Sed0027684 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGCGGTCGTTCGAAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACCGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTACGAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGAAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTTATCTAATTAG ATGGGAGCGGTCGTTCGAAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACCGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTACGAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGAAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTTATCTAATTAG ATGGGAGCGGTCGTTCGAAATGATCGCGGAGAAGTTATGGCTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACCGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTGCGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTGATCGTCGAGCAAACTCTGTGGCACATGGCCTTACGAGAAGAGCATTGGAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGAAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTTATCTAATTAG MGAVVRNDRGEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCDRRANSVAHGLTRRALEYEDFRCWIEDLPEAAYACYERDKLSVAIQQPLISTLSN Homology
BLAST of Sed0027684 vs. NCBI nr
Match: XP_030934661.1 (uncharacterized protein LOC115960098 [Quercus lobata]) HSP 1 Score: 102.4 bits (254), Expect = 3.3e-18 Identity = 51/130 (39.23%), Postives = 81/130 (62.31%), Query Frame = 0
BLAST of Sed0027684 vs. NCBI nr
Match: XP_023887146.1 (uncharacterized protein LOC111999255 [Quercus suber]) HSP 1 Score: 99.0 bits (245), Expect = 3.7e-17 Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 0
BLAST of Sed0027684 vs. NCBI nr
Match: XP_023918538.1 (uncharacterized protein LOC112030088 [Quercus suber]) HSP 1 Score: 95.1 bits (235), Expect = 5.3e-16 Identity = 46/137 (33.58%), Postives = 83/137 (60.58%), Query Frame = 0
BLAST of Sed0027684 vs. NCBI nr
Match: XP_023889222.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112001275 [Quercus suber]) HSP 1 Score: 94.7 bits (234), Expect = 7.0e-16 Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 0
BLAST of Sed0027684 vs. NCBI nr
Match: XP_023879227.1 (uncharacterized protein LOC111991659 [Quercus suber]) HSP 1 Score: 94.7 bits (234), Expect = 7.0e-16 Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 0
BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A2N9FY90 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19997 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15 Identity = 46/133 (34.59%), Postives = 79/133 (59.40%), Query Frame = 0
BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A3B6PTX4 (RNase H domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14 Identity = 45/123 (36.59%), Postives = 74/123 (60.16%), Query Frame = 0
BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A7J9IBE0 (RNase H domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_021366 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 7.0e-14 Identity = 43/133 (32.33%), Postives = 73/133 (54.89%), Query Frame = 0
BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A3B6MST5 (RNase H domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13 Identity = 44/124 (35.48%), Postives = 74/124 (59.68%), Query Frame = 0
BLAST of Sed0027684 vs. ExPASy TrEMBL
Match: A0A446KQ86 (RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_2Av1G043170 PE=4 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 3.5e-13 Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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