Sed0027472 (gene) Chayote v1

Overview
NameSed0027472
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG13: 1541662 .. 1542456 (+)
RNA-Seq ExpressionSed0027472
SyntenySed0027472
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACCACAACTTTAGGTTCTTGGAAGGTTGTCTTCTTTGCTTTCCTTCTTCTTGCTTTCCATGTTTGTGCGAGGGACCTCGTTCGGACCGACACAGTGGCTCGATCATCTTGTAAGTGTCCTCTTTTCCTAGTATCTTTAGTTGAAATATTACTCAACTGACTCCGAAACTTGAGATAGGTGCACATGCCTTGAGTTATGTACATTTACAAAAAAAGATATTATGTCGATGGAGGATATACTGACGTTAACCTAACAGTTGGCTTATCATAGCATATGCTGATGGTAAACACAGTCGACGGAACATGTAAAATATAGATTGACGTTGTAAGAAAACCGTCGGTCTAGTTACACCGATAGGCGACAGTTTTTATATCGTTCACGTATATCAAACTATATATCGATGGTAAATTCCAAACGTCTTTCTATTTCATATTTTTCTCCCAAAAACTAAAAAAAGAGGGATAAATTATGAAAATACGATTTGCGAACTACCCATAAATTTGTGTAATCTTTTCGTTATGTTATTCGATATTCGTTTTTGTCATAACAATACAATTAGTCCATTGTTCATATGTTCAACATATTTAGATCGAAAATAGAGGGAGAAATAATGCATTGTTTTTACTAATTAACCCTACTTTAATTTTGTTTTTAATAGGTGAGGGGAAGATAATTAAGATGAATGGAATGAAGGGCAGGAGATTAATTGTTAGAGAGTTAGATGGGGCTTGGAGGGGAAACTATGCAAACCCTCCTCCTCCTCCAATTGCTCCAGTTTCTATTTAA

mRNA sequence

ATGGCTTCCACCACAACTTTAGGTTCTTGGAAGGTTGTCTTCTTTGCTTTCCTTCTTCTTGCTTTCCATGTTTGTGCGAGGGACCTCGTTCGGACCGACACAGTGGCTCGATCATCTTGTGAGGGGAAGATAATTAAGATGAATGGAATGAAGGGCAGGAGATTAATTGTTAGAGAGTTAGATGGGGCTTGGAGGGGAAACTATGCAAACCCTCCTCCTCCTCCAATTGCTCCAGTTTCTATTTAA

Coding sequence (CDS)

ATGGCTTCCACCACAACTTTAGGTTCTTGGAAGGTTGTCTTCTTTGCTTTCCTTCTTCTTGCTTTCCATGTTTGTGCGAGGGACCTCGTTCGGACCGACACAGTGGCTCGATCATCTTGTGAGGGGAAGATAATTAAGATGAATGGAATGAAGGGCAGGAGATTAATTGTTAGAGAGTTAGATGGGGCTTGGAGGGGAAACTATGCAAACCCTCCTCCTCCTCCAATTGCTCCAGTTTCTATTTAA

Protein sequence

MASTTTLGSWKVVFFAFLLLAFHVCARDLVRTDTVARSSCEGKIIKMNGMKGRRLIVRELDGAWRGNYANPPPPPIAPVSI
Homology
BLAST of Sed0027472 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 1  MASTTTLGSWK-VVFFAFLLLAFHVCARDLVRTDTVARSSCEGKIIKMNGMKGRRLIVRE 60
          MAS +    WK VVFFA LLLAF+V AR+LV T+ VAR+  E   + +    GRRLI R+
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHE---MTIETNVGRRLIARQ 60

Query: 61 LDGAWRGNYANPPP--PPIAP 79
          LD +W GNY+ PPP  PP  P
Sbjct: 61 LDTSWGGNYSPPPPRRPPPPP 78

BLAST of Sed0027472 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-08
Identity = 43/82 (52.44%), Postives = 53/82 (64.63%), Query Frame = 0

Query: 1  MASTTTLGSWK-VVFFAFLLLAFHVCARDLVRTDTVARSSCEGKIIKMNGMKGRRLIVRE 60
          MAS +    WK VVFFA LLLAF+V AR+LV T+ VAR+  E   + +    GRRLI R+
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHE---MTIETNVGRRLIARQ 60

Query: 61 LDGAWRGNYANPPP---PPIAP 79
          LD +W GNY+ PPP   PP  P
Sbjct: 61 LDTSWGGNYSPPPPRRRPPPPP 79

BLAST of Sed0027472 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-07
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 1  MASTTTLGSW-KVVFFAFLLLAFHVCARDLVRTDTVARSSCEGKIIKMNGMKGRRLIVRE 60
          MAS T L +W KV F  FLL+A  V AR+L   + V R++ E   +    + G RLI R+
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIGGSRLIARQ 60

Query: 61 LDGAWRGNYANPPP--PPIAPVS 81
          LD AWRG+Y+ PPP  PP  P S
Sbjct: 61 LDTAWRGHYSPPPPRSPPPPPHS 83

BLAST of Sed0027472 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-07
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 1  MASTTTLGSW-KVVFFAFLLLAFHVCARDLVRTDTVARSSCEGKIIKMNGMKGRRLIVRE 60
          MAS T L +W KV F  FLL+A  V AR+L   + V R++ E   +    + G RLI R+
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIVGSRLIARQ 60

Query: 61 LDGAWRGNYANPPP--PPIAPVS 81
          LD AWRG+Y+ PPP  PP  P S
Sbjct: 61 LDTAWRGHYSPPPPRSPPPPPHS 83

BLAST of Sed0027472 vs. NCBI nr
Match: KGN57260.1 (hypothetical protein Csa_011296 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-07
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 3  STTTLGS--WK--VVFFAFLLLAFHVCARDLVRTDTVARSSCEGKI-IKMNGMKGRRLIV 62
          +T T+ S  WK  ++FF  LLLA+++ AR+L     VAR++CE  +  +MN +  RRL V
Sbjct: 2  ATATIASVAWKKVIIFFTLLLLAYNISAREL-----VARTTCEPSLTTEMNDVIDRRLFV 61

Query: 63 RELDGAWRGNYANPPPPP 76
          R+LD +WRGNY  PP PP
Sbjct: 62 RQLDTSWRGNYFPPPKPP 74

BLAST of Sed0027472 vs. ExPASy TrEMBL
Match: A0A0A0L5K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 3  STTTLGS--WK--VVFFAFLLLAFHVCARDLVRTDTVARSSCEGKI-IKMNGMKGRRLIV 62
          +T T+ S  WK  ++FF  LLLA+++ AR+L     VAR++CE  +  +MN +  RRL V
Sbjct: 2  ATATIASVAWKKVIIFFTLLLLAYNISAREL-----VARTTCEPSLTTEMNDVIDRRLFV 61

Query: 63 RELDGAWRGNYANPPPPP 76
          R+LD +WRGNY  PP PP
Sbjct: 62 RQLDTSWRGNYFPPPKPP 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6600178.11.7e-0853.09hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030841.12.2e-0852.44hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6576804.11.9e-0746.99hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014831.11.9e-0746.99hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN57260.12.5e-0747.44hypothetical protein Csa_011296 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5K71.2e-0747.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027472.1Sed0027472.1mRNA