Sed0027178 (gene) Chayote v1

Overview


Name	Sed0027178
Type	gene
Organism	Sechium edule (Chayote v1)
Description	malignant T-cell-amplified sequence 1 homolog
Location	LG04: 3293331 .. 3306587 (-)
RNA-Seq Expression	Sed0027178
Synteny	Sed0027178

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAGGCTATGGCCCAAAAGGGAACAACAATCCAATGATACAAAACAAAAAGCCCAAAGTTCCGGCCCAAATTCTCCGACCGGCTTTAAACTCACGCAACCGCCGCCCGCCGGTCGGTTAATTGTTCTCTGTTCTCAGCTTCCGGCTCACACTCTTACGATCTCCTCACCGATACATTGTTTCGCATTTTACACAGATTCTGTTCAATTAACTTTTCGGCATCATGTTCAAAAAGTGAGCTCTCTTTCATATCTCTATACCTCGTTTTCAGCTATGATTTCACGTTGTTTGATGATTGTGGAAATTGATTTCTGGGTTTTGTTTATTCGGGGTTGAAACTATGAGCAATTTGTTGGATTTCTTCGCTTGTTGTCGTATTTTCTTGTTACCTGTTTCTGGGTTTTGCTCCAATGGTGTCTTTTTTTTTCTCGTTTTAATGGTGAGTTCGTTTGTGGGGTTCCGTTTAATTCCTGTTTGTTTGTGTTTTTCGGCTGCTGTGGATGTACTGCTGTGTCTAATTTTCAACATTTTGGAAATATTTCACACGCCATTCATGATTTGAAATGAGGGGTTATTTTGAGGGATTAGAAATTTGATTTATAGTAATAGTTCTTTTGGATGTGGGTATTTGTAGAGAAGTTGCATGTTTGGATGTGCTTAGAAATGAATTGTTAGAAATGAATAATTAGACATGAATTATTAGTTAGAAATAAATTATTACTTTATGTGGTTAGAAATGAGTGATTACTTTGTGTGATTAGAAATGAATGATTATTTTGAGTGTTTACAATTGTTCGTTTTGATGTGATTGGTTGAGGAGGAGTTGTAAAAGCTCATTTGTAATAGCTCGTTAATTACCTCAAACAAACACCCCCTTAGTAATAGGATGTTTACTTGTGTAATTGGTGGGTGTGTGTAATGGGTTCCCCTACCATCTCTTCGCGAGGTGTTGTTTGTGTACATCCTTCAATTTTGTCCTTTTTGTTTGTGTCTGTTTCATTTCAGGTTCTCTACTGAAGAAGTGTCTGCTCAGAATCAAGTCAAGGCATCGGTGCAACGGAGAATTCGGCAAAGTATAGCGGAAGAAGTGAGTATTAGATTATGGATTTGAAGCTCAGTATCATATTAGTAAGATAGCAATTGATGTCTTTATCTGTATTCTGTGTTATGTCTTTTTGTTGCAGTATCCAGGACTAGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGTCCCTCTGATTGTAACTAAGTGGTTAGTAATCTGTTAGCTTCTATTCTTACACAAATAGTTGACATTAGATTTATTTGTTTTGGTTTGTTAATGAACATATGAGGCTCATGTTGGATGTTTTTTGAACCACTCTTATAGTCAGAACCATCTCAATCTGGTTGTTGTCAACAATGTGCCACTCTTTTTCAATATCCGCGATGGACCCTACATGCCTACCCTAAGGTTGCTTCATCAATGTAATGTTTTCTTTCTCTGAGAACTAAATTTGATATCGTTTATAAGATCTATTTAATACTCTTTTTGTCAGCCCTATATTTTCAAGGTTGTTTTAATGAGAAACAAACTTTTCATTGATATATGAAAAGATAGAAACACTTTTGAGGATACAAACTCGAAAAGTCGAAAGCAAAACTTCAAATATTACAAGAGACTGATTATAAAATATTGAAGAATAAAATGTGAAAGACCTCGACAGGATAACATGCCAAAGCAACCAAAAAATCAGCCATTTGAAATGAAAAAGTTGCACATCACAATGAAAGTTGAAAATTCGAGGACTCCAACCCCTAAGCCCCAAACTCCAATAATGGAAAAAGTTATACGTGTATTTTGGTAGGTTAGTATTATTGTTCCTAACTAAAATGTTGCTGATTAGTTGGTCTCTCATCTCTGTTTCCCATGCATATTGTCCTTACCAATACCTCGATCCTCCCCCTGGAGGTAAGAATTTTTTTGTTTGTGGTATCCTTTTTTTTTTTTTTAAGTTTTCTACCAACACTTGAATGTTGTTCAAGCAATTTGTTCTGGAAGTCCAATCTACTGTCTTCTTATTTTATTTGAAATCTTCATCAAGTTAATCTTGGTTATTGGACATTGTGTTGTGTAAGGGTTCCTTTTTCATGGGTGAGTATGGATTTGGAGGAAGGATGTTGCCTTGTCCTTAGGAAATTTATTTTAGTGGCTTCAAAATTTTGAGATGGTTGGGCCTTGGCAATGTCATTGTTAGATAAGTGTCGTAATGTTGGCAAAATAATACCTTCAAAGAATCCCCAAGGAGAAATATATGTCCTTTATTACAAAGCTTTAGCTGGAAAATATTGGACTGTCTTGACTGTTCATCCGTTGGTACTAGTGTTCAAATTTAGCTCACAAGCTTAGCCTTTGGAACGTTTTTTGGCTGCTTTGTCTCATTTTCTCATAATTTTATGCCTTCACCTAGAGGCTACATGCAATCAAGACGTTTTGATTTTTTTTTTTTTTGATAAATGGGAATTGGAGTTTTGCCCCCACTAAACACCCGATGGGCACCTGCACCTATCCCAAGGTCCGGACCCTTCAAGTCGTTTGGAAAGTAAGAGTTGGGTTGCTGGGAAATTTATCTTTGTTCGTTTAGGCAACATAATCTTCCTAATATAGTTGTAGTGATTTTTGTGAAATGAGTGGGCATTGCAGAGTGATAATGTTCATGAAATCATACGATTGAAGAGTGACTTGAAATTCAAAAGGTTATGGGTTCAATCTATGGTGACCGCCTACCTAAGAAATAATTTCCTGAGCTCTCCTTAAATGTTGTAGGGTCAGACATTATTTCATGAGAATAGTCGAGGTTAGCATTAGTATTCTGGGAGTTCATGTTTGTTTCCCAGTTCGGCCTATCCATTCCTCCACTCGTTCTACTTGTACCCTCATTCCTCTAACCTGTAGGTTTACAGGATTTGTTCCCAGCGTTGTGAGGTGGCGCATGCACTCGAACATGGGCTAAATATCATGCCGGAAAATCCAAAGGATCAACATGTCAAGTTGCATAAGCGGGTTAGAACACTCTCAGATATTTATAAATAAAAAAAAAAATAAAAAAATCACCCACGATATTCTAGAATCCAAAGCAGAAGATATATATATTTAAATCTTCATCGAGAAAACTGATAGAATCTACTACTATTATTATTAAGAAACTATGATAATCTCTCGAGAGGATCTCTCAAAGAGCCAAATACAAAGACAACAACTGTTTGAATGAATTGCTAGAGGCCTAACATGACCTATTTATAGTAAACCTAGTATTTAACCTAATTTAGTAAATAATCCCCATTAAGGCCCAAAAGCCCAATACAACTTAAATAACAAAACATAATTATATTTAATAAAGCAATAAAAGAGATCCGTCACTTCTTGGTTAGCCTTGAGTAAACTTTCAATGACCCCGTGTTCGTATCAATACTTCCCCCCCCAAAGAGCCACCTTGTCCTCAAGGTGAAAATCCGGAAATTGGAGCTCTAGATCTGCAGCAGACTCCCAAGTAGCGTCGTCCGGAGTGGATCCTTCCCATTGGATCAAAACTTGGCGCGAACCTCCTCCTGCGAGGGACTCGTAGACCCAAAACAGCCTCGGGACAAACGAGCACGCCTAGATCATCTCCTACCAAAGCGGTGTCGGAAAACAAGCCCAGAGGAACCCACCGCCTTGCGTAGCACTTTTAAACATGAAAACCGGTGAATCTTACCGTCTGTGGTAAGTCCAATCGATGACGCCACAGTGCCCCACCCGAGCTAACACACGCGATATGGCCCGATGAACCGTGGTGCTAACTTGGGGTGTGTAAACTTCGCCAAGGACGATCAGCGGTAGGGTCGGAGCTTAACATACACCAAATCGTCCACATCATACTGAACATCCCGGCGCTTTGCGTTAGCACGCTCCGTCATTAATTGCTGTGAACGCAACAAATTTGCCTTAAGCTTCTCCAACATTCGATCTTGTTCCATCATTAAGGAATCCACTTTGTTGCTCTGGGACTAGCCCCATAATCATAACCCAAAATGGTCGTGAGAACGCCTCGTAAACAATTTCAAAAGGAGTCATCCCCATGGATGAGTGAAAAGACGTATTGAAATCGAACTCACCCAAGCCACCCCAATGTATTTGGACTTCGGTGTGTCAACACAAAGCATCGTAGGTATGATTCTAAATGGGCCGATTGACGACCTCGGTTTGGCCATCGGTTTGTGGGTGGTAGGTAGTACTTCGACGTAGCCGAGTCCCGAAGCCTTGAATATCTCTTCCCGCAGGAGGCTAGTGAATATCTTGTCACGGTCCGACACGATACTCTTAGGCACTCCATGCAAGCGGACCACTTCCACTGATAAAGACTGCGTGACAATTGAAAGAGAAGTAAATGGGTGCCTAAGGGGTATAAAGTGCGCGTGCTTAGATAGCCGATCCACCACCACAAAAATAGTGTCATAACCTTCGCGGGAAGTCCTTCAACAAAATCCATCGAAATGTCCTCCCAAATCCTGCTCGGAATCGGTAATAGATTGCAACAAACCACCGGGGACAACGATAGATGCTTCGCGAACACGGATCGAACATTCGCCACAAATGCGCTGAACGCGAGCCTTCATTCCAGCCAATAGACCTCTTTAGCGAGGCGTTGGTACGTCTTTAGGACCCCAAAATGTCCCCCGATGGCCCCCCCGTGGAACTCATTCAGTAACAGAGGAATCGTAGGCGAAGCCGGAGGTAGCACCAACCGTCCCTGATATAATAGCACATCACCCATGACGGAATAACCTGGCGGACCCTCCTCTCCCGCAACTACAAAGACTATAAATAGCAAACAACTTTGCATCTTCCTCAAGCACTTGTTGAGTGAACACCGCCGTGTTAACTCCGACCACACAACTCAACATGCTCAACTCCCGGTCGATGGCATACGAGAAAGGGCATCTGCGCGCTCTGCTTTCTAATCCTTTCTTGTATTCAATATGGAAATCATAACTCAAGAGTTTCGCCATCCATCGCTGGTACTCCCCATCAACTACAAAGTTGTTCGAGCGAGAATTTAAGGCTCTTTTGATCCGTACGTACAATAAAGTGGTGTCCTAATAGGTAAGCTCGCCAACGCTGGACTGCAAACACGATAGCCATTAGCTCGCGCTCATAAACTGACTTCACGCGATGTGTAAGGGGAAGAGCCTTACTGAAATAGGCCAACGGTACATCCCTCGTTGCATCGAAAGATCGCACTCCACGCCAATACCGTAAGCATCCGTCTCCACAACAAACAAGCGATCAAAGTCCGGCAATCGCAATACTGGCACACTACTCATTGCATGCTTAAGTCTCTGAAAGCATTCTTCCGCCGTTGGGCCCCATTCAAACCTTCCTTTTTTTAACAGCTGAGTCAATGGAAAAGCCATCGACCCATAATTCGCCACAAAAAACGCATTTATAGTAACTGTGAGCCCAAGGAATCCCCGTAAGTCTTTAATGTTTTTAGGGCTTGGCCAACGTTCCATGGCCACAATTTTCTCCTGGATCGCGACCACTCCTCGCTGGATATAAAATGCCCCAAATACTCAATCTGCAAGCAAATCAAATCGACATTTCTTGGCATTTGCCACCAAGGCATGTGTCTGTAACACTTCAAACACGCTGACTAAATGCTCCTTATGCTCATCGATGGTCACACTGTAGATCAGGATGTCATCAAAAAATACTAGCACAAAACGGCGTAGGAACGGACGCAAAAGCTCATTCATAACTGATTGAAATGTCGCAGGCGCGTTGCGTAACCCGAAAGGCATGACTACAAACTCGTAGTGGCCCTCGTGAGTTCTAAATGTTGTTTTGTGAACATCAGCCGGCTTAACACGTATTTGATGGTACCCTGCCTTCAGATCAATTTTTGAAAATACCGTTGCCCCATGCAACTCATCTAATAATTCATCCACCAGGTGATGTATCGGATACTTACGATCGCATCGCATGCTGATTCAGTAGCGATAGTCGCACGAAGCGCCAACTCCCATCCTTCTTTTTAACCAACAGAACTGGACTTGAAAACGGGCTCGTGCTGGGACGGATAATACCCGCCAATAACATTTCGCCCACTAGTTTTTCAATCTCGTTCTTCTGGTACTGCGGGTACCGATACGGACGTACATTCACGGAATCCTTGCCTGGCAATAGCGCAATAGCATGGTCGCAATTACGCTGTGGAGGTAGACCTGTCAATGATTCAAAAACCGGTGAGTATAAACAAAGTACGTCGTGGAGTTCTGTGGGTACCTGAGACAAGTCAGGTAGGGTCCCGGACTGTTCACGTGGCGGTATCAGGGTTTCAATCATATTCAGCTCGACCAGAAGCCCCTGCTCCTCGGGACGTAAGGATTTCATCATAGATTTCAATGAAACACCGGCCTTGACCACCGTGGCTCGCCACGCACCGACCGCCTTGACCCTAGCTTGAATTTCATTTTAAGCGCTCGATAGTCAAATTCAATTTTTCCCAATGTGGCCAGCCACACAACGCCCAAAATCACATCCGCACTACCCAACGGTAAGGGCAAGAAATCATTTACTATTCTCATCTTGGTCAACTGAAGTTCCACATTCTTACAAATGCCCGCAGCTCTCCGTAATCCCCCGAGTCCCCCAACATAATGCCATAATCATCGATGGTTCTACTGCGGTAATTTCAATTTAGCAACCATGTCCTCGGATATGAAGTTATCGTAGCCCCACTATCGATTAATACTACTACTTCATGTCCCCGTGATCGAGCTCGTCACCTTTAGAGTTTTTGGAGAACTTAGTCCAAACATGGAGTGCAATGAAAGGGTCGCGCCATATTCGTGTATCCACCATTTCCTCAACAAAAGCCTCTTGAACGTACATTCTTGGGAATCATCATTTTCCTCATTTTCCCGTGTTTCTCTTTGCATCACGCATACAACAAGAATCTTGAGCTTGCGCCTTCCTTTTCTTACACTGCCCCCGATTTAACTTCTCATCGCACCTAAAACATAGCCCTTTGTCTTTACGAATGCGGATCTCACTATCTGTTAAACGTTTATACGGGATGGCGGGTGTGGGGATGTTCGACGGTGTTGATCGGCTAGAATAGACTGAGGCAGGTGTGATGGTTTTTTGGTTCGTACTCCCTGCTACTCTGGTACTCATAGTACCTGAACTCAGGCTTGGTCTAACTGTTGACGTCGTGCTAACTCCTTTGACTTGATTTCGAAAAGCCAAGTCATCTTCGATTACCTGTGCCATGAATTTCTTATCCTGGATTCCGACTGGTCTCAGTTTCCTCATTTCGCTTCGTATTTCTGCCTTTAGTCCACTCTCCCATTTCCCTTCCAAGGCACTCGCACTGATATCGCGCATACCCTTTGCATATTTCTCAAACAACCGGCGATATTCCTTGACTGTTCCCACTTGTTGCAGACTCATCAAGTTGGCATATTTATTGTCATTGATCGTTGGTTGGAAACGATGCAATAGCAATTCTCGAAACTCCTCCCACGAAGCAATCTGAGCTCGATCCTCTTCATCATCAGTAGCCATTCCAATGCCTCCTTCCATACACAAATGTGGTGCATCAACCCTTTCATGGCCCGTCAACCTATTTACCCGAAAATACCTTTCTACTTTCGGCAGAGCCACCCGTCCGGATCCTCATCGGTAAGACCCTTAAACACCGACATTTCCAATTTCGTAATCGTCTATCAGCGGTTGGTCCATCCCATCCGCCGCTCCCCGTCCCCCTCGGTCACCCTGTTCTTGCTGTCCCTCCAATCCTCCCGCTGTTCCAACCGCCATGCGCAATCGGCCTTTCATAGCCTATGCGCACCTTCCTCTCCTCCGAAAAACATTCCCCGCCTCTCGAACCAGCCATCTCCCTTCGCTCGAATTCAGAACTCATATAATTGTCCCCATTGGTCAAGCCACGAAAATTTTCTCCCGGTCCACCCCTTACCGACCGAACCGGCCGAATCCACCCGGCCCGACCCGACCGCCCGCCCGGCACTACGGTCGCCGCTCGCCCTGACCGCGCCTCTCTGCCGCTCACACCACCGCCGGGCCCGCGCCACTCAGCCCACTGCGCGCTGTGCCCGCGCCCCACTCTCCGTACTCCCGCCGCATCCCCGACCAACCCCGCTCACCCGCTTAGGGCTCGCGCCCACTCGCCCACAGCCCCGACCACCCCGCTCTCTCGCGCCGAACCGTCTGCGCCCTCACGCCCATTCCCGTTCGCTCGCGCTCGGTCCGCCCAGCCGCTCGGCGCACCCGTGACCGTTCCCCCCTTCGCGCCGCCCACGCCGCTCGCAGCTCGCCCTCCGTGCCGCAGCCGAGCCCGCGCGCGTCGCCTCTCGCGCCACACCCGCTCGCCGCGCCCCCGGCCTCGGTCGCCCGGCCACACCGCCCCGACCACGCCGCTCCGGCTCCTCGCCGCCGACGCCCGCGCACCGCTCTCCCCTTCCGGTTCTGCCGCAACCCCTTTCCCTTTATCCGCGATAGCTGGTTCGGGATTCGACGGTTCCGGTTTGCGTTCTAAAATCTTCTGTATGTTGAGATTCAACTGTCCAAATTCCTGATCCATCCGACTCCCCATAGCCGCCAACCAACCTCGAACTCTTGCTGTTTTTTTAGCATCTCGGTACTGCTTTCCTCACACTCTTGCATCCTCGGTCTCCATCTTAGTACTCACCATTCCCGGATCGGCAAATGGCTCTGATACCAAAATGATAGAATCTACTACTATTATTATTAAGAAACTATGATAATCTCTCGAGAGGATCTCTCAAAGAGCCAAATACAAAGACAACAACTGTTTGAATGAATTGCTAGAGGCCTAACATGACCTATTTATAGTAAACCTAGTATTTAACCTAATTTAGTAAATAATCCCCATTAAGGCCCAAAAGCCCAATACAACTTAAATAACAAAACATAATTATATTTAATAAAGCAATAAAAGAGATCCGTCACTTCTTGGTTCGCCTTGAGTAAACTTTCAATGACCCCGGGTTCGTATCAAAAACTTACTATTTTTCCAGTTTCTTTTTACCAAGCTTCTTCTAAAATTCAAGATTCAAGAAGCTATGACCCAGCACCAGCAGAATATGATAAGTGATAACTTTTGGGCTATACTATTGCACAAGGAATAGAGTGTTGAGGACAGAGATATGAGTGTTCTTTTTCGTCCACTTGTTTAACTGTCATCTGTCACCAAAGTCAGCTTGAATGTTCTCTCTCATTAATAAAAAGGTTTCATGGTCACATACCAAACCAAGGACATTTAGGAATAAGTTTCTATGCTTATCTGAGAATCATCTTCCTGCAAACCATACTAAGTATTACAGTATGTCGAAGCATATTCATTTTACTGGGGGAATCATCAAATCCGCATACAACGTCAACCTCATTCCTCTTTTTATACTACCAAATGTATGTTTATACTTTAACCATTAAAGATTCACTGCTCCATTTAACCAAGTGACAACCGCCTTCCGTATTCTGCTCAAAATAAGTTCCTAAAAAATTTGACAACATTGAACCGCCAATTATGAAGTAAACATTTCGAGACTGAAAGAGAATTAAAGGTTATGTTTGAAAGGATTGCTTGTGCTAAAGCAAGCATTACTCCTTGAGAAAAAATAAATAAATAAAAAAAGGTGTTTTATCCATGTGCAACTTGTAACCGAATTTTAATCACTAGCAAAGCAGAAATTTTGTCTTTGTACTTCAACAAGTACAAGACCAAGGGTCAATCTCACTCACTGCAAGAAAAAGACAACCACGGGTCCACTGAACTGGTGTAAATTTTGTTGGCCAACAAATGCAGTTGGGAAATCAAAGATCAAAGTGTAACTTCTGTAGTCTTTGAGAGAATATTTGTCCAACAATCTTAGAAGGTCTCGTAGTTAACTAACTGGCCACCTCTCATGAAATAAACACTCTCATTTTGGAAATGTGGTAAATGGAAAACTCATTAGTGGCTGTATTAATAATGTCATTTTGAAGGTATTGGAACATTTTTGTTAGGTCATTTTTATGATGTACAGCAGAAAGCGCCATTTAAATATTAAAAAATACATTATAGCTATGTGACCTTAAAAACTAAGACTTTTGGTTTTAGAAAAAAAAACTCCTTGGAGAACTATACAAGAATTTTTTTCCTTGATATTTGTGAGTATTTATGCCAACTTAGACATACTTGACTATTGATATACCATCTGATCCTACAACATTTGGATTTCAAGAAAATCCGTACGAAATTGGCTACCATGGATTGAACCTATAACCTTTTGGTTTCTTAAAGTCATCTGTGGTTTCATTACTCACTGCTTGAGCGAACATTTGGCATTAAAACACTTCATCCAGAAAGCAACCTTTTGAAGGGTTGTCCAAGCCAACCTACTTTTATGTAGTGCTTTTACAAGCTCAAGGCTATAAAAAACGGATTTTTTGTGAGACACACTTTAGATACGAACATCAAGGTACGTGGCTAGAGCATGTCTTTTGACATGCGCCTTGCACGTCGAAGGTAAGGCGCTAGACTTGCGCCTGGAGCTCAGGTACACCTTATAAAACACTACTCTTATCTAATATTCTAATTACAAAGCTCTAACAACTATTTCTTTGGGTTTTCCTTTATTCTTACTGATCCCAAAATGTTTAGTCAGGAATGAGTTCACTACTTACTTTTGAGAGGATTGTTGAGTGGGAGATATGTCCCTTTTGTGTATTGTTATTCTAGCTTTATCATTTGTTTGGTAAGAGGGTACATTAAATGGCCTCAAGTTTGTCTTCCTCTGATGTGCCTCACTCTTGTTGGGCTTTTTCCGCCCCCTTGCTGACCACGAATCTTTAGAGCTGGTTGACCTTCTTTTTCATCTTTGATCAGATGGTCCACTCGAGGTGAAGGGATTCTTGGGTTTGGGATTTTAATTCATCCAAGTGCTTTCTCTCTTGCCAGTCTTTCTTCCCTACTCTGTGCACTTCTTTCCCTATCAGGGGCCTCATTTTTCTCCTCTTTGGAATGTTAAAATCCCTTAGAGAAATGTTCTTCCTCGCAAGTTTTACATGGGAGAGTGAACATTGCAACATTCGCCTTTTGTGTTGCGACCACGGTAGGATGCTCTTCGCAAGTGGTAGGAGGATGATCTAGATCATCCTCTGCAGCCTACGTATTCACTTATTTCCTTTGGAGTCAATGTTTTAGTTTGTTACAGATTGTTGGACTGTAATAAAGGCTGTCGCTCTATGATTGAAGTGATCTTTATGAACTTTCCCTTTCATGCTATAGGCTGAGTGTTGTGGCAGACTTGTTATTTTTCTATTTTATGGAGAGTTTGATTCTAGAAGAATAGTAGAAATTTTAGAGGGATAGAGCTGGGTAGTTTTTCGATAGGATTTTTGTATTTTTCATACATCAAAGAATTTGTTATTTCCTATAATAAAAAGGATAGGAGAGATTTTTGGAGGAGGTGTGGAGGATGTAAGGTCCAACTCTTCTTTAAAGTGTCTCTTGCATGATGTACGACCTGATAACCAAAGGGTTATGAGTTCAAATCCCCACCCCAAATAATATTGAATTTAAAAAAATGTGTCAGTTAATTTAACCGATTAACTTCTGTAATTTTCATCATCTCATTTTTATTTACTAGAGTTCACATACCTATGTGTAGGTTTACTGGTTTGAGGCACTCTATTTAGCTTGTTTTTCGTATACCCTTGCACACTCTTTTCATTTTTTCAATCAAAATTCGTTTCTTGAAAAACAAAAACAAAGCTGTTTGTGATTCTGTTTTCATCACTGAATCCTGTCAATTTGAAATGTAAGTTCCAGAATATGACTTGTATCATCCATTTGGTTTGCAGATCCTAATATTATGAAGAAATTTCAAGTAGACAGAGGTGCAATAAAGTTTGTCCTTGCCGGTGCTAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTCTTGGATGATGAAGTCGAAGCGGACAGACCTGTGGTAAACTTTTTTTTGGAATCGATTGACTCAAAATCTCCATTGTTGATTCAGTTTGTGTTTCTTGGGTTATTTGTTGCATTTATCAGTAGTAGGTTTTAAGGTATTTTTTATGAATACATTGTAGATTCTTATTTAGAATCAAATATTCTCAGGCGATAATGGCAGAAGGGAAGCAACACGCTCTTGCTATTGGCTTCACTAAGCTGTCGGCAAAGGAAATGTGAGTAAAATTATCATGTAACTAAGATCCCAATTACTTTTGCTTTTGAAAATTAAGCTTTTAAGTTCTAACATTTATTTGCCTGTTTTCTTTGTTTAAGTTTTCAACTTTTAAATTGAGGGAATTATCAAAACTTGAATTTTCAATTATTTTCAAGAATATAAAGTGTTGATCACTTAACAAATCTTTGGTTGACATATGGGTTACCACGGATTTGGGAAATCAAAAGGTTATGGAATCTAGGTGGCTCATAGGACTTAATTTCTCACGAATTTCTTTAACAACCAAATGTGTTGTTTCGTGAGAATAGTCGAGGTGCGTACAAATTGACTTGGATTAAGCTTAAGAAAATTACTCTATGAATTTACAGAAGGTCGACAAACAAAGGGATTGGAGTGGACAATATGCATTACCTTAACGACGGTCTTTGGAAGGTACGTTACATAGTTCACTCCTGCTTTTCTTCGTGCTGAATGTGTCGATGCCTCAAAATGAAAAAGAAAACTTGTATAAATCGTCCCAGTGTAGACGTTGATGTCGAAGTAATATCTTATTACTTCTTATTTGATTGCAGATGGAACGACTCGATTGAGGATATTCGAAAGAAACATGGGAGCGGGGGCGATGCAACTTTGAGAAACACCTATGTTCAATTGCTTCATTCCCTGCACCTTTTGAGTTTCACTGTTATGTTGTGTGGACAGAGTCATAGACATCAACAAAAGTGGGAAACCAAGTTTAAAAAAGTGCATGTTTTATGTCTCAATATTTATGGAACTAATGTCACAATTGTAGTTAAAATCCCTTGGCAGTTTTTTGTGAATGTGCTATCTATGCACCTTTTGACATGATTGATTCTTAGCCATATTCATGGGTTTTTTTTTTCATTGTCAAGACTCAAGAGATCCTTACCATTGGGAAATGAGATTAAATATGTATTGTAAGAGTAATGCTTGGCCTATTAGAAACTAGCTCTAGTGATAATTTAGCAG

mRNA sequence

CTGAGGCTATGGCCCAAAAGGGAACAACAATCCAATGATACAAAACAAAAAGCCCAAAGTTCCGGCCCAAATTCTCCGACCGGCTTTAAACTCACGCAACCGCCGCCCGCCGGTCGGTTAATTGTTCTCTGTTCTCAGCTTCCGGCTCACACTCTTACGATCTCCTCACCGATACATTGTTTCGCATTTTACACAGATTCTGTTCAATTAACTTTTCGGCATCATGTTCAAAAAGTTCTCTACTGAAGAAGTGTCTGCTCAGAATCAAGTCAAGGCATCGGTGCAACGGAGAATTCGGCAAAGTATAGCGGAAGAATATCCAGGACTAGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGTCCCTCTGATTGTAACTAAGTGTCAGAACCATCTCAATCTGGTTGTTGTCAACAATGTGCCACTCTTTTTCAATATCCGCGATGGACCCTACATGCCTACCCTAAGGTTGCTTCATCAATATCCTAATATTATGAAGAAATTTCAAGTAGACAGAGGTGCAATAAAGTTTGTCCTTGCCGGTGCTAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTCTTGGATGATGAAGTCGAAGCGGACAGACCTGTGGCGATAATGGCAGAAGGGAAGCAACACGCTCTTGCTATTGGCTTCACTAAGCTGTCGGCAAAGGAAATAAGGTCGACAAACAAAGGGATTGGAGTGGACAATATGCATTACCTTAACGACGGTCTTTGGAAGATGGAACGACTCGATTGAGGATATTCGAAAGAAACATGGGAGCGGGGGCGATGCAACTTTGAGAAACACCTATGTTCAATTGCTTCATTCCCTGCACCTTTTGAGTTTCACTGTTATGTTGTGTGGACAGAGTCATAGACATCAACAAAAGTGGGAAACCAAGTTTAAAAAAGTGCATGTTTTATGTCTCAATATTTATGGAACTAATGTCACAATTGTAGTTAAAATCCCTTGGCAGTTTTTTGTGAATGTGCTATCTATGCACCTTTTGACATGATTGATTCTTAGCCATATTCATGGGTTTTTTTTTTCATTGTCAAGACTCAAGAGATCCTTACCATTGGGAAATGAGATTAAATATGTATTGTAAGAGTAATGCTTGGCCTATTAGAAACTAGCTCTAGTGATAATTTAGCAG

Coding sequence (CDS)

ATGTTCAAAAAGTTCTCTACTGAAGAAGTGTCTGCTCAGAATCAAGTCAAGGCATCGGTGCAACGGAGAATTCGGCAAAGTATAGCGGAAGAATATCCAGGACTAGAGCCAGTTTTGGATGATTTGCTTCCTAAAAAAGTCCCTCTGATTGTAACTAAGTGTCAGAACCATCTCAATCTGGTTGTTGTCAACAATGTGCCACTCTTTTTCAATATCCGCGATGGACCCTACATGCCTACCCTAAGGTTGCTTCATCAATATCCTAATATTATGAAGAAATTTCAAGTAGACAGAGGTGCAATAAAGTTTGTCCTTGCCGGTGCTAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTCTTGGATGATGAAGTCGAAGCGGACAGACCTGTGGCGATAATGGCAGAAGGGAAGCAACACGCTCTTGCTATTGGCTTCACTAAGCTGTCGGCAAAGGAAATAAGGTCGACAAACAAAGGGATTGGAGTGGACAATATGCATTACCTTAACGACGGTCTTTGGAAGATGGAACGACTCGATTGA

Protein sequence

MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNLVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGGVLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERLD

Homology

[Close]

BLAST of Sed0027178 vs. NCBI nr
Match: XP_022961538.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita moschata] >KAG6590453.1 Malignant T-cell-amplified sequence 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354.8 bits (909), Expect = 4.5e-94
Identity = 174/181 (96.13%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKK QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
            LDDEVEAD PVAIMAEGKQHALAIGFTK+SAKEIR+TNKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 ALDDEVEADTPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. NCBI nr
Match: XP_023515958.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.6 bits (906), Expect = 1.0e-93
Identity = 173/181 (95.58%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKK QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
            LDDEVEAD PVAIMAEGKQHALAIGFTK+SAK+IR+TNKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 ALDDEVEADTPVAIMAEGKQHALAIGFTKMSAKQIRATNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. NCBI nr
Match: XP_022135845.1 (malignant T-cell-amplified sequence 1 homolog [Momordica charantia])

HSP 1 Score: 353.6 bits (906), Expect = 1.0e-93
Identity = 173/181 (95.58%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKK QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
            LDDEVEAD PVAIMAEGKQHALAIGFTK+SAKEIR+TNKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 ALDDEVEADTPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. NCBI nr
Match: XP_011659846.1 (malignant T-cell-amplified sequence 1 homolog [Cucumis sativus] >KGN66049.1 hypothetical protein Csa_007097 [Cucumis sativus])

HSP 1 Score: 353.6 bits (906), Expect = 1.0e-93
Identity = 173/181 (95.58%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKK QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
           VLDDEVEA+ PVAIMAEGKQHALAIGFTK+SAKEIR+TNKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 VLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. NCBI nr
Match: XP_022968801.1 (malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima])

HSP 1 Score: 352.4 bits (903), Expect = 2.3e-93
Identity = 173/181 (95.58%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKK QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
            LDDEVEAD PVAIMAEGKQHALAIGFTK+SAKEIR+ NKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 ALDDEVEADTPVAIMAEGKQHALAIGFTKMSAKEIRAMNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. ExPASy Swiss-Prot
Match: Q86KL4 (Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium discoideum OX=44689 GN=mcts1 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.2e-54
Identity = 101/182 (55.49%), Postives = 133/182 (73.08%), Query Frame = 0


Query: 1   MFKKFSTEEVS-AQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLN 60
           MFKK S +  S   NQ+K+S+QR I+ SI  +YP L+ + +D+ PKKVP++  KCQNH+N
Sbjct: 1   MFKKLSLKGSSNTNNQIKSSLQRNIKNSILAQYPKLKDIEEDVFPKKVPIVQVKCQNHIN 60

Query: 61  LVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPG 120
           LV++NN  LFFN R+GPY PTLR LH+YPNI+   QVD+GAIKFVL GANIMC GLTSPG
Sbjct: 61  LVLINNEVLFFNEREGPYYPTLRFLHKYPNILPHVQVDKGAIKFVLQGANIMCRGLTSPG 120

Query: 121 GVLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMER 180
             ++ ++  D  VA+MAEGK HA AIG  K+S  +IR+ N  IG++N+HYL D L+    
Sbjct: 121 AKMEVDLPVDAIVAVMAEGKDHASAIGVMKMSTNDIRTINNDIGINNIHYLGDSLYMSPN 180

Query: 181 LD 182
           L+
Sbjct: 181 LE 182

[Close]

BLAST of Sed0027178 vs. ExPASy Swiss-Prot
Match: Q2KIE4 (Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 100/179 (55.87%), Postives = 131/179 (73.18%), Query Frame = 0


Query: 1   MFKKFSTEE-VSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLN 60
           MFKKF  +E VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ 
Sbjct: 1   MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE 60

Query: 61  LVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPG 120
           ++ VN   LFF  R+GP+ PTLRLLH+YP I+   QVD+GAIKFVL+GANIMCPGLTSPG
Sbjct: 61  ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120

Query: 121 GVLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKME 179
             L      D  VAIMAEGKQHAL +G  K+SA++I   NKGIG++N+HYLNDGLW M+
Sbjct: 121 AKL-YPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMK 178

[Close]

BLAST of Sed0027178 vs. ExPASy Swiss-Prot
Match: Q9ULC4 (Malignant T-cell-amplified sequence 1 OS=Homo sapiens OX=9606 GN=MCTS1 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 100/179 (55.87%), Postives = 131/179 (73.18%), Query Frame = 0


Query: 1   MFKKFSTEE-VSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLN 60
           MFKKF  +E VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ 
Sbjct: 1   MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE 60

Query: 61  LVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPG 120
           ++ VN   LFF  R+GP+ PTLRLLH+YP I+   QVD+GAIKFVL+GANIMCPGLTSPG
Sbjct: 61  ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120

Query: 121 GVLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKME 179
             L      D  VAIMAEGKQHAL +G  K+SA++I   NKGIG++N+HYLNDGLW M+
Sbjct: 121 AKL-YPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMK 178

[Close]

BLAST of Sed0027178 vs. ExPASy Swiss-Prot
Match: Q9DB27 (Malignant T-cell-amplified sequence 1 OS=Mus musculus OX=10090 GN=Mcts1 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 100/179 (55.87%), Postives = 131/179 (73.18%), Query Frame = 0


Query: 1   MFKKFSTEE-VSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLN 60
           MFKKF  +E VS   Q+K SV + I+  + E++PG+EP L+ ++PKK P+ + +C  H+ 
Sbjct: 1   MFKKFDEKENVSNCIQLKTSVIKGIKNQLLEQFPGIEPWLNQIMPKKDPVKIVRCHEHIE 60

Query: 61  LVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPG 120
           ++ VN   LFF  R+GP+ PTLRLLH+YP I+   QVD+GAIKFVL+GANIMCPGLTSPG
Sbjct: 61  ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120

Query: 121 GVLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKME 179
             L      D  VAIMAEGKQHAL +G  K+SA++I   NKGIG++N+HYLNDGLW M+
Sbjct: 121 AKL-YPAAVDTIVAIMAEGKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMK 178

[Close]

BLAST of Sed0027178 vs. ExPASy Swiss-Prot
Match: Q5PPY1 (Malignant T-cell-amplified sequence 1-A OS=Xenopus laevis OX=8355 GN=mcts1-a PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-50
Identity = 99/179 (55.31%), Postives = 130/179 (72.63%), Query Frame = 0


Query: 1   MFKKFSTEE-VSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLN 60
           MFKKF  +E VS   Q+K SV + I+  + +++PG+E  L+ ++PKK P+ + +C  H+ 
Sbjct: 1   MFKKFDEKENVSNCIQLKTSVIKGIKNQLIDQFPGIEQWLNQIMPKKDPVKIVRCHEHIE 60

Query: 61  LVVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPG 120
           ++ VN   LFF  R+GP+ PTLRLLH+YP I+   QVD+GAIKFVL+GANIMCPGLTSPG
Sbjct: 61  ILTVNGELLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPG 120

Query: 121 GVLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKME 179
             L     AD  VAIMAEGKQHAL +G  K+SA +I   NKGIG++N+HYLNDGLW M+
Sbjct: 121 AKL-YPAAADTVVAIMAEGKQHALCVGVMKMSADDIEKINKGIGIENIHYLNDGLWHMK 178

[Close]

BLAST of Sed0027178 vs. ExPASy TrEMBL
Match: A0A6J1HC33 (malignant T-cell-amplified sequence 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111462086 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.2e-94
Identity = 174/181 (96.13%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKK QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
            LDDEVEAD PVAIMAEGKQHALAIGFTK+SAKEIR+TNKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 ALDDEVEADTPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. ExPASy TrEMBL
Match: A0A0A0LYF6 (PUA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569260 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 4.9e-94
Identity = 173/181 (95.58%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKK QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
           VLDDEVEA+ PVAIMAEGKQHALAIGFTK+SAKEIR+TNKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 VLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. ExPASy TrEMBL
Match: A0A6J1C273 (malignant T-cell-amplified sequence 1 homolog OS=Momordica charantia OX=3673 GN=LOC111007697 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 4.9e-94
Identity = 173/181 (95.58%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKK QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
            LDDEVEAD PVAIMAEGKQHALAIGFTK+SAKEIR+TNKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 ALDDEVEADTPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. ExPASy TrEMBL
Match: A0A6J1HVW2 (malignant T-cell-amplified sequence 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467930 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 173/181 (95.58%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKK QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
            LDDEVEAD PVAIMAEGKQHALAIGFTK+SAKEIR+ NKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 ALDDEVEADTPVAIMAEGKQHALAIGFTKMSAKEIRAMNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. ExPASy TrEMBL
Match: A0A1S3BPJ3 (malignant T-cell-amplified sequence 1 homolog OS=Cucumis melo OX=3656 GN=LOC103492146 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 172/181 (95.03%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKFSTE+VSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDLLPKK PLIVTKCQNHLNL
Sbjct: 1   MFKKFSTEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVTKCQNHLNL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIM+K QVDRGAIKFVLAGANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMRKLQVDRGAIKFVLAGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
           VLDDEVEA+ PVAIMAEGKQHALAIGFTK+SAKEIR+TNKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 VLDDEVEAETPVAIMAEGKQHALAIGFTKMSAKEIRATNKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. TAIR 10
Match: AT1G09150.1 (pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein )

HSP 1 Score: 327.0 bits (837), Expect = 9.5e-90
Identity = 158/181 (87.29%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDLLPKKVPLIVTKCQNHLNL 60
           MFKKF  EE+S+QNQVKASVQRRIRQSI +EYPGLE V++DLLPKK+PLIV KC NHL L
Sbjct: 1   MFKKFCLEEISSQNQVKASVQRRIRQSIQDEYPGLESVMEDLLPKKIPLIVVKCPNHLTL 60

Query: 61  VVVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGG 120
           VVVNNVPLFF IRDGPYMPTLRLLHQYPNIMK+FQVDRGAIKFVL+GANIMCPGLTSPGG
Sbjct: 61  VVVNNVPLFFCIRDGPYMPTLRLLHQYPNIMKRFQVDRGAIKFVLSGANIMCPGLTSPGG 120

Query: 121 VLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTNKGIGVDNMHYLNDGLWKMERL 180
           VLD EVEA+RPVAI AEGKQHALAIGFTK+SAK+I+S NKGIGVDNMHYLNDGLWKMERL
Sbjct: 121 VLDQEVEAERPVAIYAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLWKMERL 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of Sed0027178 vs. TAIR 10
Match: AT1G71350.1 (eukaryotic translation initiation factor SUI1 family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 51/183 (27.87%), Postives = 94/183 (51.37%), Query Frame = 0


Query: 1   MFKKFSTEEVSAQNQVKASVQRRIRQSIAEEYPGL-EPVLDDLLPKKVPLIVTKCQNHLN 60
           MFKK    E  +  ++  + ++++R+++    P L + +LD +LP KV + ++K QN + 
Sbjct: 1   MFKK--AVEAKSHQRLSGADRKKLRRTVRNRLPLLTDELLDAILPPKVEITLSKFQNRVI 60

Query: 61  LV-VVNNVPLFFNI--RDGPYMPTLRLLHQYPNIMKKFQVDRGAI-KFVLAGANIMCPG- 120
           +  +    P+FF+I  R     PT+  L + P ++  F +  G + ++++ GA++M PG 
Sbjct: 61  VYSIEGGCPMFFDIDGRGTEIFPTVFALWEAPEMLPSFMLKGGEVSRYIIGGADLMFPGI 120

Query: 121 LTSPGGVLDDEVEADRPVAIMAEGKQHALAIGFTKLSAKEIRSTN-KGIGVDNMHYLNDG 177
           L  P G       A    A+   G    +A+G T +S++E R    +G  +   HY  D 
Sbjct: 121 LIPPQGY--PSFSAGEIWAVKVPGNLAPIAVGCTTMSSEEARKAGLRGKALRITHYYRDF 179

The following BLAST results are available for this feature:

BLAST of Sed0027178 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961538.1	4.5e-94	96.13	malignant T-cell-amplified sequence 1 homolog [Cucurbita moschata] >KAG6590453.1...	[more]
XP_023515958.1	1.0e-93	95.58	malignant T-cell-amplified sequence 1 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022135845.1	1.0e-93	95.58	malignant T-cell-amplified sequence 1 homolog [Momordica charantia]	[more]
XP_011659846.1	1.0e-93	95.58	malignant T-cell-amplified sequence 1 homolog [Cucumis sativus] >KGN66049.1 hypo...	[more]
XP_022968801.1	2.3e-93	95.58	malignant T-cell-amplified sequence 1 homolog [Cucurbita maxima]	[more]

BLAST of Sed0027178 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86KL4	6.2e-54	55.49	Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium discoideum OX=446...	[more]
Q2KIE4	1.7e-51	55.87	Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1	[more]
Q9ULC4	1.7e-51	55.87	Malignant T-cell-amplified sequence 1 OS=Homo sapiens OX=9606 GN=MCTS1 PE=1 SV=1	[more]
Q9DB27	1.7e-51	55.87	Malignant T-cell-amplified sequence 1 OS=Mus musculus OX=10090 GN=Mcts1 PE=1 SV=...	[more]
Q5PPY1	1.9e-50	55.31	Malignant T-cell-amplified sequence 1-A OS=Xenopus laevis OX=8355 GN=mcts1-a PE=...	[more]

BLAST of Sed0027178 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HC33	2.2e-94	96.13	malignant T-cell-amplified sequence 1 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0LYF6	4.9e-94	95.58	PUA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569260 PE=4 SV...	[more]
A0A6J1C273	4.9e-94	95.58	malignant T-cell-amplified sequence 1 homolog OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1HVW2	1.1e-93	95.58	malignant T-cell-amplified sequence 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S3BPJ3	1.1e-93	95.03	malignant T-cell-amplified sequence 1 homolog OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Sed0027178 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09150.1	9.5e-90	87.29	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing ...	[more]
AT1G71350.1	2.1e-12	27.87	eukaryotic translation initiation factor SUI1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 92..171 e-value: 8.8E-11 score: 51.8
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 93..170 e-value: 1.0E-17 score: 63.9
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 62..172 e-value: 1.3E-23 score: 81.3
IPR041366	Pre-PUA domain	PFAM	PF17832	Pre-PUA	coord: 7..88 e-value: 1.3E-26 score: 93.0
IPR016437	MCT-1/Tma20	PIRSF	PIRSF005067	Tma_RNA-bind	coord: 1..180 e-value: 1.1E-59 score: 199.6
IPR016437	MCT-1/Tma20	PANTHER	PTHR22798	MCT-1 PROTEIN	coord: 1..178
None	No IPR available	GENE3D	3.10.400.20		coord: 1..180 e-value: 1.9E-57 score: 195.9
None	No IPR available	PANTHER	PTHR22798:SF9	BNACNNG06600D PROTEIN	coord: 1..178
None	No IPR available	PROSITE	PS50890	PUA	coord: 91..171 score: 14.042696
None	No IPR available	CDD	cd11609	MCT1_N	coord: 3..79 e-value: 1.45061E-43 score: 137.666
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 91..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027178.1	Sed0027178.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001731	formation of translation preinitiation complex
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003723	RNA binding