Sed0027158 (gene) Chayote v1

Overview


Name	Sed0027158
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG10: 34054447 .. 34054917 (+)
RNA-Seq Expression	Sed0027158
Synteny	Sed0027158

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCACTTCAATTCATTTTCCATCTAATTACTTCTTCTCTGCCATGGGAGCCAACAACAGGCAAAAAAAGGCTCACTCTTCTTTCTCTATCTTCAACTTCTTCAAATCGAGGAAGGGAAGGAAAGGAGATGGTTATGATCACGGTGACTCTCGGGATGAAATGTCAAGCGCGAGTAAGGTGTGGCCGAGCGATGAAGATAGAGGCTATCATTGGGTTGCTGAGCCTGGTATTGATAGAAAGGCCAAAGATTATATTGACAGGATCTATAGAAACCGTGTCTTCGAAACCGAGCGCCAAACAATCACTCTTCATCCTAATGAATCTAAATCTGATGTGTAAATCATTTATTTGTGTATATCTTTATTTATTATTGTGATTTCATAATTAGAATGGGTTGTTTCAAGTGTTGGATCGTATAGTAATGTTATATCAAGCTTAACATATCTTCATATCTATTAATTTTCTTAGTC

mRNA sequence

TCCCACTTCAATTCATTTTCCATCTAATTACTTCTTCTCTGCCATGGGAGCCAACAACAGGCAAAAAAAGGCTCACTCTTCTTTCTCTATCTTCAACTTCTTCAAATCGAGGAAGGGAAGGAAAGGAGATGGTTATGATCACGGTGACTCTCGGGATGAAATGTCAAGCGCGAGTAAGGTGTGGCCGAGCGATGAAGATAGAGGCTATCATTGGGTTGCTGAGCCTGGTATTGATAGAAAGGCCAAAGATTATATTGACAGGATCTATAGAAACCGTGTCTTCGAAACCGAGCGCCAAACAATCACTCTTCATCCTAATGAATCTAAATCTGATGTGTAAATCATTTATTTGTGTATATCTTTATTTATTATTGTGATTTCATAATTAGAATGGGTTGTTTCAAGTGTTGGATCGTATAGTAATGTTATATCAAGCTTAACATATCTTCATATCTATTAATTTTCTTAGTC

Coding sequence (CDS)

ATGGGAGCCAACAACAGGCAAAAAAAGGCTCACTCTTCTTTCTCTATCTTCAACTTCTTCAAATCGAGGAAGGGAAGGAAAGGAGATGGTTATGATCACGGTGACTCTCGGGATGAAATGTCAAGCGCGAGTAAGGTGTGGCCGAGCGATGAAGATAGAGGCTATCATTGGGTTGCTGAGCCTGGTATTGATAGAAAGGCCAAAGATTATATTGACAGGATCTATAGAAACCGTGTCTTCGAAACCGAGCGCCAAACAATCACTCTTCATCCTAATGAATCTAAATCTGATGTGTAA

Protein sequence

MGANNRQKKAHSSFSIFNFFKSRKGRKGDGYDHGDSRDEMSSASKVWPSDEDRGYHWVAEPGIDRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV

Homology

[Close]

BLAST of Sed0027158 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_005148 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 4.4e-35
Identity = 72/98 (73.47%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFNFFKSRKGRKGDGYDHGDSRDEMSSASKVWPSDEDRGYHWVAE 60
          MG ++RQKK HSSFSIF+FFKS++GRKGD Y+HG + +++ S+SKVWPSDED+GY WVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          PGIDRKAKDYIDRIY+NRVFETERQT+T+HPN   S+V
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Sed0027158 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.7e-34
Identity = 75/99 (75.76%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFNFFKSRKGRKGDGYDH-GDSRDEMSSASKVWPSDEDRGYHWVA 60
          MG NNRQKK+HSSFSIF+FFKSR+GRKGD  +H G   DEM  + KVWPSDED+ +HWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          EPGIDRKAKDYIDRIYRNRVFE+ERQTIT+ PN +KS+V
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Sed0027158 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 74/99 (74.75%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFNFFKSRKGRKGDGYDH-GDSRDEMSSASKVWPSDEDRGYHWVA 60
          MG NNRQKKAH+SFSIF+FFKSR+GRKGD  +H G   DEM  + KVWPSDED+ +HWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          EPGIDRKAKDYIDRIYRNRVFE+ERQT+T+ PN  KS+V
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Sed0027158 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 3.2e-33
Identity = 71/95 (74.74%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 5  NRQKKAHSSFSIFNFFKSRKGRKGDGYDHGDS-RDEMSSASKVWPSDEDRGYHWVAEPGI 64
          NRQKK+HSSFSIF+FFKS++GRKGD YDHG +  DEM  ++KVWPSDED+ +HW+AEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          DRKAKDYIDRIYRNRVFE+ERQT+T+ PN +KS+V
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Sed0027158 vs. NCBI nr
Match: KAG6592313.1 (hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFNFFKSRKGRKGDGYDHGDSRDEMSSASKVWPSDEDRGYHWVAE 60
          MG NNR KK+HSSFSIFNFFK RKGRK D YDHG   +EM  + KVWPSDED+ + WVAE
Sbjct: 1  MGGNNRSKKSHSSFSIFNFFKFRKGRKEDHYDHGGYWNEMPRSGKVWPSDEDKTHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          PGIDRKAKDYID+IYRNR+FE+ERQT+TL  N +K D+
Sbjct: 61 PGIDRKAKDYIDKIYRNRIFESERQTVTLPANGTKLDL 98

[Close]

BLAST of Sed0027158 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.1e-35
Identity = 72/98 (73.47%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFNFFKSRKGRKGDGYDHGDSRDEMSSASKVWPSDEDRGYHWVAE 60
          MG ++RQKK HSSFSIF+FFKS++GRKGD Y+HG + +++ S+SKVWPSDED+GY WVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          PGIDRKAKDYIDRIY+NRVFETERQT+T+HPN   S+V
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Sed0027158 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 75/99 (75.76%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFNFFKSRKGRKGDGYDH-GDSRDEMSSASKVWPSDEDRGYHWVA 60
          MG NNRQKK+HSSFSIF+FFKSR+GRKGD  +H G   DEM  + KVWPSDED+ +HWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          EPGIDRKAKDYIDRIYRNRVFE+ERQTIT+ PN +KS+V
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Sed0027158 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.3e-34
Identity = 73/95 (76.84%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 5  NRQKKAHSSFSIFNFFKSRKGRKGDGYDHGDS-RDEMSSASKVWPSDEDRGYHWVAEPGI 64
          NRQKK+HSSFSIF+FFKSR+GRKGD YDHG +  DEM  ++KVWPSDED+ +HWVAEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          DRKAKDYIDRIYRNRVFE+ERQT+T+ PN +KS+V
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Sed0027158 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.0e-34
Identity = 74/99 (74.75%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFNFFKSRKGRKGDGYDH-GDSRDEMSSASKVWPSDEDRGYHWVA 60
          MG NNRQKKAH+SFSIF+FFKSR+GRKGD  +H G   DEM  + KVWPSDED+ +HWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          EPGIDRKAKDYIDRIYRNRVFE+ERQT+T+ PN  KS+V
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Sed0027158 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 71/95 (74.74%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 5  NRQKKAHSSFSIFNFFKSRKGRKGDGYDHGDS-RDEMSSASKVWPSDEDRGYHWVAEPGI 64
          NRQKK+HSSFSIF+FFKS++GRKGD YDHG +  DEM  ++KVWPSDED+ +HW+AEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVFETERQTITLHPNESKSDV 99
          DRKAKDYIDRIYRNRVFE+ERQT+T+ PN +KS+V
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Sed0027158 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-12
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 1  MGANNRQKKAHSS--FSIFNFFKSRKGRKGDGYDHGDSRDEMSSASKVWPSDEDRGYHWV 60
          MG  NR   +HSS  FS+F+FFK+R+  +    +   S D+     K   SDED+ Y WV
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHR---VEADGSWDDFGYTRKAMASDEDKRY-WV 60

Query: 61 AEPGIDRKAKDYIDRIYRNRVFETERQTITLHPNE 94
          AEPGIDRKA  +I + +  RV E+ERQT++ + +E
Sbjct: 61 AEPGIDRKASAFIAKFHATRVSESERQTLSPYRSE 88

[Close]

BLAST of Sed0027158 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 7.6e-09
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 36 SRDEMSSASKVWPSDEDRGYHWVAEPGIDRKAKDYIDRIYRNRVFETERQTITLHPNESK 95
          S D++    K W SDED+ Y WVAEPGIDRKA  +I + + +RV E+ERQ  TL P +S 
Sbjct: 16 SWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQ--TLPPCQSH 74

Query: 96 SD 98
           D
Sbjct: 76 HD 74

The following BLAST results are available for this feature:

BLAST of Sed0027158 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45873.1	4.4e-35	73.47	hypothetical protein Csa_005148 [Cucumis sativus]	[more]
KAA0035003.1	3.7e-34	75.76	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45869.1	1.9e-33	74.75	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KGN45870.1	3.2e-33	74.74	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6592313.1	1.0e-31	71.43	hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0027158 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027158 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8W0	2.1e-35	73.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]
A0A5A7SWT9	1.8e-34	75.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KBW1	5.3e-34	76.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0KAK6	9.0e-34	74.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K7Y2	1.5e-33	74.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]

BLAST of Sed0027158 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	9.5e-12	44.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	7.6e-09	51.61	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..49
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027158.1	Sed0027158.1	mRNA