATCCATGAGATAGTTGCCAGCGAGGAGGTTTACTACAACTTACAAGCAAAGACTATGGATTTACTTACCAAGAATTTGAAGGATTTCAACAAGCAAGAACAATGCGTTTGCATGCATACACAAAACACAGGCCTTGCAGTGAAGGCATTACAGAAAATAGACCTCCCTTAA

Protein sequence

LVFFNSSHFALLSGYRGCPKHSSHTPAYIWRIHWNVKVLVRLSFGIDSSRGAMKLAVRSDDEAVSDAIHEIVASEEVYYNLQAKTMDLLTKNLKDFNKQEQCVCMHTQNTGLAVKALQKIDLP
Homology
[Close]
BLAST of Sgr006382 vs. NCBI nr
Match: XP_004150412.1 (coatomer subunit gamma [Cucumis sativus] >KGN44347.1 hypothetical protein Csa_015835 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-08
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFGIDSSR  AMKLAVRSDDE VSDAIHEIVAS
Sbjct: 846 NVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVAS 886

[Close]
BLAST of Sgr006382 vs. NCBI nr
Match: XP_008447037.1 (PREDICTED: coatomer subunit gamma [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-08
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFGIDSSR  AMKLAVRSDDE VSDAIHEIVAS
Sbjct: 846 NVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVAS 886

[Close]
BLAST of Sgr006382 vs. NCBI nr
Match: XP_022135769.1 (coatomer subunit gamma-2 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-08
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFGIDSSR  AMKLAVRSDDE VSDAIHEIVAS
Sbjct: 846 NVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVAS 886

[Close]
BLAST of Sgr006382 vs. NCBI nr
Match: XP_038888265.1 (coatomer subunit gamma-2 [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-08
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFGIDSSR  AMKLAVRSDDE VSDAIHEIVAS
Sbjct: 846 NVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVAS 886

[Close]
BLAST of Sgr006382 vs. NCBI nr
Match: KAA0036605.1 (coatomer subunit gamma [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-08
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFGIDSSR  AMKLAVRSDDE VSDAIHEIVAS
Sbjct: 849 NVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVAS 889

[Close]
BLAST of Sgr006382 vs. ExPASy Swiss-Prot
Match: Q6Z382 (Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0201100 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFG+   +  AMKLAVRSDD  +SD IHEIVA+
Sbjct: 848 NVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVAN 888

[Close]
BLAST of Sgr006382 vs. ExPASy Swiss-Prot
Match: Q8H852 (Coatomer subunit gamma-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0227000 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 19  PKHS-SHTPAYIWRIHWNVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           PK++ SHT         + KVLVRLSFG+   +  AMKLAVRSDD  VSD IHEIVAS
Sbjct: 826 PKNARSHTCLLSGVFIGDAKVLVRLSFGLSGPKEVAMKLAVRSDDPEVSDKIHEIVAS 883

[Close]
BLAST of Sgr006382 vs. ExPASy Swiss-Prot
Match: Q0WW26 (Coatomer subunit gamma OS=Arabidopsis thaliana OX=3702 GN=At4g34450 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVR  FG+DSS+  AMKL VR++D +V++AIHEIVAS
Sbjct: 845 NVKVLVRAQFGMDSSKDIAMKLTVRAEDVSVAEAIHEIVAS 885

[Close]
BLAST of Sgr006382 vs. ExPASy TrEMBL
Match: A0A5A7T578 (Coatomer subunit gamma OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001290 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFGIDSSR  AMKLAVRSDDE VSDAIHEIVAS
Sbjct: 849 NVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVAS 889

[Close]
BLAST of Sgr006382 vs. ExPASy TrEMBL
Match: A0A0A0K7N9 (Coatomer subunit gamma OS=Cucumis sativus OX=3659 GN=Csa_7G267950 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFGIDSSR  AMKLAVRSDDE VSDAIHEIVAS
Sbjct: 846 NVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVAS 886

[Close]
BLAST of Sgr006382 vs. ExPASy TrEMBL
Match: A0A6J1C2E9 (Coatomer subunit gamma OS=Momordica charantia OX=3673 GN=LOC111007649 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFGIDSSR  AMKLAVRSDDE VSDAIHEIVAS
Sbjct: 846 NVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVAS 886

[Close]
BLAST of Sgr006382 vs. ExPASy TrEMBL
Match: A0A1S3BGG7 (Coatomer subunit gamma OS=Cucumis melo OX=3656 GN=LOC103489587 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVRLSFGIDSSR  AMKLAVRSDDE VSDAIHEIVAS
Sbjct: 846 NVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVAS 886

[Close]
BLAST of Sgr006382 vs. ExPASy TrEMBL
Match: A0A4P1R197 (Coatomer subunit gamma OS=Lupinus angustifolius OX=3871 GN=TanjilG_17292 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.1e-08
Identity = 39/57 (68.42%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 19  PKHSSHTPAYIWRIHWNVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           P   SHT         NVKVLVRLSFG+D  +  AMKLAVRSDDEAVSDAIHEIVAS
Sbjct: 830 PNSRSHTCLMSGVFIGNVKVLVRLSFGLDGPKDVAMKLAVRSDDEAVSDAIHEIVAS 886

[Close]
BLAST of Sgr006382 vs. TAIR 10
Match: AT4G34450.1 (coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 35  NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
           NVKVLVR  FG+DSS+  AMKL VR++D +V++AIHEIVAS
Sbjct: 845 NVKVLVRAQFGMDSSKDIAMKLTVRAEDVSVAEAIHEIVAS 885

[Close]
BLAST of Sgr006382 vs. TAIR 10
Match: AT2G16200.1 (structural molecules )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 35 NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
          NVKVLV+  FG+DSS+   MKLAVR++D +VSDAIH +VA+
Sbjct: 28 NVKVLVKAQFGMDSSKEIVMKLAVRAEDPSVSDAIHALVAN 68

[Close]
BLAST of Sgr006382 vs. TAIR 10
Match: AT2G16200.2 (structural molecules )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 35 NVKVLVRLSFGIDSSRG-AMKLAVRSDDEAVSDAIHEIVAS 75
          NVKVLV+  FG+DSS+   MKLAVR++D +VSDAIH +VA+
Sbjct: 42 NVKVLVKAQFGMDSSKEIVMKLAVRAEDPSVSDAIHALVAN 82

The following BLAST results are available for this feature:
BLAST of Sgr006382 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150412.17.5e-0892.68coatomer subunit gamma [Cucumis sativus] >KGN44347.1 hypothetical protein Csa_01... [more]
XP_008447037.17.5e-0892.68PREDICTED: coatomer subunit gamma [Cucumis melo][more]
XP_022135769.17.5e-0892.68coatomer subunit gamma-2 [Momordica charantia][more]
XP_038888265.17.5e-0892.68coatomer subunit gamma-2 [Benincasa hispida][more]
KAA0036605.17.5e-0892.68coatomer subunit gamma [Cucumis melo var. makuwa][more]
BLAST of Sgr006382 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6Z3821.5e-0670.73Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g020110... [more]
Q8H8522.5e-0658.62Coatomer subunit gamma-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g022700... [more]
Q0WW262.5e-0668.29Coatomer subunit gamma OS=Arabidopsis thaliana OX=3702 GN=At4g34450 PE=1 SV=2[more]
BLAST of Sgr006382 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T5783.7e-0892.68Coatomer subunit gamma OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A0A0K7N93.7e-0892.68Coatomer subunit gamma OS=Cucumis sativus OX=3659 GN=Csa_7G267950 PE=3 SV=1[more]
A0A6J1C2E93.7e-0892.68Coatomer subunit gamma OS=Momordica charantia OX=3673 GN=LOC111007649 PE=3 SV=1[more]
A0A1S3BGG73.7e-0892.68Coatomer subunit gamma OS=Cucumis melo OX=3656 GN=LOC103489587 PE=3 SV=1[more]
A0A4P1R1978.1e-0868.42Coatomer subunit gamma OS=Lupinus angustifolius OX=3871 GN=TanjilG_17292 PE=3 SV... [more]
BLAST of Sgr006382 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G34450.11.8e-0768.29coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 CO... [more]
AT2G16200.11.2e-0663.41structural molecules [more]
AT2G16200.21.2e-0663.41structural molecules [more]
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012295TBP domain superfamilyGENE3D3.30.310.10coord: 5..73
e-value: 6.8E-5
score: 25.0
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainSUPERFAMILY55711Subdomain of clathrin and coatomer appendage domaincoord: 21..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr006382.1Sgr006382.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0009306 protein secretion
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030126 COPI vesicle coat
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005793 endoplasmic reticulum-Golgi intermediate compartment
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0030117 membrane coat
molecular_function GO:0005198 structural molecule activity