Sed0027802 (gene) Chayote v1

Overview


Name	Sed0027802
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	LG06: 4701533 .. 4702476 (+)
RNA-Seq Expression	Sed0027802
Synteny	Sed0027802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCAAAATCGTGTCTTCTCTTTCAGTTTTCTCACTGTAACAAAAATGGCTTCCACTCTCTCCACAGCTTCTCTCCGATTCCCATCTTCTTCTTTCCCTTCAAATCTCTCCAATTCCACCAAACCCACTTCTCTCCATCTCCCCTTTTCATTCTCCGCCACCAACCCCCCTCTCCGCCTCCTTCATCTCCGCCCAATCTCCGCCGCCGCCGTGCCGGAAAAGGTTGCAGAAATCGGCGATGTCATCTCCAAATTGACGCTCGAGGAGGCTCGAACCCTCGTCGATTACCTCCAAGAGAAGCTCGGTGTGTCCGCTGCTTCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCTGGCGCTGCCGGCGGCGAGGATGCGGCCGCCGCCGCCGTCGAGGAGAAGACGGAGTTTGACGTGGTTATTGAGTCTGTGCCGGCGAATGCGAGGATTACTGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCTAAGGATTTAATCGAAGGTTTGCCGAAGAAGTTTAAGGAAGGAATCTCGAAGGAAGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAAGCTGGTGCGACCATTGCTATCGTTTGATCTCGTGGCTGGTCAGTATCTTGAATTTTCAAGGTTTATTTACAATTCTTAGGTGTTATGGTGGAATTAGAGATGGGGTTTTTTTGTGGATTGTTAATTTGTGATTCATTTAGTTGATTTTCTGTTGATGAATGCCTCATTGTTACTGAATTTGTGTGCTCATTTCTGTATTGCTGTAGCTGTGTTTATATGTTTTATATGTTCTGTTTTGTTGCACGTTATGTGTTTGTTAAAATGTCTACAAGAAGCTTTTCTTAGACATTCTGGTTTAAAATTAGAGATGGGGAATTCTTTTTTCAATTGTTGATGAATGGTTTCAATTTTCTTTGAAA

mRNA sequence

CCCCAAAATCGTGTCTTCTCTTTCAGTTTTCTCACTGTAACAAAAATGGCTTCCACTCTCTCCACAGCTTCTCTCCGATTCCCATCTTCTTCTTTCCCTTCAAATCTCTCCAATTCCACCAAACCCACTTCTCTCCATCTCCCCTTTTCATTCTCCGCCACCAACCCCCCTCTCCGCCTCCTTCATCTCCGCCCAATCTCCGCCGCCGCCGTGCCGGAAAAGGTTGCAGAAATCGGCGATGTCATCTCCAAATTGACGCTCGAGGAGGCTCGAACCCTCGTCGATTACCTCCAAGAGAAGCTCGGTGTGTCCGCTGCTTCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCTGGCGCTGCCGGCGGCGAGGATGCGGCCGCCGCCGCCGTCGAGGAGAAGACGGAGTTTGACGTGGTTATTGAGTCTGTGCCGGCGAATGCGAGGATTACTGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCTAAGGATTTAATCGAAGGTTTGCCGAAGAAGTTTAAGGAAGGAATCTCGAAGGAAGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAAGCTGGTGCGACCATTGCTATCGTTTGATCTCGTGGCTGGTCAGTATCTTGAATTTTCAAGGTTTATTTACAATTCTTAGGTGTTATGGTGGAATTAGAGATGGGGTTTTTTTGTGGATTGTTAATTTGTGATTCATTTAGTTGATTTTCTGTTGATGAATGCCTCATTGTTACTGAATTTGTGTGCTCATTTCTGTATTGCTGTAGCTGTGTTTATATGTTTTATATGTTCTGTTTTGTTGCACGTTATGTGTTTGTTAAAATGTCTACAAGAAGCTTTTCTTAGACATTCTGGTTTAAAATTAGAGATGGGGAATTCTTTTTTCAATTGTTGATGAATGGTTTCAATTTTCTTTGAAA

Coding sequence (CDS)

ATGGCTTCCACTCTCTCCACAGCTTCTCTCCGATTCCCATCTTCTTCTTTCCCTTCAAATCTCTCCAATTCCACCAAACCCACTTCTCTCCATCTCCCCTTTTCATTCTCCGCCACCAACCCCCCTCTCCGCCTCCTTCATCTCCGCCCAATCTCCGCCGCCGCCGTGCCGGAAAAGGTTGCAGAAATCGGCGATGTCATCTCCAAATTGACGCTCGAGGAGGCTCGAACCCTCGTCGATTACCTCCAAGAGAAGCTCGGTGTGTCCGCTGCTTCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCTGGCGCTGCCGGCGGCGAGGATGCGGCCGCCGCCGCCGTCGAGGAGAAGACGGAGTTTGACGTGGTTATTGAGTCTGTGCCGGCGAATGCGAGGATTACTGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAGGCTAAGGATTTAATCGAAGGTTTGCCGAAGAAGTTTAAGGAAGGAATCTCGAAGGAAGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAAGCTGGTGCGACCATTGCTATCGTTTGA

Protein sequence

MASTLSTASLRFPSSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAAVPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQLEEAGATIAIV

Homology

[Close]

BLAST of Sed0027802 vs. NCBI nr
Match: XP_008443526.1 (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo] >KAA0053661.1 50S ribosomal protein L12 [Cucumis melo var. makuwa] >TYK00831.1 50S ribosomal protein L12 [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-69
Identity = 163/193 (84.46%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 1   MASTLSTASLRFP-----SSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAA 60
           M+STLSTASLR P     SSS+PSN S+S KPT L  PFSF+ TN  LRL+H RPISA A
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAV 120
           VPEKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAA G D AAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIE VP+NARI VIKAVRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGATIAIV 189
           KQLEEAGA IAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of Sed0027802 vs. NCBI nr
Match: XP_038903222.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-69
Identity = 162/191 (84.82%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MASTLSTASLRFPS---SSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAAVP 60
           M+STLSTASLR PS   SS+PSN S+S KPT L+ PFSFS+TN  LRL+H RPISA AVP
Sbjct: 1   MSSTLSTASLRSPSSSLSSYPSNFSHSLKPTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60

Query: 61  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEE 120
           EKV+EIGDVIS+LTLEEARTLVDYLQEKLGVSAASFAPA VAVAPGAA G D AAAAVEE
Sbjct: 61  EKVSEIGDVISQLTLEEARTLVDYLQEKLGVSAASFAPAVVAVAPGAAAGGDDAAAAVEE 120

Query: 121 KTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE VP+NARI VIKAVRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGATIAIV 189
           LEEAGA IAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sed0027802 vs. NCBI nr
Match: XP_022152130.1 (50S ribosomal protein L12, chloroplastic-like [Momordica charantia])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 159/191 (83.25%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 1   MASTLSTASLRFP---SSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAAVP 60
           MASTLSTASLR P   SSS+PSN S S +P SLH PFS S+ N   RL+HLRP+SAAA P
Sbjct: 1   MASTLSTASLRSPSCSSSSYPSNFSQSPRPFSLHFPFSPSSNNLSHRLVHLRPVSAAAAP 60

Query: 61  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEE 120
           EKV EIGDVISKLTLEEAR LVDYLQEKLGVSAA+FAPAAVAVAPGA  G D AAAAVEE
Sbjct: 61  EKVVEIGDVISKLTLEEARILVDYLQEKLGVSAAAFAPAAVAVAPGAGAGGDVAAAAVEE 120

Query: 121 KTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE VP+NARI VIKAVRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGATIAIV 189
           LEEAGA IAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sed0027802 vs. NCBI nr
Match: KAG7022725.1 (50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266.2 bits (679), Expect = 2.2e-67
Identity = 159/191 (83.25%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MASTLSTASLRFP---SSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAAVP 60
           MASTLSTASL+FP   SSSFPS  S+S K  SLH P S S++N  LRL+HLRP+SA AVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEE 120
           EKV EIGDVISKLTLEEAR LVDYLQ+KLGVSAA+FAPAAV VAPG+AGGED AAAAVEE
Sbjct: 61  EKVTEIGDVISKLTLEEARVLVDYLQDKLGVSAAAFAPAAVVVAPGSAGGED-AAAAVEE 120

Query: 121 KTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE VP+NARI VIKAVRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGATIAIV 189
           LEEAGA IAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of Sed0027802 vs. NCBI nr
Match: KAG6588957.1 (50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265.8 bits (678), Expect = 2.9e-67
Identity = 159/191 (83.25%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MASTLSTASLRFP---SSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAAVP 60
           MASTLSTASL+FP   SSSFPS  S+S K  SLH P S S++N  LRL+HLRP+SA AVP
Sbjct: 1   MASTLSTASLQFPSCSSSSFPSKFSHSPKSKSLHFPSSLSSSNLSLRLVHLRPLSATAVP 60

Query: 61  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEE 120
           EKV EIGDVISKLTLEEAR LVDYLQ+KLGVSAA+FAPAAV VAPG+AGGED AAAAVEE
Sbjct: 61  EKVTEIGDVISKLTLEEARILVDYLQDKLGVSAAAFAPAAVVVAPGSAGGED-AAAAVEE 120

Query: 121 KTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE VP+NARI VIKAVRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGATIAIV 189
           LEEAGA IAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of Sed0027802 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.1e-48
Identity = 125/195 (64.10%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 1   MASTLSTASLRFPSSSFPSNLSNSTKPTSLHLPFSFSATNPPLRL--LH------LRPIS 60
           MASTLST +LR PS S  S+       T   +PF   A   P+R   LH      LRP++
Sbjct: 1   MASTLSTITLRSPSPSTASS-------THASIPFPKKALEFPIRTPKLHHRRATFLRPLA 60

Query: 61  AAAVPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAA 120
           A   PEKV ++GD IS LTL +A+ LV+YLQ+KLGV+AASFAPAAVA APGAA     A 
Sbjct: 61  AVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA---EAP 120

Query: 121 AAVEEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAE 180
           A VEEKTEFDVVI+ VP+NARI  IKAVRALTSLALKEAK+LIEGLPKKFKEG+SK+EAE
Sbjct: 121 AVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAE 180

Query: 181 DAKKQLEEAGATIAI 188
           DAKKQLEEAGA ++I
Sbjct: 181 DAKKQLEEAGAKVSI 185

[Close]

BLAST of Sed0027802 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.9e-47
Identity = 122/195 (62.56%), Postives = 141/195 (72.31%), Query Frame = 0


Query: 1   MASTLSTASLRFPSSSFPSNLSNSTKPTSLHLPF-----SFSATNPPL---RLLHLRPIS 60
           MASTLST +LR PS S       +   T   +PF      F    P L   R   LRP++
Sbjct: 1   MASTLSTITLRSPSPS-------TATSTHASIPFPKKTLEFPIRTPKLQNRRATFLRPLA 60

Query: 61  AAAVPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAA 120
           A   PEKV ++GD IS LTL +A+ LV+YLQ+KLGV+AASFAPAAV  APGAA     A 
Sbjct: 61  AVEAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAP 120

Query: 121 AAVEEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAE 180
           A VEEKTEFDVVI+ VP+NARI  IKAVRALTSLALKEAK+LIEGLPKKFKEG+SK+EAE
Sbjct: 121 AVVEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAE 180

Query: 181 DAKKQLEEAGATIAI 188
           DAKKQLEEAGA ++I
Sbjct: 181 DAKKQLEEAGAKVSI 185

[Close]

BLAST of Sed0027802 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 6.5e-46
Identity = 118/193 (61.14%), Postives = 143/193 (74.09%), Query Frame = 0


Query: 1   MASTLSTASLRFPS-SSFPSNLSNSTKPTSLHLPFSFSATNP----PLRLLHLRPISAAA 60
           MA+T + A+L  PS +S P++ +    P  L  PF  + TNP      R   LRPI+A  
Sbjct: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFR-TTTNPISLSSTRTTRLRPIAAVE 60

Query: 61  VPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAV 120
            PEK+ ++G  +S LTLEEAR LVD+LQ+KLGVSAASFAPAA   APGA      AA AV
Sbjct: 61  APEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AAPAV 120

Query: 121 EEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDV I+ VP+NARI+VIKAVRALTSL LKEAK+LIEGLPKK KEG+SK++AEDAK
Sbjct: 121 EEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAK 180

Query: 181 KQLEEAGATIAIV 189
           KQLE+AGA ++IV
Sbjct: 181 KQLEDAGAKVSIV 189

[Close]

BLAST of Sed0027802 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 2.7e-44
Identity = 117/190 (61.58%), Postives = 142/190 (74.74%), Query Frame = 0


Query: 1   MASTLSTASLRFPSSSFPSNLSNS---TKPTSLHLPFSFSATNPPLRLLHLRPISAAAVP 60
           MAST  + +    SSS  ++ S     +KPT++  PF  S+++   R ++LRPISA   P
Sbjct: 1   MASTTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSSSH-RAINLRPISAVEAP 60

Query: 61  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEE 120
           EK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A GG   AAA VEE
Sbjct: 61  EKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAVVEE 120

Query: 121 KTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQ 180
           +TEFDVVI  VP+++RI VIKAVRALTSLALKEAK+LIEGLPKKFKEGI+K+EAE+AKK 
Sbjct: 121 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKT 180

Query: 181 LEEAGATIAI 188
           LEEAGA ++I
Sbjct: 181 LEEAGAKVSI 186

[Close]

BLAST of Sed0027802 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.8e-43
Identity = 116/193 (60.10%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 1   MASTLSTASLRFPSSSFPSNLSNS---TKPTSLHLPFSF---SATNPPLRLLHLRPISAA 60
           MAST  + +    SSS+P+  S +   ++ T++  P  F   S++    R  HLRPI+A 
Sbjct: 1   MASTTLSIATTIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAV 60

Query: 61  AVPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAA 120
             PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A GG   AAA 
Sbjct: 61  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAV 120

Query: 121 VEEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDA 180
           VEE+TEFDVVI  VP+++RI VIKAVRALTSLALKEAK+LIEGLPKKFKEGI+K+EAE+A
Sbjct: 121 VEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEA 180

Query: 181 KKQLEEAGATIAI 188
           KK LEEAGA ++I
Sbjct: 181 KKTLEEAGAKVSI 190

[Close]

BLAST of Sed0027802 vs. ExPASy TrEMBL
Match: A0A5A7UJJ4 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00330 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.7e-70
Identity = 163/193 (84.46%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 1   MASTLSTASLRFP-----SSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAA 60
           M+STLSTASLR P     SSS+PSN S+S KPT L  PFSF+ TN  LRL+H RPISA A
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAV 120
           VPEKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAA G D AAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIE VP+NARI VIKAVRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGATIAIV 189
           KQLEEAGA IAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of Sed0027802 vs. ExPASy TrEMBL
Match: A0A1S3B8B3 (50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487096 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.7e-70
Identity = 163/193 (84.46%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 1   MASTLSTASLRFP-----SSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAA 60
           M+STLSTASLR P     SSS+PSN S+S KPT L  PFSF+ TN  LRL+H RPISA A
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAV 120
           VPEKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAA G D AAAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIE VP+NARI VIKAVRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGATIAIV 189
           KQLEEAGA IAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of Sed0027802 vs. ExPASy TrEMBL
Match: A0A6J1DD25 (50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111019918 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.3e-68
Identity = 159/191 (83.25%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 1   MASTLSTASLRFP---SSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAAVP 60
           MASTLSTASLR P   SSS+PSN S S +P SLH PFS S+ N   RL+HLRP+SAAA P
Sbjct: 1   MASTLSTASLRSPSCSSSSYPSNFSQSPRPFSLHFPFSPSSNNLSHRLVHLRPVSAAAAP 60

Query: 61  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEE 120
           EKV EIGDVISKLTLEEAR LVDYLQEKLGVSAA+FAPAAVAVAPGA  G D AAAAVEE
Sbjct: 61  EKVVEIGDVISKLTLEEARILVDYLQEKLGVSAAAFAPAAVAVAPGAGAGGDVAAAAVEE 120

Query: 121 KTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE VP+NARI VIKAVRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGATIAIV 189
           LEEAGA IAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Sed0027802 vs. ExPASy TrEMBL
Match: A0A0A0LHZ4 (Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.8e-67
Identity = 157/191 (82.20%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 1   MASTLSTASLRFP---SSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAAVP 60
           M+STLSTASLR P   SSS+PSN S+S KPT L  PFSF+ TN  LRL+H RPISA AVP
Sbjct: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVAVP 60

Query: 61  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEE 120
           EKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPA   VAPG A G D AAAAVEE
Sbjct: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAPATVAPGTAAGGDDAAAAVEE 120

Query: 121 KTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE VP+NARI VIK+VRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGATIAIV 189
           LEEAGA I+IV
Sbjct: 181 LEEAGAKISIV 191

[Close]

BLAST of Sed0027802 vs. ExPASy TrEMBL
Match: A0A6J1F403 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441912 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.8e-67
Identity = 158/191 (82.72%), Postives = 170/191 (89.01%), Query Frame = 0


Query: 1   MASTLSTASLRFP---SSSFPSNLSNSTKPTSLHLPFSFSATNPPLRLLHLRPISAAAVP 60
           M+S LSTASLRFP   SSS+PSN S+S + TS+  PFSFS+TN  LR +H RP+SAAAVP
Sbjct: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEE 120
           EKV EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAV VAPGAA G D  AAAVEE
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGD-DAAAVEE 120

Query: 121 KTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIE VP+NARI+VIKAVRALTSLALKEAK+LIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGATIAIV 189
           LEEAGA IAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of Sed0027802 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-45
Identity = 117/190 (61.58%), Postives = 142/190 (74.74%), Query Frame = 0


Query: 1   MASTLSTASLRFPSSSFPSNLSNS---TKPTSLHLPFSFSATNPPLRLLHLRPISAAAVP 60
           MAST  + +    SSS  ++ S     +KPT++  PF  S+++   R ++LRPISA   P
Sbjct: 1   MASTTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSSSH-RAINLRPISAVEAP 60

Query: 61  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAAVEE 120
           EK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A GG   AAA VEE
Sbjct: 61  EKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAVVEE 120

Query: 121 KTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDAKKQ 180
           +TEFDVVI  VP+++RI VIKAVRALTSLALKEAK+LIEGLPKKFKEGI+K+EAE+AKK 
Sbjct: 121 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKT 180

Query: 181 LEEAGATIAI 188
           LEEAGA ++I
Sbjct: 181 LEEAGAKVSI 186

[Close]

BLAST of Sed0027802 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-44
Identity = 116/193 (60.10%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 1   MASTLSTASLRFPSSSFPSNLSNS---TKPTSLHLPFSF---SATNPPLRLLHLRPISAA 60
           MAST  + +    SSS+P+  S +   ++ T++  P  F   S++    R  HLRPI+A 
Sbjct: 1   MASTTLSIATTIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAV 60

Query: 61  AVPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAAA 120
             PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  S APAA AVA  A GG   AAA 
Sbjct: 61  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAV 120

Query: 121 VEEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAEDA 180
           VEE+TEFDVVI  VP+++RI VIKAVRALTSLALKEAK+LIEGLPKKFKEGI+K+EAE+A
Sbjct: 121 VEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEA 180

Query: 181 KKQLEEAGATIAI 188
           KK LEEAGA ++I
Sbjct: 181 KKTLEEAGAKVSI 190

[Close]

BLAST of Sed0027802 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 100/195 (51.28%), Postives = 133/195 (68.21%), Query Frame = 0


Query: 1   MASTLSTASLRFPSSSFPSNLSNS----TKPTSLHLPFSF---SATNPPLRLLHLRPISA 60
           MA+T  + +    SSSF S L+++    ++P S+  PFSF   S++    R ++L PISA
Sbjct: 1   MAATTLSIATTIRSSSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISA 60

Query: 61  AAVPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGGEDAAAA 120
              P+K+ +IG  IS LTLEE+R LVDY+Q+K GVS    APAA A+ P    G   A A
Sbjct: 61  VKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNG--GATA 120

Query: 121 AVEEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEGISKEEAED 180
           +VE +T FDVVI  VP   RI VI A+RA+TSL+L E+K+LIEG PKKFKEG++K+EAE+
Sbjct: 121 SVERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEE 180

Query: 181 AKKQLEEAGATIAIV 189
            K QLEEAGA ++IV
Sbjct: 181 DKTQLEEAGAKVSIV 193

[Close]

BLAST of Sed0027802 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-14
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 52  SAAAVPEKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPG-------- 111
           S A   E V++I + +S LTL E   L + L++KL +S     P   A+ PG        
Sbjct: 37  SPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISE---LPVMAAMMPGMSLPGSGA 96

Query: 112 --AAGGEDAAAAAVEEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKK 171
             +AGGE       E KT FDV++++  A ++I VIK VR +T+L LKEAKDL+E  P  
Sbjct: 97  SKSAGGE-GKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTL 156

Query: 172 FKEGISKEEAEDAKKQLEEAGATIAI 188
            K+G+SKEEAE   ++L+  GA +A+
Sbjct: 157 LKKGVSKEEAEKIIEKLKAVGAKVAM 178

[Close]

BLAST of Sed0027802 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 64.7 bits (156), Expect = 9.1e-11
Identity = 50/142 (35.21%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 58  EKVAEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAGG---------- 117
           ++V  + D IS LTL E   L   + +K G++     P    + PGA GG          
Sbjct: 69  DRVFRLVDEISSLTLLEISELGSIIMKKKGMTE---LPTVAVMKPGAGGGVGVGGGGGMV 128

Query: 118 --EDAAAAAVEEKTEFDVVIESVPANARITVIKAVRALTSLALKEAKDLIEGLPKKFKEG 177
                +  A  EKT F++ +ES  A+A+I +IK +R+ T L LKEAK L+E  P   K G
Sbjct: 129 SQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAG 188

Query: 178 ISKEEAEDAKKQLEEAGATIAI 188
           +SKEE E   ++L+  GA + +
Sbjct: 189 LSKEEGEKILEKLKALGAKVVL 207

The following BLAST results are available for this feature:

BLAST of Sed0027802 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443526.1	1.4e-69	84.46	PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo] >KAA0053...	[more]
XP_038903222.1	1.8e-69	84.82	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]
XP_022152130.1	1.3e-67	83.25	50S ribosomal protein L12, chloroplastic-like [Momordica charantia]	[more]
KAG7022725.1	2.2e-67	83.25	50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
KAG6588957.1	2.9e-67	83.25	50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Sed0027802 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24929	3.1e-48	64.10	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P36688	5.9e-47	62.56	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P02398	6.5e-46	61.14	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36212	2.7e-44	61.58	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36210	1.8e-43	60.10	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of Sed0027802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJJ4	6.7e-70	84.46	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B8B3	6.7e-70	84.46	50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1DD25	6.3e-68	83.25	50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0LHZ4	1.8e-67	82.20	Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1	[more]
A0A6J1F403	1.8e-67	82.72	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Sed0027802 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27850.1	1.9e-45	61.58	ribosomal protein L12-C	[more]
AT3G27830.1	1.3e-44	60.10	ribosomal protein L12-A	[more]
AT3G27840.1	1.1e-37	51.28	ribosomal protein L12-B	[more]
AT4G36420.1	1.4e-14	40.41	Ribosomal protein L12 family protein	[more]
AT1G70190.1	9.1e-11	35.21	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 59..107 e-value: 6.4E-13 score: 48.2
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 121..187 e-value: 5.0E-25 score: 87.7
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 58..116 e-value: 3.3E-13 score: 51.4
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 59..123
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 117..187 e-value: 3.7E-26 score: 93.0
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 116..187
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 61..187 e-value: 7.0E-33 score: 111.7
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..187
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 55..188 score: 22.749073
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 58..187 e-value: 1.21477E-39 score: 129.583
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027802.1	Sed0027802.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome