Sed0027684 (gene) Chayote v1

Overview
NameSed0027684
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
LocationLG03: 41092839 .. 41093288 (+)
RNA-Seq ExpressionSed0027684
SyntenySed0027684
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCGGTCGTTCGAAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACCGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTACGAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGAAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTTATCTAATTAG

mRNA sequence

ATGGGAGCGGTCGTTCGAAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACCGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTACGAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGAAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTTATCTAATTAG

Coding sequence (CDS)

ATGGGAGCGGTCGTTCGAAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACCGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTACGAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGAAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTTATCTAATTAG

Protein sequence

MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIEDLPEAAYACYERDKLSVAIQQPLISTLSN
Homology
BLAST of Sed0027684 vs. NCBI nr
Match: XP_030934661.1 (uncharacterized protein LOC115960098 [Quercus lobata])

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-18
Identity = 51/130 (39.23%), Postives = 81/130 (62.31%), Query Frame = 0

Query: 1    MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK 60
            +GA++RND G VMAA  + I     VE+ E LA R  + +A +LGF ++ VE D+EI++K
Sbjct: 1026 LGAIIRNDMGLVMAAFTQHIPLPTSVEMVEVLAARGALCFAKDLGFNKVVVEGDSEIIIK 1085

Query: 61   KLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIE 120
             L++N +  S  G +L DI+ ++++L   +F+   R+ N VAHGL R A  + +F+ W+E
Sbjct: 1086 ALSSNGLSASSFGHILQDIKSVSSSLGGVLFNHTRRQGNRVAHGLARMACNFVNFQSWME 1145

Query: 121  DLPEAAYACY 131
            D+P      Y
Sbjct: 1146 DVPPGVIDVY 1155

BLAST of Sed0027684 vs. NCBI nr
Match: XP_023887146.1 (uncharacterized protein LOC111999255 [Quercus suber])

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-17
Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 0

Query: 1   MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK 60
           +GA++RND G VMAA    I     VE+ E LA R  + +A ELGF  + VE D+EIV+K
Sbjct: 109 LGAIIRNDLGPVMAAFTHLIPLPTSVEMVEVLAARSALCFAKELGFNNIIVEGDSEIVIK 168

Query: 61  KLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIE 120
            L+ N    S +G ++ D++ LA++L    F+   R+ N VAHGL R A  +  F+ W+E
Sbjct: 169 ALSTNGPSFSSIGHIVKDVKVLASSLGNVSFNHTRRQGNRVAHGLARLACNFIHFQSWME 228

Query: 121 DLPEAAYACY 131
           D+P A    Y
Sbjct: 229 DVPPAVEGVY 238

BLAST of Sed0027684 vs. NCBI nr
Match: XP_023918538.1 (uncharacterized protein LOC112030088 [Quercus suber])

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-16
Identity = 46/137 (33.58%), Postives = 83/137 (60.58%), Query Frame = 0

Query: 1   MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK 60
           +G+++RNDRG VMA + + I     VE+ E LA R  + +A ELGF ++ +E D+EI ++
Sbjct: 53  LGSIIRNDRGLVMATLTQIIPLPTFVEMVEVLAARRALIFAKELGFEKVILEGDSEIAIR 112

Query: 61  KLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIE 120
            + ++    +  G ++ DI+ L+++  C IF    R+ N VAH L R A  +  F  W+E
Sbjct: 113 AMKSDAYSATPFGHIVSDIKALSSHFRCLIFQHTCRQRNLVAHSLARAACNFPPFYTWME 172

Query: 121 DLPEAAYACYERDKLSV 138
           ++P +++A Y  + +++
Sbjct: 173 EVPISSHAMYLAESINI 189

BLAST of Sed0027684 vs. NCBI nr
Match: XP_023889222.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112001275 [Quercus suber])

HSP 1 Score: 94.7 bits (234), Expect = 7.0e-16
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 0

Query: 1    MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK 60
            +GA++RND G VMAA    I     VE+ E LA R  + +A ELGF  + VE D+EIV+K
Sbjct: 1493 LGAIIRNDLGLVMAAFTHLIPLPTSVEMVEVLAARSALCFAKELGFNNIIVEGDSEIVIK 1552

Query: 61   KLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIE 120
             L+ N    S +G ++ D++ LA++L    F+   R+ N VAHGL R A  +  F+ W+E
Sbjct: 1553 ALSTNGPSFSSIGHIVKDVKVLASSLGNVFFNHTRRQGNRVAHGLARLACNFIHFQSWME 1612

Query: 121  DLPEA 126
             +P A
Sbjct: 1613 GVPPA 1617

BLAST of Sed0027684 vs. NCBI nr
Match: XP_023879227.1 (uncharacterized protein LOC111991659 [Quercus suber])

HSP 1 Score: 94.7 bits (234), Expect = 7.0e-16
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 0

Query: 1   MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK 60
           +GA++RND G VMAA+ + I     VE  E LA R  + +A ELGF  + +E D++I ++
Sbjct: 165 LGAIIRNDHGLVMAALTQVIPLPTSVETVEVLAARRALYFAQELGFDHIILEGDSDIAIR 224

Query: 61  KLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIE 120
            +  +    +  G +L DI+ L++N    +F+   +R N VAH L R A  +     WIE
Sbjct: 225 AMKEDSFSAASFGHILADIKVLSSNFRHLVFNHTRKRGNKVAHSLARAACNFFPICTWIE 284

Query: 121 DLPEAAYACY 131
           D+PEA+   Y
Sbjct: 285 DVPEASVVVY 294

BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A2N9FY90 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19997 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15
Identity = 46/133 (34.59%), Postives = 79/133 (59.40%), Query Frame = 0

Query: 1   MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK 60
           +G ++RN+ G  M A+++ I       V EALA+R  +  A+E+GF+ + +E D+E+VV+
Sbjct: 382 IGVIIRNEMGLPMIALSQKIPYPGSSAVMEALALRRALLLAIEMGFQSVVMEGDSEMVVR 441

Query: 61  KLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIE 120
           + +      S  G ++ D+Q+LA  ++ C+FS   R+AN VAH L RRA    D+  W+E
Sbjct: 442 EASMWGAFLSSYGHIIADVQQLAAQMDVCVFSHTRRQANQVAHALARRACNVLDYETWME 501

Query: 121 DLPEAAYACYERD 134
            +P   ++  + D
Sbjct: 502 SVPPELWSVLQND 514

BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A3B6PTX4 (RNase H domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 45/123 (36.59%), Postives = 74/123 (60.16%), Query Frame = 0

Query: 1   MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK 60
           +G V+RN  G V+AA  + + Q +  E+ EA+A+R  +++A E GF+ + V +D E +V 
Sbjct: 3   IGIVIRNHLGVVLAAKRRYVNQEVNPELAEAIAMRCAMEFAEEAGFQSIVVASDCETLVT 62

Query: 61  KLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIE 120
           K+ N  +DRS +GA+  DI+  A+N   C+F+  +R  N  AH L R + E++   CW  
Sbjct: 63  KVKNVAMDRSQIGAITFDIKSRASNFVSCLFTHINRSCNEAAHVLARSS-EHDCGSCWFN 122

Query: 121 DLP 124
            +P
Sbjct: 123 VVP 124

BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A7J9IBE0 (RNase H domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_021366 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14
Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 0

Query: 2   GAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKK 61
           G V+RN+ G VM +       V      EALA    I +A ++GFR++ VE D+  ++ K
Sbjct: 31  GVVIRNNLGLVMGSGVVLYSHVADAFAAEALACLHAITFARDMGFRKVVVEGDSRTIIVK 90

Query: 62  LANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIED 121
           +   V+DRS +G  + +I+ +A N +   F   DR +N VAH + +   +  + +CW+E+
Sbjct: 91  VQKGVLDRSAIGVYVKEIRIMALNFDYISFQHADRESNLVAHTIAKMGFKIGNSQCWVEE 150

Query: 122 LPEAAYACYERDK 135
           +P    A  E+D+
Sbjct: 151 VPPDTVAVIEKDR 163

BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A3B6MST5 (RNase H domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 44/124 (35.48%), Postives = 74/124 (59.68%), Query Frame = 0

Query: 1   MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK 60
           +G V+RN  G V+AA  + + Q +  E+ EA+A+R  +++A E GF+ + V +D E +V 
Sbjct: 17  IGIVIRNHLGVVLAAKRRYVNQEVNPELAEAMAMRCALEFAEEAGFQSIVVASDCETLVT 76

Query: 61  KLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIE 120
           K+ N  +DRS +GA+  DI+  A+    C+F+  +R  N  AH L R + E++   CW  
Sbjct: 77  KVKNVAMDRSQIGAITFDIKRGASKFVSCLFTNINRSCNEAAHVLARSS-EHDCGSCWFN 136

Query: 121 DLPE 125
            +P+
Sbjct: 137 VVPD 139

BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A446KQ86 (RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_2Av1G043170 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.5e-13
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 0

Query: 1   MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK 60
           +G V+RN  G V+AA    I  V   E+GEA+A+R  + +A + GF+++ VETD+  ++ 
Sbjct: 3   IGVVIRNHLGRVLAASRGFIHYVDNPELGEAIAMRHALFFAEDSGFQKILVETDSASLIN 62

Query: 61  KLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIE 120
           K+ + + DRS  GAV+ DI+  A+    C F+   R  N  AH L + A E+++  CW  
Sbjct: 63  KIKSKMDDRSHTGAVIFDIKSRASRFLSCCFTHISRSCNEAAHVLAKSA-EHDEGSCWFN 122

Query: 121 DLPE 125
             PE
Sbjct: 123 VSPE 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030934661.13.3e-1839.23uncharacterized protein LOC115960098 [Quercus lobata][more]
XP_023887146.13.7e-1741.54uncharacterized protein LOC111999255 [Quercus suber][more]
XP_023918538.15.3e-1633.58uncharacterized protein LOC112030088 [Quercus suber][more]
XP_023889222.17.0e-1641.60LOW QUALITY PROTEIN: uncharacterized protein LOC112001275 [Quercus suber][more]
XP_023879227.17.0e-1636.92uncharacterized protein LOC111991659 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9FY904.9e-1534.59RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19997 ... [more]
A0A3B6PTX43.2e-1436.59RNase H domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1[more]
A0A7J9IBE07.0e-1432.33RNase H domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_0213... [more]
A0A3B6MST52.7e-1335.48RNase H domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1[more]
A0A446KQ863.5e-1337.10RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=T... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..112
e-value: 1.0E-13
score: 53.5
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..109
e-value: 4.8E-25
score: 87.8
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 2..124
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 2..124
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 2..107
e-value: 7.03809E-18
score: 72.3468
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027684.1Sed0027684.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity