Sed0027056 (gene) Chayote v1

Overview


Name	Sed0027056
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box domain-containing protein
Location	LG10: 32514061 .. 32515245 (+)
RNA-Seq Expression	Sed0027056
Synteny	Sed0027056

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTGTTGAGTTGCCCTAGCATGGACCGAATCAGCCTCTTACCGGACCTTCTTCTTCATGAAATTCTGTCTTTTGTGGACTCAAAATCAGTTGTCCAGACTTGTGTTCTATCGAAACGGTGGAAAAGCCTTTGGATTGAAACCCCAACTCTGAATTTCAATTTCCAGTGTGAAGAATCAAAGGATTTTTCGGCGGAGGGCTTCGTCTGCATCTTTTTAGCCAAACATCGCTCTAATTTCATAAAAAAGTTGAGTTTCTGTTCCTCTTCTTCAATGGATTCCCACGAAGCCCTTCTCATAGCGGACCTGTTGCTGTGCTATGCACGGCACCACACGGTTCGACAAATTCACCTCAACCTCTTCAACACTCCTTTAAAAGCAGATCTTTTGTGCAACAAAGAAGTAAATATGACGGTTGATGACTCTCATTTTGTTGGGGGTGATGACTCAGTCTTACATATGTTGAAAGAGACCATTCCTCACCTGCTTCAAGTGTTCCATTACGCCCACTCTTTTACCCTTCCTTGGAAGGCAATGGAGGTATCTCTAACTAATATTTATTCTCATCCATTTTTCTTATCTCTCCCCAATTCCTTTATTGACTTCTTGATGGATGCTTTCTTTCGCAAGATGATATTGTCGGATCCTTCTGATTTAAGGGTGGTTTTTTTTCGGAATTTGCGATATTTGAAGTTGAAAACAAACGCAACCGATCGTAACACAAACTTGTCTGTTGCTACCGTGATGAACTCGTTGAACTGCCCAAAATTACAGAAGTTGGAGTTTGTCCTCAATCAGGTCTTTTTTTTATTATTATTATTTTTTTTTTTTTGTATATATGAATTATGATGGGATAAAAAGTTTTAAATCGCTAACCTTAATTTGCAGGAGTAACTACAAAATGGGTTTATGCTGGGTTTTTGGATGCTGAATGGCTCCACGTCTATCAGTTGTTATCTTTTTAAGCCCTACTTTGAATTTTCCTAATATACTCTTTATTTTTAATTCTAGCATAGGGACTCTTATTTAATTTCCAAGTTTCTCTCTTGTGTTTTCCAATATGTAGATGAAAAGTATCTTAGAGACTGTTTTGATGAAATTTTAGAAGAGTGTTTCGTTAATAACTTGTTTGGATCTAGTTTTTTATAGTGTTTCATATAGTGATAATTAATAGCTCGTTTGGAT

mRNA sequence

GGTTTGTTGAGTTGCCCTAGCATGGACCGAATCAGCCTCTTACCGGACCTTCTTCTTCATGAAATTCTGTCTTTTGTGGACTCAAAATCAGTTGTCCAGACTTGTGTTCTATCGAAACGGTGGAAAAGCCTTTGGATTGAAACCCCAACTCTGAATTTCAATTTCCAGTGTGAAGAATCAAAGGATTTTTCGGCGGAGGGCTTCGTCTGCATCTTTTTAGCCAAACATCGCTCTAATTTCATAAAAAAGTTGAGTTTCTGTTCCTCTTCTTCAATGGATTCCCACGAAGCCCTTCTCATAGCGGACCTGTTGCTGTGCTATGCACGGCACCACACGGTTCGACAAATTCACCTCAACCTCTTCAACACTCCTTTAAAAGCAGATCTTTTGTGCAACAAAGAAGTAAATATGACGGTTGATGACTCTCATTTTGTTGGGGGTGATGACTCAGTCTTACATATGTTGAAAGAGACCATTCCTCACCTGCTTCAAGTGTTCCATTACGCCCACTCTTTTACCCTTCCTTGGAAGGCAATGGAGATGATATTGTCGGATCCTTCTGATTTAAGGGTGGTTTTTTTTCGGAATTTGCGATATTTGAAGTTGAAAACAAACGCAACCGATCGTAACACAAACTTGTCTGTTGCTACCGTGATGAACTCGTTGAACTGCCCAAAATTACAGAAGTTGGAGTTTGTCCTCAATCAGGAGTAACTACAAAATGGGTTTATGCTGGGTTTTTGGATGCTGAATGGCTCCACGTCTATCAGTTGTTATCTTTTTAAGCCCTACTTTGAATTTTCCTAATATACTCTTTATTTTTAATTCTAGCATAGGGACTCTTATTTAATTTCCAAGTTTCTCTCTTGTGTTTTCCAATATGTAGATGAAAAGTATCTTAGAGACTGTTTTGATGAAATTTTAGAAGAGTGTTTCGTTAATAACTTGTTTGGATCTAGTTTTTTATAGTGTTTCATATAGTGATAATTAATAGCTCGTTTGGAT

Coding sequence (CDS)

ATGGACCGAATCAGCCTCTTACCGGACCTTCTTCTTCATGAAATTCTGTCTTTTGTGGACTCAAAATCAGTTGTCCAGACTTGTGTTCTATCGAAACGGTGGAAAAGCCTTTGGATTGAAACCCCAACTCTGAATTTCAATTTCCAGTGTGAAGAATCAAAGGATTTTTCGGCGGAGGGCTTCGTCTGCATCTTTTTAGCCAAACATCGCTCTAATTTCATAAAAAAGTTGAGTTTCTGTTCCTCTTCTTCAATGGATTCCCACGAAGCCCTTCTCATAGCGGACCTGTTGCTGTGCTATGCACGGCACCACACGGTTCGACAAATTCACCTCAACCTCTTCAACACTCCTTTAAAAGCAGATCTTTTGTGCAACAAAGAAGTAAATATGACGGTTGATGACTCTCATTTTGTTGGGGGTGATGACTCAGTCTTACATATGTTGAAAGAGACCATTCCTCACCTGCTTCAAGTGTTCCATTACGCCCACTCTTTTACCCTTCCTTGGAAGGCAATGGAGATGATATTGTCGGATCCTTCTGATTTAAGGGTGGTTTTTTTTCGGAATTTGCGATATTTGAAGTTGAAAACAAACGCAACCGATCGTAACACAAACTTGTCTGTTGCTACCGTGATGAACTCGTTGAACTGCCCAAAATTACAGAAGTTGGAGTTTGTCCTCAATCAGGAGTAA

Protein sequence

MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIHLNLFNTPLKADLLCNKEVNMTVDDSHFVGGDDSVLHMLKETIPHLLQVFHYAHSFTLPWKAMEMILSDPSDLRVVFFRNLRYLKLKTNATDRNTNLSVATVMNSLNCPKLQKLEFVLNQE

Homology

[Close]

BLAST of Sed0027056 vs. NCBI nr
Match: KAE8649006.1 (hypothetical protein Csa_008454 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 7.0e-23
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFN---------FQCEE 61
           DRISLLPD LLHEILSF+++KSVVQTCVLSKRWK+LW E PTLNF+         F+ EE
Sbjct: 12  DRISLLPDCLLHEILSFLNTKSVVQTCVLSKRWKTLWTEIPTLNFDYNSSYSFSIFKTEE 71

Query: 62  ---SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQI 116
              SK  S + F+   L+K R+  I+KL++  +SS + ++  ++AD L+ YAR H+V+Q+
Sbjct: 72  DDISKQTSFKNFIIRVLSKLRTKSIRKLAY--TSSKNRYDLTILADFLISYARSHSVQQL 131

[Close]

BLAST of Sed0027056 vs. NCBI nr
Match: XP_004141639.1 (F-box/LRR-repeat protein At3g26922 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 7.0e-23
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFN---------FQCEE 61
           DRISLLPD LLHEILSF+++KSVVQTCVLSKRWK+LW E PTLNF+         F+ EE
Sbjct: 12  DRISLLPDCLLHEILSFLNTKSVVQTCVLSKRWKTLWTEIPTLNFDYNSSYSFSIFKTEE 71

Query: 62  ---SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQI 116
              SK  S + F+   L+K R+  I+KL++  +SS + ++  ++AD L+ YAR H+V+Q+
Sbjct: 72  DDISKQTSFKNFIIRVLSKLRTKSIRKLAY--TSSKNRYDLTILADFLISYARSHSVQQL 131

[Close]

BLAST of Sed0027056 vs. NCBI nr
Match: XP_008459618.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-19
Identity = 101/333 (30.33%), Postives = 146/333 (43.84%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQC 61
           DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  
Sbjct: 17  DRISLLPDSLLHHILSTFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYDD 76

Query: 62  EESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIH 121
           EESK  S + F+   L+KH +  I+KL++ SS + D  E++L+ +LL+CYA  H V+Q+ 
Sbjct: 77  EESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGD--ESVLV-ELLICYAGSHNVQQLC 136

Query: 122 LNLFNT---------PLKADLL--------------------------CN---------- 181
           +N +N          P+ + L+                          C+          
Sbjct: 137 VNTYNIGIYEWDYCFPICSSLIELKMVCGFVDDWGVLALPSLKILEIQCDWSARDERANY 196

Query: 182 ------------------------------------------------KEVNMTVDDSHF 231
                                                           ++V++ + DS F
Sbjct: 197 DGITMFSGCPNLESLVLVDYLFESATISAPRLENFKLCASHDMELTFPQKVDIQLKDSVF 256

[Close]

BLAST of Sed0027056 vs. NCBI nr
Match: KAA0039267.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQC 61
           DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  
Sbjct: 17  DRISLLPDTLLHHILSSFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYDD 76

Query: 62  EESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIH 116
           EESK  S + F+   L+KH +  I+KL++ SS + D  E++L+ +LL+CYA  H V+Q+ 
Sbjct: 77  EESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGD--ESVLV-ELLICYAGSHNVQQLC 136

[Close]

BLAST of Sed0027056 vs. NCBI nr
Match: XP_008459617.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-18
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQC 61
           DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  
Sbjct: 17  DRISLLPDSLLHHILSTFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYDD 76

Query: 62  EESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIH 116
           EESK  S + F+   L+KH +  I+KL++ SS + D  E++L+ +LL+CYA  H V+Q+ 
Sbjct: 77  EESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGD--ESVLV-ELLICYAGSHNVQQLC 136

[Close]

BLAST of Sed0027056 vs. ExPASy Swiss-Prot
Match: Q9LJF8 (F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN=At3g26922 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-10
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 2  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGF 61
          DRIS LP+ LL +ILS +  K VV T VLSK W+SLW   PTL F+++  +S+D +    
Sbjct: 14 DRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYENNQSEDETYSEI 73

Query: 62 VCIFLAKHRSNFIKKL 78
          VC  L  +++ F++ L
Sbjct: 74 VCRLLLSNKAPFLESL 89

[Close]

BLAST of Sed0027056 vs. ExPASy Swiss-Prot
Match: Q1PFK0 (F-box/LRR-repeat protein At1g55660 OS=Arabidopsis thaliana OX=3702 GN=At1g55660 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-09
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 1   MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAE 60
           MD+IS LPD LL ++LSF+ +K  V T +LS RWKSLW+  P L +NF+    S+     
Sbjct: 52  MDKISQLPDELLVKVLSFLSTKDAVSTSILSMRWKSLWMWLPKLEYNFRHYSVSEGQGLA 111

Query: 61  GFVCIFLAKHRSNFIKKLS----FCSSSSMDSHEALLIADLLLCYARHHTVRQIHLNLFN 116
            F+   L  H++  I+ LS    + +  S+   +  L   L +  +    VR++ L LFN
Sbjct: 112 RFITSSLRVHKAPAIESLSLKFRYGAIGSIKPKDIYLWVSLAVHVS---NVRELSLKLFN 168

[Close]

BLAST of Sed0027056 vs. ExPASy Swiss-Prot
Match: Q9FFW2 (FBD-associated F-box protein At5g38590 OS=Arabidopsis thaliana OX=3702 GN=At5g38590 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.6e-08
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAE 60
          MD+I+ LPD LL +ILS+V +   V T +LSKRW+ LW+  P L++  + C +  D    
Sbjct: 1  MDKINGLPDDLLVKILSYVPTDIAVSTSILSKRWEFLWMWLPNLDYTSRWCRKPGDVGLR 60

Query: 61 GFVCIFLAKHRSNFIKKLSFCSSS 84
           F+   L  HR+  I+ L F S+S
Sbjct: 61 DFIHKNLPLHRAPVIESLRFHSNS 84

[Close]

BLAST of Sed0027056 vs. ExPASy Swiss-Prot
Match: Q9FM87 (Putative FBD-associated F-box protein At5g56440 OS=Arabidopsis thaliana OX=3702 GN=At5g56440 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-07
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 1   MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNF-NFQCEESKDFSAE 60
           MDRISLLPD ++ +ILSFV +K VV T +LSKRW+ LW   P L++ +    +++ + A 
Sbjct: 1   MDRISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRYLWKHVPKLDYRDPSLVDTEHWRAS 60

Query: 61  GFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIHL 112
            FV  FL  H +  ++ L    S +    +     +  +  A    VR +H+
Sbjct: 61  RFVDKFLLLHEAPVLETLHLSLSRNCPPSD----IETWISVAISRRVRNLHI 108

[Close]

BLAST of Sed0027056 vs. ExPASy Swiss-Prot
Match: Q9LYZ4 (F-box/LRR-repeat protein At5g02910 OS=Arabidopsis thaliana OX=3702 GN=At5g02910 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-07
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEG 60
          MD IS LPD +LH ILS V +KS ++T +LSKRW+ +W ETP+L+ +  C  +   S + 
Sbjct: 10 MDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSETPSLSID--CRRADPNSIDK 69

Query: 61 FVCIFLAKHRSNF 74
           +  F A   ++F
Sbjct: 70 TLSFFSAPKITSF 80

[Close]

BLAST of Sed0027056 vs. ExPASy TrEMBL
Match: A0A0A0KSW6 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-23
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFN---------FQCEE 61
           DRISLLPD LLHEILSF+++KSVVQTCVLSKRWK+LW E PTLNF+         F+ EE
Sbjct: 12  DRISLLPDCLLHEILSFLNTKSVVQTCVLSKRWKTLWTEIPTLNFDYNSSYSFSIFKTEE 71

Query: 62  ---SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQI 116
              SK  S + F+   L+K R+  I+KL++  +SS + ++  ++AD L+ YAR H+V+Q+
Sbjct: 72  DDISKQTSFKNFIIRVLSKLRTKSIRKLAY--TSSKNRYDLTILADFLISYARSHSVQQL 131

[Close]

BLAST of Sed0027056 vs. ExPASy TrEMBL
Match: A0A1S3CBU6 (F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.8e-20
Identity = 101/333 (30.33%), Postives = 146/333 (43.84%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQC 61
           DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  
Sbjct: 17  DRISLLPDSLLHHILSTFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYDD 76

Query: 62  EESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIH 121
           EESK  S + F+   L+KH +  I+KL++ SS + D  E++L+ +LL+CYA  H V+Q+ 
Sbjct: 77  EESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGD--ESVLV-ELLICYAGSHNVQQLC 136

Query: 122 LNLFNT---------PLKADLL--------------------------CN---------- 181
           +N +N          P+ + L+                          C+          
Sbjct: 137 VNTYNIGIYEWDYCFPICSSLIELKMVCGFVDDWGVLALPSLKILEIQCDWSARDERANY 196

Query: 182 ------------------------------------------------KEVNMTVDDSHF 231
                                                           ++V++ + DS F
Sbjct: 197 DGITMFSGCPNLESLVLVDYLFESATISAPRLENFKLCASHDMELTFPQKVDIQLKDSVF 256

[Close]

BLAST of Sed0027056 vs. ExPASy TrEMBL
Match: A0A5A7TCF1 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00570 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQC 61
           DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  
Sbjct: 17  DRISLLPDTLLHHILSSFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYDD 76

Query: 62  EESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIH 116
           EESK  S + F+   L+KH +  I+KL++ SS + D  E++L+ +LL+CYA  H V+Q+ 
Sbjct: 77  EESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGD--ESVLV-ELLICYAGSHNVQQLC 136

[Close]

BLAST of Sed0027056 vs. ExPASy TrEMBL
Match: A0A1S3CB41 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQC 61
           DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  
Sbjct: 17  DRISLLPDSLLHHILSTFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYDD 76

Query: 62  EESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIH 116
           EESK  S + F+   L+KH +  I+KL++ SS + D  E++L+ +LL+CYA  H V+Q+ 
Sbjct: 77  EESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGD--ESVLV-ELLICYAGSHNVQQLC 136

[Close]

BLAST of Sed0027056 vs. ExPASy TrEMBL
Match: A0A6J1CKA9 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica charantia OX=3673 GN=LOC111012077 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-18
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 2   DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQC---EE------ 61
           DRISLLPD LL  ILS +++K VVQTCVLSKRWK+LW   PTLNFNF+    EE      
Sbjct: 118 DRISLLPDCLLCHILSNINTKQVVQTCVLSKRWKTLWTSIPTLNFNFKSYPFEEPSLNAC 177

Query: 62  -SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIHL 115
            SK  S + F+   L++     I+KLS+ SS + D    +++ +LL+C+AR H VR+++L
Sbjct: 178 RSKQSSFKNFIFRILSERCRTKIQKLSYTSSGNEDE---VVLVELLICFARRHNVRELYL 237

[Close]

BLAST of Sed0027056 vs. TAIR 10
Match: AT3G26922.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-11
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 2  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGF 61
          DRIS LP+ LL +ILS +  K VV T VLSK W+SLW   PTL F+++  +S+D +    
Sbjct: 14 DRISDLPEALLLQILSMLPVKDVVTTSVLSKPWRSLWKLVPTLKFDYENNQSEDETYSEI 73

Query: 62 VCIFLAKHRSNFIKKL 78
          VC  L  +++ F++ L
Sbjct: 74 VCRLLLSNKAPFLESL 89

[Close]

BLAST of Sed0027056 vs. TAIR 10
Match: AT1G55660.1 (FBD, F-box and Leucine Rich Repeat domains containing protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-10
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 1   MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAE 60
           MD+IS LPD LL ++LSF+ +K  V T +LS RWKSLW+  P L +NF+    S+     
Sbjct: 52  MDKISQLPDELLVKVLSFLSTKDAVSTSILSMRWKSLWMWLPKLEYNFRHYSVSEGQGLA 111

Query: 61  GFVCIFLAKHRSNFIKKLS----FCSSSSMDSHEALLIADLLLCYARHHTVRQIHLNLFN 116
            F+   L  H++  I+ LS    + +  S+   +  L   L +  +    VR++ L LFN
Sbjct: 112 RFITSSLRVHKAPAIESLSLKFRYGAIGSIKPKDIYLWVSLAVHVS---NVRELSLKLFN 168

[Close]

BLAST of Sed0027056 vs. TAIR 10
Match: AT1G55660.2 (FBD, F-box and Leucine Rich Repeat domains containing protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-10
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 1   MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAE 60
           MD+IS LPD LL ++LSF+ +K  V T +LS RWKSLW+  P L +NF+    S+     
Sbjct: 52  MDKISQLPDELLVKVLSFLSTKDAVSTSILSMRWKSLWMWLPKLEYNFRHYSVSEGQGLA 111

Query: 61  GFVCIFLAKHRSNFIKKLS----FCSSSSMDSHEALLIADLLLCYARHHTVRQIHLNLFN 116
            F+   L  H++  I+ LS    + +  S+   +  L   L +  +    VR++ L LFN
Sbjct: 112 RFITSSLRVHKAPAIESLSLKFRYGAIGSIKPKDIYLWVSLAVHVS---NVRELSLKLFN 168

[Close]

BLAST of Sed0027056 vs. TAIR 10
Match: AT5G38590.2 (F-box/RNI-like/FBD-like domains-containing protein )

HSP 1 Score: 58.9 bits (141), Expect = 6.1e-09
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAE 60
          MD+I+ LPD LL +ILS+V +   V T +LSKRW+ LW+  P L++  + C +  D    
Sbjct: 1  MDKINGLPDDLLVKILSYVPTDIAVSTSILSKRWEFLWMWLPNLDYTSRWCRKPGDVGLR 60

Query: 61 GFVCIFLAKHRSNFIKKLSFCSSS 84
           F+   L  HR+  I+ L F S+S
Sbjct: 61 DFIHKNLPLHRAPVIESLRFHSNS 84

[Close]

BLAST of Sed0027056 vs. TAIR 10
Match: AT5G38590.1 (F-box/RNI-like/FBD-like domains-containing protein )

HSP 1 Score: 58.9 bits (141), Expect = 6.1e-09
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAE 60
          MD+I+ LPD LL +ILS+V +   V T +LSKRW+ LW+  P L++  + C +  D    
Sbjct: 1  MDKINGLPDDLLVKILSYVPTDIAVSTSILSKRWEFLWMWLPNLDYTSRWCRKPGDVGLR 60

Query: 61 GFVCIFLAKHRSNFIKKLSFCSSS 84
           F+   L  HR+  I+ L F S+S
Sbjct: 61 DFIHKNLPLHRAPVIESLRFHSNS 84

The following BLAST results are available for this feature:

BLAST of Sed0027056 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649006.1	7.0e-23	52.38	hypothetical protein Csa_008454 [Cucumis sativus]	[more]
XP_004141639.1	7.0e-23	52.38	F-box/LRR-repeat protein At3g26922 [Cucumis sativus]	[more]
XP_008459618.1	1.6e-19	30.33	PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo]	[more]
KAA0039267.1	2.3e-18	48.80	F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat...	[more]
XP_008459617.1	4.0e-18	48.80	PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo]	[more]

BLAST of Sed0027056 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJF8	5.4e-10	44.74	F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN=At3g26922 ...	[more]
Q1PFK0	7.8e-09	35.83	F-box/LRR-repeat protein At1g55660 OS=Arabidopsis thaliana OX=3702 GN=At1g55660 ...	[more]
Q9FFW2	8.6e-08	40.48	FBD-associated F-box protein At5g38590 OS=Arabidopsis thaliana OX=3702 GN=At5g38...	[more]
Q9FM87	1.1e-07	34.82	Putative FBD-associated F-box protein At5g56440 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LYZ4	1.1e-07	42.47	F-box/LRR-repeat protein At5g02910 OS=Arabidopsis thaliana OX=3702 GN=At5g02910 ...	[more]

BLAST of Sed0027056 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSW6	3.4e-23	52.38	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650430 PE=4 ...	[more]
A0A1S3CBU6	7.8e-20	30.33	F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5A7TCF1	1.1e-18	48.80	F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CB41	1.9e-18	48.80	F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1CKA9	3.3e-18	47.15	LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica ch...	[more]

BLAST of Sed0027056 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26922.1	3.8e-11	44.74	F-box/RNI-like superfamily protein	[more]
AT1G55660.1	5.5e-10	35.83	FBD, F-box and Leucine Rich Repeat domains containing protein	[more]
AT1G55660.2	5.5e-10	35.83	FBD, F-box and Leucine Rich Repeat domains containing protein	[more]
AT5G38590.2	6.1e-09	40.48	F-box/RNI-like/FBD-like domains-containing protein	[more]
AT5G38590.1	6.1e-09	40.48	F-box/RNI-like/FBD-like domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 7..48 e-value: 0.0015 score: 27.8
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 3..38 e-value: 7.9E-6 score: 25.6
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 1..37 score: 9.232525
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..59 e-value: 8.7E-7 score: 30.5
None	No IPR available	PANTHER	PTHR34223:SF51	OS11G0201299 PROTEIN	coord: 2..224
None	No IPR available	PANTHER	PTHR34223	OS11G0201299 PROTEIN	coord: 2..224
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 2..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027056.1	Sed0027056.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding