Sed0027145 (gene) Chayote v1

Overview


Name	Sed0027145
Type	gene
Organism	Sechium edule (Chayote v1)
Description	TF-B3 domain-containing protein
Location	LG08: 6276959 .. 6277552 (-)
RNA-Seq Expression	Sed0027145
Synteny	Sed0027145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAACATAAGACCATTCTACCATGATGAAGAAGAAGACCCCCAAGTCTACAATGCAGCCATGATTCTTTATAGCCTGAGGATGAGTAGACATGAGCTGCTCAATCTGGCCGATCGTTTCGTTGAAGTCGAGCTACTCAACCACAACGCACTACCACCACCCGTTGACGATGATCCTCCAGCGGAGGATGAAGGAGACAGAGCAAGGGAGGGGGTGCCAGCAATTGCAAACATGATCGGAGCGTGCAGTCCACCGTTCGACAAGACGTTGACGAAAAGCGACGTATCGTATGGGCTAGGGAGGCTAGCATTGTTCAAGGAATTTGTGACCTTGCATTTTGCTCCGATGTTCAACGCCGACGAGGATTTGGTTGAGGGAATCGGCGTGACTGTTTTTGATGCTCAAGGGAGGCAATACAACATGACGTTTAAGCTTTGGACTTCCAAGCTCTACGTTCTCACCAGCGGATGGACTGTGTTTTATGAAGCTAATAATTTGACTGAGCCTGGCTTGAATATCACTCTATGGATGTTTCGACATGTCGTTACTCATAGGCTTTGCTTTGCTATCATTCAGAGAATGGATGATTAG

mRNA sequence

ATGGTTAACATAAGACCATTCTACCATGATGAAGAAGAAGACCCCCAAGTCTACAATGCAGCCATGATTCTTTATAGCCTGAGGATGAGTAGACATGAGCTGCTCAATCTGGCCGATCGTTTCGTTGAAGTCGAGCTACTCAACCACAACGCACTACCACCACCCGTTGACGATGATCCTCCAGCGGAGGATGAAGGAGACAGAGCAAGGGAGGGGGTGCCAGCAATTGCAAACATGATCGGAGCGTGCAGTCCACCGTTCGACAAGACGTTGACGAAAAGCGACGTATCGTATGGGCTAGGGAGGCTAGCATTGTTCAAGGAATTTGTGACCTTGCATTTTGCTCCGATGTTCAACGCCGACGAGGATTTGGTTGAGGGAATCGGCGTGACTGTTTTTGATGCTCAAGGGAGGCAATACAACATGACGTTTAAGCTTTGGACTTCCAAGCTCTACGTTCTCACCAGCGGATGGACTGTGTTTTATGAAGCTAATAATTTGACTGAGCCTGGCTTGAATATCACTCTATGGATGTTTCGACATGTCGTTACTCATAGGCTTTGCTTTGCTATCATTCAGAGAATGGATGATTAG

Coding sequence (CDS)

ATGGTTAACATAAGACCATTCTACCATGATGAAGAAGAAGACCCCCAAGTCTACAATGCAGCCATGATTCTTTATAGCCTGAGGATGAGTAGACATGAGCTGCTCAATCTGGCCGATCGTTTCGTTGAAGTCGAGCTACTCAACCACAACGCACTACCACCACCCGTTGACGATGATCCTCCAGCGGAGGATGAAGGAGACAGAGCAAGGGAGGGGGTGCCAGCAATTGCAAACATGATCGGAGCGTGCAGTCCACCGTTCGACAAGACGTTGACGAAAAGCGACGTATCGTATGGGCTAGGGAGGCTAGCATTGTTCAAGGAATTTGTGACCTTGCATTTTGCTCCGATGTTCAACGCCGACGAGGATTTGGTTGAGGGAATCGGCGTGACTGTTTTTGATGCTCAAGGGAGGCAATACAACATGACGTTTAAGCTTTGGACTTCCAAGCTCTACGTTCTCACCAGCGGATGGACTGTGTTTTATGAAGCTAATAATTTGACTGAGCCTGGCTTGAATATCACTCTATGGATGTTTCGACATGTCGTTACTCATAGGCTTTGCTTTGCTATCATTCAGAGAATGGATGATTAG

Protein sequence

MVNIRPFYHDEEEDPQVYNAAMILYSLRMSRHELLNLADRFVEVELLNHNALPPPVDDDPPAEDEGDRAREGVPAIANMIGACSPPFDKTLTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMTFKLWTSKLYVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAIIQRMDD

Homology

[Close]

BLAST of Sed0027145 vs. NCBI nr
Match: KAG7023605.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-40
Identity = 83/122 (68.03%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 73  VPAIA---NMIGACSPPFDKTLTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIG 132
           +PA+A   N+IGA SPP++K LTKSDVS G GRL + KEFVT H  PMFNADED  EGI 
Sbjct: 32  IPALAVIMNIIGARSPPWEKRLTKSDVSEGQGRLIVRKEFVTNHLLPMFNADEDPSEGID 91

Query: 133 VTVFDAQGRQYNMTFKLWTSKLYVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCF 192
           VTV++ +GRQY+M FKLW SKLYVLT GW  FY+ NNLTEPGL +TLWMFRHV TH++CF
Sbjct: 92  VTVYNGEGRQYDMQFKLWASKLYVLTKGWNDFYKTNNLTEPGLYVTLWMFRHVETHKICF 151

[Close]

BLAST of Sed0027145 vs. NCBI nr
Match: KAG6589940.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-40
Identity = 82/122 (67.21%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 73  VPAIA---NMIGACSPPFDKTLTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIG 132
           +PA+A   N+IGA SPP++K LTKSDVS G GRL + KEFVT H  PMFNADED  EGI 
Sbjct: 83  IPALAVIMNIIGARSPPWEKRLTKSDVSEGQGRLIVRKEFVTNHLLPMFNADEDPSEGID 142

Query: 133 VTVFDAQGRQYNMTFKLWTSKLYVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCF 192
           VTV++ +GRQY+M FKLW SKLYVLT GW  FY+ NNLT+PGL +TLWMFRHV TH++CF
Sbjct: 143 VTVYNGEGRQYDMQFKLWASKLYVLTKGWNDFYKTNNLTDPGLYVTLWMFRHVETHKICF 202

[Close]

BLAST of Sed0027145 vs. NCBI nr
Match: KGN56101.1 (hypothetical protein Csa_010492 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 5.9e-39
Identity = 98/222 (44.14%), Postives = 130/222 (58.56%), Query Frame = 0


Query: 1   MVNIRPFYHDEEEDPQVYNAAMILYSLRMSR--HELLNLADRF------VEVELLNH--- 60
           MV++   Y+++     VY A++ILY + +S+         DRF          L+N    
Sbjct: 1   MVDVHYTYNNKIVAEDVYKASLILYDMALSKSVEPFEEPIDRFNNQLSSTSTSLVNEQSP 60

Query: 61  --NALPPPVDDDPPAEDEGDRAREGVPA----------------IANMIGACSPPFDKTL 120
             N   P V++  P  D+ +   E V A                I N+IG CSPPF K L
Sbjct: 61  VVNEHAPVVNEVLPNNDDDNGNNENVAAAVVVGRDQGRFPPMAVIQNIIGECSPPFVKQL 120

Query: 121 TKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMTFKLWTSKL 180
           TK+DV+   GRLAL KEFV L+  PMFN DEDL +GI V V+D +GR+Y+M FKLW SKL
Sbjct: 121 TKTDVTDNQGRLALHKEFVNLNLDPMFNDDEDLEDGISVIVYDIEGREYDMIFKLWASKL 180

Query: 181 YVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAIIQ 194
           YVLT  W  FY+ N+LT+PG  I++WMFRHVVT +LCFAI++
Sbjct: 181 YVLTKSWKEFYKTNDLTQPGEFISVWMFRHVVTQKLCFAIMR 222

[Close]

BLAST of Sed0027145 vs. NCBI nr
Match: KAA0043114.1 (putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYJ96217.1 putative B3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-37
Identity = 95/222 (42.79%), Postives = 125/222 (56.31%), Query Frame = 0


Query: 1   MVNIRPFYHDEEEDPQVYNAAMILYSLRMSRH--ELLNLADRFVEVELLNHNALPPPVDD 60
           MV +   Y+++    +VY A + L  ++ S    E  N       + +++    PP V++
Sbjct: 1   MVKVGYIYNNKIVKKEVYEACLALCEMKKSSEPFEEPNQFPSSTSISMVDDQ--PPVVNE 60

Query: 61  DPPAEDE------------------------GDRAREGVPAIA---NMIGACSPPFDKTL 120
            PP  +E                         DR    +P +A   N+IG CSPPF K L
Sbjct: 61  QPPIVNEHAPVVNEALLNNNNNNNENVAAVVADRDLGRLPPMAVIQNIIGECSPPFVKQL 120

Query: 121 TKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMTFKLWTSKL 180
           TK+DV+   GRLAL KEFV  +  PMFN DE L  GI VTV+D++GR+Y+MTF+LWTSKL
Sbjct: 121 TKTDVTDSQGRLALHKEFVNRNLVPMFNGDEILTNGISVTVYDSEGREYDMTFRLWTSKL 180

Query: 181 YVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAIIQ 194
           YVLT  W  FY  N LT P   ITLWMFRHVV H+LCFAI++
Sbjct: 181 YVLTKSWKKFYHDNGLTRPDEFITLWMFRHVVNHKLCFAIMR 220

[Close]

BLAST of Sed0027145 vs. NCBI nr
Match: XP_031736688.1 (uncharacterized protein LOC116402065 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-36
Identity = 94/219 (42.92%), Postives = 128/219 (58.45%), Query Frame = 0


Query: 1   MVNIRPFYHDEEEDPQVYNAAMILYSLRMSR------HELLNLADRF---VEVELLNHNA 60
           MV +R  Y+++  +  VY A++ L  ++ SR        +  L +RF     + +LN   
Sbjct: 1   MVKVRYTYNNKIVEKHVYEASLALCHMKNSRCLKPFEKPVTRLNNRFSSSTSISILNKQ- 60

Query: 61  LPPPVDDDPPAEDEG--DRAREGV---------------PAIANMIGACSPPFDKTLTKS 120
            PP + +  P  +E   +   E V                 I N+IG CSPPF K L K+
Sbjct: 61  -PPILIERAPIVNEALPNNNNENVAVAVAGRDWGRVPPMAVIQNIIGECSPPFVKQLMKT 120

Query: 121 DVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMTFKLWTSKLYVL 180
           DV+   GRLAL KEFVT +  PMFN  E+L  GI VTV+D++GR+Y+M FK WTSKLYVL
Sbjct: 121 DVTESQGRLALHKEFVTRNLIPMFNRGENLKNGISVTVYDSEGREYDMIFKFWTSKLYVL 180

Query: 181 TSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAIIQ 194
           T  W  FY++NNLT PG  I++WMFRHVV  +LCFAI++
Sbjct: 181 TKSWNKFYKSNNLTRPGEFISVWMFRHVVNRKLCFAIMR 217

[Close]

BLAST of Sed0027145 vs. ExPASy Swiss-Prot
Match: Q9ZR14 (Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana OX=3702 GN=At4g03170 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-14
Identity = 46/109 (42.20%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 84  SPPFDKTLTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMT 143
           S P  K L  SDV      L L KE V     P     E+ V+GI V+V+   G+   M 
Sbjct: 133 SRPIKKQLMSSDVDKDQCMLMLSKEQVKEKMLPFLEDSENPVKGIDVSVYGPDGKVQQME 192

Query: 144 FKLWT-SKLYVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAI 192
           FK+W   K  VLTSGW  F E   L+     +T+WMFRH+ T +LCFAI
Sbjct: 193 FKMWNGDKTPVLTSGWKQFVEDYGLSMTCDFVTVWMFRHIKTRKLCFAI 241

[Close]

BLAST of Sed0027145 vs. ExPASy Swiss-Prot
Match: Q9ZR15 (Putative B3 domain-containing protein At4g03160 OS=Arabidopsis thaliana OX=3702 GN=At4g03160 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.9e-10
Identity = 36/101 (35.64%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 91  LTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMTFKLWTSK 150
           L  SDV     RL L KE V      +   ++   +G+ V+V+   G  + M  K+W   
Sbjct: 69  LMDSDVKDNQYRLMLGKEPVKKMMDALGKTEKLGTKGLNVSVYGPNGENHKMVLKIWIKG 128

Query: 151 LYVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAI 192
             VLTSGW  F ++  L +    +T+WMFRH  T  +CFAI
Sbjct: 129 TPVLTSGWKNFVKSYKLEKHVDFLTIWMFRHKKTREICFAI 169

[Close]

BLAST of Sed0027145 vs. ExPASy Swiss-Prot
Match: Q9LM90 (B3 domain-containing protein At1g20600 OS=Arabidopsis thaliana OX=3702 GN=At1g20600 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-07
Identity = 33/79 (41.77%), Postives = 38/79 (48.10%), Query Frame = 0


Query: 84  SPPFDKTLTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMT 143
           S P  K L  SDV     RL L KE V     P     ED V+G+ V+V+   G    M 
Sbjct: 122 SRPIKKQLMSSDVDTDQSRLMLSKEQVKEKMLPFLEESEDPVKGVDVSVYGPDGEVQQMK 181

Query: 144 FKLWT-SKLYVLTSGWTVF 162
           FK+W   K  VLTSGW  F
Sbjct: 182 FKMWNGDKTPVLTSGWMQF 200

[Close]

BLAST of Sed0027145 vs. ExPASy TrEMBL
Match: A0A0A0L7L0 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073910 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.9e-39
Identity = 98/222 (44.14%), Postives = 130/222 (58.56%), Query Frame = 0


Query: 1   MVNIRPFYHDEEEDPQVYNAAMILYSLRMSR--HELLNLADRF------VEVELLNH--- 60
           MV++   Y+++     VY A++ILY + +S+         DRF          L+N    
Sbjct: 1   MVDVHYTYNNKIVAEDVYKASLILYDMALSKSVEPFEEPIDRFNNQLSSTSTSLVNEQSP 60

Query: 61  --NALPPPVDDDPPAEDEGDRAREGVPA----------------IANMIGACSPPFDKTL 120
             N   P V++  P  D+ +   E V A                I N+IG CSPPF K L
Sbjct: 61  VVNEHAPVVNEVLPNNDDDNGNNENVAAAVVVGRDQGRFPPMAVIQNIIGECSPPFVKQL 120

Query: 121 TKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMTFKLWTSKL 180
           TK+DV+   GRLAL KEFV L+  PMFN DEDL +GI V V+D +GR+Y+M FKLW SKL
Sbjct: 121 TKTDVTDNQGRLALHKEFVNLNLDPMFNDDEDLEDGISVIVYDIEGREYDMIFKLWASKL 180

Query: 181 YVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAIIQ 194
           YVLT  W  FY+ N+LT+PG  I++WMFRHVVT +LCFAI++
Sbjct: 181 YVLTKSWKEFYKTNDLTQPGEFISVWMFRHVVTQKLCFAIMR 222

[Close]

BLAST of Sed0027145 vs. ExPASy TrEMBL
Match: A0A5D3BAS8 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00040 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 95/222 (42.79%), Postives = 125/222 (56.31%), Query Frame = 0


Query: 1   MVNIRPFYHDEEEDPQVYNAAMILYSLRMSRH--ELLNLADRFVEVELLNHNALPPPVDD 60
           MV +   Y+++    +VY A + L  ++ S    E  N       + +++    PP V++
Sbjct: 1   MVKVGYIYNNKIVKKEVYEACLALCEMKKSSEPFEEPNQFPSSTSISMVDDQ--PPVVNE 60

Query: 61  DPPAEDE------------------------GDRAREGVPAIA---NMIGACSPPFDKTL 120
            PP  +E                         DR    +P +A   N+IG CSPPF K L
Sbjct: 61  QPPIVNEHAPVVNEALLNNNNNNNENVAAVVADRDLGRLPPMAVIQNIIGECSPPFVKQL 120

Query: 121 TKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMTFKLWTSKL 180
           TK+DV+   GRLAL KEFV  +  PMFN DE L  GI VTV+D++GR+Y+MTF+LWTSKL
Sbjct: 121 TKTDVTDSQGRLALHKEFVNRNLVPMFNGDEILTNGISVTVYDSEGREYDMTFRLWTSKL 180

Query: 181 YVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAIIQ 194
           YVLT  W  FY  N LT P   ITLWMFRHVV H+LCFAI++
Sbjct: 181 YVLTKSWKKFYHDNGLTRPDEFITLWMFRHVVNHKLCFAIMR 220

[Close]

BLAST of Sed0027145 vs. ExPASy TrEMBL
Match: A0A0A0LC65 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G609250 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 73/118 (61.86%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 76  IANMIGACSPPFDKTLTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDA 135
           I N+IG CSPPF K L K+DV+   GRLAL KEFVT +  PMFN  E+L  GI VTV+D+
Sbjct: 4   IQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFNRGENLKNGISVTVYDS 63

Query: 136 QGRQYNMTFKLWTSKLYVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAIIQ 194
           +GR+Y+M FK WTSKLYVLT  W  FY++NNLT PG  I++WMFRHVV  +LCFAI++
Sbjct: 64  EGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLTRPGEFISVWMFRHVVNRKLCFAIMR 121

[Close]

BLAST of Sed0027145 vs. ExPASy TrEMBL
Match: A0A6J1CTE7 (putative B3 domain-containing protein At4g03170 OS=Momordica charantia OX=3673 GN=LOC111014582 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 79/151 (52.32%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 47  LNHNALPPPVDDDPPAEDEGDRAREGVPAIANMIGACSPPFDKTLTKSDVSYGLGRLALF 106
           +N  A P P +++   E+   R    VPAI ++IG CS  ++K LT SDV+   GRLA+ 
Sbjct: 87  VNQEAPPDPPNNNNDGEER--RGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEAQGRLAIG 146

Query: 107 KEFVTLHFAPMFN---ADEDLVEGIGVTVFDAQGRQYNMTFKLWTSKLYVLTSGWTVFYE 166
           KEFVT + APMFN    +E+L EGI VTV++ +GR++ MTFK+W SKLYVL  GW  F +
Sbjct: 147 KEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCK 206

Query: 167 ANNLT--EPGLNITLWMFRHVVTHRLCFAII 193
           ANNLT    G  +TLWMFRH  TH LCFAII
Sbjct: 207 ANNLTHAHAGEFLTLWMFRHRRTHGLCFAII 235

[Close]

BLAST of Sed0027145 vs. ExPASy TrEMBL
Match: A0A2P6RSD2 (Putative transcription factor B3-Domain family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0120751 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-23
Identity = 56/119 (47.06%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 73  VPAIANMIGACSPPFDKTLTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTV 132
           VP++  +I  CS PF+K LT SDV     RLA+ KE V  H  P+ N  EDL EGI VT 
Sbjct: 128 VPSLHKLIEICSEPFEKQLTCSDVRDDQSRLAMSKEDVQKHLMPLLNESEDLNEGIDVTT 187

Query: 133 FDAQGRQYNMTFKLWTSKLYVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAI 192
           +D  G++Y M FK W SK++VLT GW  F   + L +    +T+WMFR++ T  LCF I
Sbjct: 188 YDLAGKEYPMKFKTWVSKIHVLTGGWKAFCRDHQLVQTQHFVTVWMFRNIATGNLCFVI 246

[Close]

BLAST of Sed0027145 vs. TAIR 10
Match: AT4G03170.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-15
Identity = 46/109 (42.20%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 84  SPPFDKTLTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMT 143
           S P  K L  SDV      L L KE V     P     E+ V+GI V+V+   G+   M 
Sbjct: 133 SRPIKKQLMSSDVDKDQCMLMLSKEQVKEKMLPFLEDSENPVKGIDVSVYGPDGKVQQME 192

Query: 144 FKLWT-SKLYVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAI 192
           FK+W   K  VLTSGW  F E   L+     +T+WMFRH+ T +LCFAI
Sbjct: 193 FKMWNGDKTPVLTSGWKQFVEDYGLSMTCDFVTVWMFRHIKTRKLCFAI 241

[Close]

BLAST of Sed0027145 vs. TAIR 10
Match: AT4G03160.1 (BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1); Has 46 Blast hits to 46 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 5.6e-11
Identity = 36/101 (35.64%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 91  LTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMTFKLWTSK 150
           L  SDV     RL L KE V      +   ++   +G+ V+V+   G  + M  K+W   
Sbjct: 69  LMDSDVKDNQYRLMLGKEPVKKMMDALGKTEKLGTKGLNVSVYGPNGENHKMVLKIWIKG 128

Query: 151 LYVLTSGWTVFYEANNLTEPGLNITLWMFRHVVTHRLCFAI 192
             VLTSGW  F ++  L +    +T+WMFRH  T  +CFAI
Sbjct: 129 TPVLTSGWKNFVKSYKLEKHVDFLTIWMFRHKKTREICFAI 169

[Close]

BLAST of Sed0027145 vs. TAIR 10
Match: AT1G20600.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-08
Identity = 33/79 (41.77%), Postives = 38/79 (48.10%), Query Frame = 0


Query: 84  SPPFDKTLTKSDVSYGLGRLALFKEFVTLHFAPMFNADEDLVEGIGVTVFDAQGRQYNMT 143
           S P  K L  SDV     RL L KE V     P     ED V+G+ V+V+   G    M 
Sbjct: 122 SRPIKKQLMSSDVDTDQSRLMLSKEQVKEKMLPFLEESEDPVKGVDVSVYGPDGEVQQMK 181

Query: 144 FKLWT-SKLYVLTSGWTVF 162
           FK+W   K  VLTSGW  F
Sbjct: 182 FKMWNGDKTPVLTSGWMQF 200

The following BLAST results are available for this feature:

BLAST of Sed0027145 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023605.1	1.8e-40	68.03	putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6589940.1	4.1e-40	67.21	putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. so...	[more]
KGN56101.1	5.9e-39	44.14	hypothetical protein Csa_010492 [Cucumis sativus]	[more]
KAA0043114.1	2.5e-37	42.79	putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYJ96217.1 put...	[more]
XP_031736688.1	2.1e-36	42.92	uncharacterized protein LOC116402065 [Cucumis sativus]	[more]

BLAST of Sed0027145 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZR14	1.8e-14	42.20	Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZR15	7.9e-10	35.64	Putative B3 domain-containing protein At4g03160 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LM90	2.1e-07	41.77	B3 domain-containing protein At1g20600 OS=Arabidopsis thaliana OX=3702 GN=At1g20...	[more]

BLAST of Sed0027145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7L0	2.9e-39	44.14	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073910 PE=4 ...	[more]
A0A5D3BAS8	1.2e-37	42.79	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LC65	1.1e-35	61.86	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G609250 PE=4 ...	[more]
A0A6J1CTE7	2.9e-31	52.32	putative B3 domain-containing protein At4g03170 OS=Momordica charantia OX=3673 G...	[more]
A0A2P6RSD2	2.2e-23	47.06	Putative transcription factor B3-Domain family OS=Rosa chinensis OX=74649 GN=Rch...	[more]

BLAST of Sed0027145 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03170.1	1.3e-15	42.20	AP2/B3-like transcriptional factor family protein	[more]
AT4G03160.1	5.6e-11	35.64	BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor f...	[more]
AT1G20600.1	1.5e-08	41.77	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 87..191 e-value: 5.0E-4 score: 29.4
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 85..192 e-value: 2.79008E-11 score: 55.7969
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 78..196 e-value: 2.2E-19 score: 71.1
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 85..180
None	No IPR available	PANTHER	PTHR31541:SF28	B3 DOMAIN PLANT PROTEIN	coord: 67..193
IPR005508	B3 domain-containing protein At2g31720-like	PANTHER	PTHR31541	B3 DOMAIN PLANT PROTEIN-RELATED	coord: 67..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027145.1	Sed0027145.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding