Sed0027459 (gene) Chayote v1

Overview
NameSed0027459
Typegene
OrganismSechium edule (Chayote v1)
DescriptionNADH:ubiquinone oxidoreductase, ESSS subunit
LocationLG14: 2038927 .. 2039289 (-)
RNA-Seq ExpressionSed0027459
SyntenySed0027459
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTCGCCAACGCCGTTCACCGCCGCCTCCAATATGCTCCGCCACCGCCTCCTCCCTTCTCTCCGGACTCGCGGCGGCGCCGCCGCAGGCCCGAGCCGGTGGACCAGTCCCGGCCACGAGGAGCGTCCCAAGGGCTACCTCTTCAATCGCACGCCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATATCACCAGCTTTCTCACCATCGTCATCCTCGGCGTTGGCCTCAACGCCAAGCCCGATCTCACCATCGAGACTTGGGCTCACCAGAAAGCCCTAGAGCGCCTCGAGATGGAGAATCTGGCTTTGTCCGACTCCGGATCATCGGAATCCGATTGA

mRNA sequence

ATGCCGTCGCCAACGCCGTTCACCGCCGCCTCCAATATGCTCCGCCACCGCCTCCTCCCTTCTCTCCGGACTCGCGGCGGCGCCGCCGCAGGCCCGAGCCGGTGGACCAGTCCCGGCCACGAGGAGCGTCCCAAGGGCTACCTCTTCAATCGCACGCCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATATCACCAGCTTTCTCACCATCGTCATCCTCGGCGTTGGCCTCAACGCCAAGCCCGATCTCACCATCGAGACTTGGGCTCACCAGAAAGCCCTAGAGCGCCTCGAGATGGAGAATCTGGCTTTGTCCGACTCCGGATCATCGGAATCCGATTGA

Coding sequence (CDS)

ATGCCGTCGCCAACGCCGTTCACCGCCGCCTCCAATATGCTCCGCCACCGCCTCCTCCCTTCTCTCCGGACTCGCGGCGGCGCCGCCGCAGGCCCGAGCCGGTGGACCAGTCCCGGCCACGAGGAGCGTCCCAAGGGCTACCTCTTCAATCGCACGCCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATATCACCAGCTTTCTCACCATCGTCATCCTCGGCGTTGGCCTCAACGCCAAGCCCGATCTCACCATCGAGACTTGGGCTCACCAGAAAGCCCTAGAGCGCCTCGAGATGGAGAATCTGGCTTTGTCCGACTCCGGATCATCGGAATCCGATTGA

Protein sequence

MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSESD
Homology
BLAST of Sed0027459 vs. NCBI nr
Match: XP_023517134.1 (uncharacterized protein LOC111780983 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA G SRWTSPGHEERPKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLA+S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSASGSSESD 120

BLAST of Sed0027459 vs. NCBI nr
Match: XP_022925065.1 (uncharacterized protein LOC111432424 [Cucurbita moschata] >KAG6595653.1 hypothetical protein SDJN03_12206, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027613.1 hypothetical protein SDJN02_11627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.0 bits (606), Expect = 4.1e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA G SRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLA+S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120

BLAST of Sed0027459 vs. NCBI nr
Match: XP_022966491.1 (uncharacterized protein LOC111466129 [Cucurbita maxima])

HSP 1 Score: 237.7 bits (605), Expect = 5.4e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA G SRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLA+S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

BLAST of Sed0027459 vs. NCBI nr
Match: XP_022151653.1 (uncharacterized protein LOC111019565 [Momordica charantia])

HSP 1 Score: 236.9 bits (603), Expect = 9.2e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPSP PFT ASNMLRHRLLP+LRTRGGAAAG SRWTSPGHEERPKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPAPFTRASNMLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSESD 120
           KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEN+ +S SGSSESD
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

BLAST of Sed0027459 vs. NCBI nr
Match: XP_038881129.1 (uncharacterized protein LOC120072731 [Benincasa hispida])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPSPTPFT ASNMLRHRLLPSLRTRGGAAAG SRWTSPGHE+RPKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGVSGSGSSESD 120

BLAST of Sed0027459 vs. ExPASy TrEMBL
Match: A0A6J1EGU8 (uncharacterized protein LOC111432424 OS=Cucurbita moschata OX=3662 GN=LOC111432424 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.0e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA G SRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLA+S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120

BLAST of Sed0027459 vs. ExPASy TrEMBL
Match: A0A6J1HPH2 (uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA G SRWTSPGHEE+PKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLA+S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

BLAST of Sed0027459 vs. ExPASy TrEMBL
Match: A0A6J1DCT8 (uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019565 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.4e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPSP PFT ASNMLRHRLLP+LRTRGGAAAG SRWTSPGHEERPKGYLFNRTPPPPGQSR
Sbjct: 1   MPSPAPFTRASNMLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSESD 120
           KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEN+ +S SGSSESD
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

BLAST of Sed0027459 vs. ExPASy TrEMBL
Match: I3NMS3 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.6e-54
Identity = 105/118 (88.98%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPS  PFT AS+MLR RL  SLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR
Sbjct: 1   MPSQQPFTTASSMLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSE 119
           KWEDWELPCYITSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME L  S SG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

BLAST of Sed0027459 vs. ExPASy TrEMBL
Match: A0A067KZT1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.8e-53
Identity = 105/118 (88.98%), Postives = 105/118 (88.98%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPSP PFT AS MLR RL  SLRTRGG AAG SRWTSPGHEERPKGYLFNRTPPP GQSR
Sbjct: 1   MPSPQPFTTASTMLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGSSE 119
           KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L LS SG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

BLAST of Sed0027459 vs. TAIR 10
Match: AT2G42310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 175.3 bits (443), Expect = 3.0e-44
Identity = 84/116 (72.41%), Postives = 91/116 (78.45%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           MPS    T A+  LR+R+       G  +AGPSRW +PGHEERPKGY  NRTPP PGQSR
Sbjct: 1   MPSTQSLTVAAKTLRNRI---FSRSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGS 117
           KWEDWELPCYITSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME LA +   S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

BLAST of Sed0027459 vs. TAIR 10
Match: AT3G57785.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-43
Identity = 84/116 (72.41%), Postives = 92/116 (79.31%), Query Frame = 0

Query: 1   MPSPTPFTAASNMLRHRLLPSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60
           M S  P   A+  LR+R+    R+ G  + GPSRW +PGHEERPKGY  NRTPPPPGQSR
Sbjct: 1   MASTKPLIVAAKTLRNRI--HFRS-GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSR 60

Query: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLALSDSGS 117
           KWEDWELPCYITSFLTIVILGVGLNAKPDL+IETWAHQKALERLEME LA +   S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLASAGDSS 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023517134.12.4e-5994.17uncharacterized protein LOC111780983 [Cucurbita pepo subsp. pepo][more]
XP_022925065.14.1e-5993.33uncharacterized protein LOC111432424 [Cucurbita moschata] >KAG6595653.1 hypothet... [more]
XP_022966491.15.4e-5993.33uncharacterized protein LOC111466129 [Cucurbita maxima][more]
XP_022151653.19.2e-5993.33uncharacterized protein LOC111019565 [Momordica charantia][more]
XP_038881129.11.2e-5893.33uncharacterized protein LOC120072731 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EGU82.0e-5993.33uncharacterized protein LOC111432424 OS=Cucurbita moschata OX=3662 GN=LOC1114324... [more]
A0A6J1HPH22.6e-5993.33uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129... [more]
A0A6J1DCT84.4e-5993.33uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
I3NMS39.6e-5488.98Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1[more]
A0A067KZT12.8e-5388.98Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G42310.13.0e-4472.41unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G57785.11.5e-4372.41unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..60
NoneNo IPR availablePANTHERPTHR40637ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEINcoord: 10..111
NoneNo IPR availablePANTHERPTHR40637:SF3BNAA03G19790D PROTEINcoord: 10..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027459.1Sed0027459.1mRNA