Sed0026977 (gene) Chayote v1

Overview


Name	Sed0026977
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Translocator protein-like protein
Location	LG07: 2474213 .. 2475087 (-)
RNA-Seq Expression	Sed0026977
Synteny	Sed0026977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCAACTCCACGTGTCCTTTTCACCTCCTTAAATCCCCTTCCCTTTGCTTCAATCTCCCCCACCGCCAAACATGGCTTCCACCGAACTAAAACACCGCAAACCAGACGACTCCAAACCTGACGGCGGCGCCGCCACCACCACCACCACCGGAACACACAACAAAGCCATGGCCAAACGAGGCCTCAAGTCCCTTGCTCTCGCAATCTCCATCCCTCTCTCCCTCACCTTCTCCCTCTTCCTCCTCACCAACCCGCAACACTACTACCCTCCGTCGACGAAACCCTTCTGGGTTCCCTCGACGAGGGTCGTAAGTGTTGGGTCTTTGGCTTCTAGCTTACTGATGGGCGTCTCGGCGTGGCTCGTGTGGGCCGAGGGCGGCTTCCACGCTAGGCCCAACACCTTGTACCTGTATGTTGTGTACTCGGTGCTGTGCTTGGCGTGGTATGCGCTCACTCTTGGAGCTGGCGCCAGGAGGTTGGGTTTGGCGGCGTGCTTGGGGAAGACGGCGGCGTTGGTTGGGTGTCATCGCTTGTTTCGGGGAGTGAGTCGGACGGCGGCGGACTTGGTTAAGCCTTGCTTGGCGTGGTCTGTGTTTCTCACTGTTGTTAACCTTGCCATGCTTTCTCTTTGAGAGCTTTGAATATGGAGAGAGTTTTGTTTGCTTTGCTTTTGTTGTACGATGTCGTTTGAATGCATGTGTTTATGTTGCACCCTTTTTTTTTTCCTTGCATTTGTGATAAATAAAATCTGGTTGTGATTTGTTATTGCTAGGATTTGATGATGTTGCTTGTTTAATCGGATTGATATTTGCCAACAAAAGCCAGATAAAGGCAGAAATGAATAAGTTAAAAAGGCCGACATATTCTCCCAGG

mRNA sequence

CCATCAACTCCACGTGTCCTTTTCACCTCCTTAAATCCCCTTCCCTTTGCTTCAATCTCCCCCACCGCCAAACATGGCTTCCACCGAACTAAAACACCGCAAACCAGACGACTCCAAACCTGACGGCGGCGCCGCCACCACCACCACCACCGGAACACACAACAAAGCCATGGCCAAACGAGGCCTCAAGTCCCTTGCTCTCGCAATCTCCATCCCTCTCTCCCTCACCTTCTCCCTCTTCCTCCTCACCAACCCGCAACACTACTACCCTCCGTCGACGAAACCCTTCTGGGTTCCCTCGACGAGGGTCGTAAGTGTTGGGTCTTTGGCTTCTAGCTTACTGATGGGCGTCTCGGCGTGGCTCGTGTGGGCCGAGGGCGGCTTCCACGCTAGGCCCAACACCTTGTACCTGTATGTTGTGTACTCGGTGCTGTGCTTGGCGTGGTATGCGCTCACTCTTGGAGCTGGCGCCAGGAGGTTGGGTTTGGCGGCGTGCTTGGGGAAGACGGCGGCGTTGGTTGGGTGTCATCGCTTGTTTCGGGGAGTGAGTCGGACGGCGGCGGACTTGGTTAAGCCTTGCTTGGCGTGGTCTGTGTTTCTCACTGTTGTTAACCTTGCCATGCTTTCTCTTTGAGAGCTTTGAATATGGAGAGAGTTTTGTTTGCTTTGCTTTTGTTGTACGATGTCGTTTGAATGCATGTGTTTATGTTGCACCCTTTTTTTTTTCCTTGCATTTGTGATAAATAAAATCTGGTTGTGATTTGTTATTGCTAGGATTTGATGATGTTGCTTGTTTAATCGGATTGATATTTGCCAACAAAAGCCAGATAAAGGCAGAAATGAATAAGTTAAAAAGGCCGACATATTCTCCCAGG

Coding sequence (CDS)

ATGGCTTCCACCGAACTAAAACACCGCAAACCAGACGACTCCAAACCTGACGGCGGCGCCGCCACCACCACCACCACCGGAACACACAACAAAGCCATGGCCAAACGAGGCCTCAAGTCCCTTGCTCTCGCAATCTCCATCCCTCTCTCCCTCACCTTCTCCCTCTTCCTCCTCACCAACCCGCAACACTACTACCCTCCGTCGACGAAACCCTTCTGGGTTCCCTCGACGAGGGTCGTAAGTGTTGGGTCTTTGGCTTCTAGCTTACTGATGGGCGTCTCGGCGTGGCTCGTGTGGGCCGAGGGCGGCTTCCACGCTAGGCCCAACACCTTGTACCTGTATGTTGTGTACTCGGTGCTGTGCTTGGCGTGGTATGCGCTCACTCTTGGAGCTGGCGCCAGGAGGTTGGGTTTGGCGGCGTGCTTGGGGAAGACGGCGGCGTTGGTTGGGTGTCATCGCTTGTTTCGGGGAGTGAGTCGGACGGCGGCGGACTTGGTTAAGCCTTGCTTGGCGTGGTCTGTGTTTCTCACTGTTGTTAACCTTGCCATGCTTTCTCTTTGA

Protein sequence

MASTELKHRKPDDSKPDGGAATTTTTGTHNKAMAKRGLKSLALAISIPLSLTFSLFLLTNPQHYYPPSTKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYVVYSVLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVFLTVVNLAMLSL

Homology

[Close]

BLAST of Sed0026977 vs. NCBI nr
Match: XP_038897197.1 (translocator protein homolog [Benincasa hispida])

HSP 1 Score: 249.6 bits (636), Expect = 2.1e-62
Identity = 136/194 (70.10%), Postives = 153/194 (78.87%), Query Frame = 0


Query: 1   MASTELKHRKPDDSK------PDGGAATTTTTGTHNKAMAKRGLKSLALAISIPLSLT-F 60
           MASTELKHRK DDS        D G A        NKA+ KRGLKSLALAI+IP+SLT  
Sbjct: 1   MASTELKHRKTDDSSSPTVPAADNGGAKK----AKNKAITKRGLKSLALAITIPMSLTLL 60

Query: 61  SLFLLTNPQHYYPPS-TKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLY 120
           S+FLL+NP++YYP S  +PFW+PS +VV+ GSL SSLLMGV+AWLVWAEGGFHA+PN LY
Sbjct: 61  SVFLLSNPKNYYPASAARPFWIPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHAKPNALY 120

Query: 121 LYVVYSVLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAW 180
           LY +Y  LC+AWYAL  GAGARRLG  ACLGKTAALVGC RLFRGV+  AADLVKPCL W
Sbjct: 121 LYSLYLALCVAWYALVFGAGARRLGSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVW 180

Query: 181 SVFLTVVNLAMLSL 187
           SVFLTVVNL M+SL
Sbjct: 181 SVFLTVVNLTMVSL 190

[Close]

BLAST of Sed0026977 vs. NCBI nr
Match: KAA0068008.1 (translocator protein-like protein [Cucumis melo var. makuwa] >TYK18119.1 translocator protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.0 bits (619), Expect = 2.0e-60
Identity = 133/191 (69.63%), Postives = 148/191 (77.49%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAATTTTTGT---HNKAMAKRGLKSLALAISIPLSLT-FSLF 60
           MAST+LKHRK DDS P          GT    NK +AKRGL+SLALAISIP+SLT   +F
Sbjct: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLALAISIPVSLTLLFIF 60

Query: 61  LLTNPQHYYPPST-KPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYV 120
           L +N ++YYP S  +PFWVPST+VV+ GSL SSLLMGV+AWLVWAEGGFH+RPN LYLY 
Sbjct: 61  LFSNSKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120

Query: 121 VYSVLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVF 180
           +Y VL LAWYAL  GAGARRL   ACLGKTAALVGC RLFRGV+  AADLVKPCL WSV 
Sbjct: 121 LYLVLSLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180

Query: 181 LTVVNLAMLSL 187
           LTVVNL M SL
Sbjct: 181 LTVVNLTMASL 191

[Close]

BLAST of Sed0026977 vs. NCBI nr
Match: XP_022992488.1 (translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 239.2 bits (609), Expect = 2.9e-59
Identity = 125/188 (66.49%), Postives = 150/188 (79.79%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAA-TTTTTGTHNKAMAKRGLKSLALAISIPLSLT-FSLFLL 60
           MASTELKHR   DS     AA   +T    NKA+AKRGLKSLA+A+SIP+++T  S+ LL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  TNPQHYYPPSTKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYVVYS 120
           + P++YYP +TKPFWVPS RVV+ GSLASSLLMG+S+WL WAEGGF A+PN LYLY +Y 
Sbjct: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120

Query: 121 VLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVFLTV 180
           VLC+AWY L LGAG+R LG  ACLGKTA LVGC RLFRGV+  AADLV+PCL WSVFLT+
Sbjct: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180

Query: 181 VNLAMLSL 187
           V+L M+S+
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of Sed0026977 vs. NCBI nr
Match: XP_023548365.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 3.7e-59
Identity = 122/187 (65.24%), Postives = 148/187 (79.14%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAATTTTTGTHNKAMAKRGLKSLALAISIPLSLT-FSLFLLT 60
           MASTELKHR   DS     A   +     NKA+AKRGLKSLA+A+SIP+++T  S+ LL+
Sbjct: 1   MASTELKHRTTGDSPAAPAADEASAKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLLS 60

Query: 61  NPQHYYPPSTKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYVVYSV 120
            P++YYP +TKPFWVPS RVV+ GSLASSLLMG+S+WL WAEGGF A+PN +YLY +Y V
Sbjct: 61  RPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNAVYLYTLYLV 120

Query: 121 LCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVFLTVV 180
           LC+AWY L LGAG+R LG  ACLGKTA LVGC RLFRGV+  AADLV+PCL WSVFLT+V
Sbjct: 121 LCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTIV 180

Query: 181 NLAMLSL 187
           +L M+S+
Sbjct: 181 SLTMVSV 187

[Close]

BLAST of Sed0026977 vs. NCBI nr
Match: KAG6575839.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-58
Identity = 125/191 (65.45%), Postives = 149/191 (78.01%), Query Frame = 0


Query: 1   MASTELKHRKPDDSK--PDGGAATTTTTGTH--NKAMAKRGLKSLALAISIPLSLT-FSL 60
           MASTELKHR   DS   P   AA    +     NKA+AKRGLKSLA+A+SIP+++T  S+
Sbjct: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  FLLTNPQHYYPPSTKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYV 120
            LL  P++YYP +TKPFWVPS RVV+ GSLASSLLMG+S+WL WAEGGF ARPN LYLY 
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 VYSVLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVF 180
           +Y VLC+AWY L LGAG+R LG  ACLGKTA LVGC RLFRGV+  AADLV+PCL WSVF
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180

Query: 181 LTVVNLAMLSL 187
           LT+V+L M+++
Sbjct: 181 LTIVSLTMVAV 191

[Close]

BLAST of Sed0026977 vs. ExPASy Swiss-Prot
Match: O82245 (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.0e-32
Identity = 81/197 (41.12%), Postives = 114/197 (57.87%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAATTTTTGTHNK-------------AMAKRGLKSLALAISI 60
           M S ++++R  DD      AATT    T  K             AMAKRGLKSL +A++ 
Sbjct: 1   MDSQDIRYRGGDDR----DAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAA 60

Query: 61  PLSLT-FSLFLLTNPQHYYPPSTKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHA 120
           P+ +T F+ + L     Y   +    W+P   ++    LASS LMG++AWLVW +GGFH 
Sbjct: 61  PVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHK 120

Query: 121 RPNTLYLYVVYSVLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLV 180
           +PN LYLY+   +LCL W  +T   G+   GLA  LG++AAL GC++ F  +S  A +LV
Sbjct: 121 KPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLV 180

Query: 181 KPCLAWSVFLTVVNLAM 184
           KPCLAW+ F+  VN+ +
Sbjct: 181 KPCLAWAAFVAAVNVKL 193

[Close]

BLAST of Sed0026977 vs. ExPASy TrEMBL
Match: A0A0A0KAU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.6e-62
Identity = 134/191 (70.16%), Postives = 150/191 (78.53%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAATTTTTGT---HNKAMAKRGLKSLALAISIPLSLT-FSLF 60
           MAST+LKHRK DDS P    +     GT    NK +AKRGL+SLALAISIP+SLT F + 
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  LLTNPQHYYPPST-KPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYV 120
           L +N ++YYP S  KPFWVPS +VV+ GSL SSLLMGV+AWLVWAEGGFHARPN LYLY 
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 VYSVLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVF 180
           +YSVLCL WYAL  GAGARRL   ACLGKTAALVGC RLFRGV+  AADLVKPCL WSV 
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTVVNLAMLSL 187
           LTVVNL ++SL
Sbjct: 181 LTVVNLTVVSL 191

[Close]

BLAST of Sed0026977 vs. ExPASy TrEMBL
Match: A0A5A7VJL5 (Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00470 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 9.6e-61
Identity = 133/191 (69.63%), Postives = 148/191 (77.49%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAATTTTTGT---HNKAMAKRGLKSLALAISIPLSLT-FSLF 60
           MAST+LKHRK DDS P          GT    NK +AKRGL+SLALAISIP+SLT   +F
Sbjct: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLALAISIPVSLTLLFIF 60

Query: 61  LLTNPQHYYPPST-KPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYV 120
           L +N ++YYP S  +PFWVPST+VV+ GSL SSLLMGV+AWLVWAEGGFH+RPN LYLY 
Sbjct: 61  LFSNSKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120

Query: 121 VYSVLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVF 180
           +Y VL LAWYAL  GAGARRL   ACLGKTAALVGC RLFRGV+  AADLVKPCL WSV 
Sbjct: 121 LYLVLSLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180

Query: 181 LTVVNLAMLSL 187
           LTVVNL M SL
Sbjct: 181 LTVVNLTMASL 191

[Close]

BLAST of Sed0026977 vs. ExPASy TrEMBL
Match: A0A6J1JZC9 (translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.4e-59
Identity = 125/188 (66.49%), Postives = 150/188 (79.79%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAA-TTTTTGTHNKAMAKRGLKSLALAISIPLSLT-FSLFLL 60
           MASTELKHR   DS     AA   +T    NKA+AKRGLKSLA+A+SIP+++T  S+ LL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  TNPQHYYPPSTKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYVVYS 120
           + P++YYP +TKPFWVPS RVV+ GSLASSLLMG+S+WL WAEGGF A+PN LYLY +Y 
Sbjct: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120

Query: 121 VLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVFLTV 180
           VLC+AWY L LGAG+R LG  ACLGKTA LVGC RLFRGV+  AADLV+PCL WSVFLT+
Sbjct: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180

Query: 181 VNLAMLSL 187
           V+L M+S+
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of Sed0026977 vs. ExPASy TrEMBL
Match: A0A6J1GQH6 (translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 9.0e-59
Identity = 124/188 (65.96%), Postives = 148/188 (78.72%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAATTTTTGTH-NKAMAKRGLKSLALAISIPLSLT-FSLFLL 60
           MASTELKHR   DS     AA   +     NKA+AKRGLKSLA+A+SIP+++T  S+ LL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  TNPQHYYPPSTKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYVVYS 120
             P++YYP +TKPFWVPS RVV+ GSLASSLLMG+S+WL WAEGGF ARPN LYLY +Y 
Sbjct: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120

Query: 121 VLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVFLTV 180
           VLC+AW+ L LGAG+R LG  ACLGKTA LVGC RLFRGV+  AADLV+PCL WSVFLT+
Sbjct: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180

Query: 181 VNLAMLSL 187
           V+L M+S+
Sbjct: 181 VSLTMVSV 188

[Close]

BLAST of Sed0026977 vs. ExPASy TrEMBL
Match: A0A6J1DBR2 (translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.3e-52
Identity = 113/186 (60.75%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAATTTTTGTHNKAMAKRGLKSLALAISIPLSLT-FSLFLLT 60
           MAS +LKHRKP +S     +AT T       A A+RGLKSLA+A+S+P+SL+  +++LL+
Sbjct: 1   MASPDLKHRKPTES---DDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLLS 60

Query: 61  NPQHYYPPSTKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHARPNTLYLYVVYSV 120
           +P  + P S KPFW PS   V++GS ASSLLMG + WLVWA+GGFH+ PN LYLY +Y +
Sbjct: 61  DPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYTLYVL 120

Query: 121 LCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLVKPCLAWSVFLTVV 180
           LC  WY L LGAGA RL   ACL KTAALVGC RLFR V+  AADLVKPCLAWSVFLTVV
Sbjct: 121 LCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTVV 180

Query: 181 NLAMLS 186
           NL M++
Sbjct: 181 NLTMVA 183

[Close]

BLAST of Sed0026977 vs. TAIR 10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related )

HSP 1 Score: 138.3 bits (347), Expect = 6.4e-33
Identity = 81/197 (41.12%), Postives = 114/197 (57.87%), Query Frame = 0


Query: 1   MASTELKHRKPDDSKPDGGAATTTTTGTHNK-------------AMAKRGLKSLALAISI 60
           M S ++++R  DD      AATT    T  K             AMAKRGLKSL +A++ 
Sbjct: 1   MDSQDIRYRGGDDR----DAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAA 60

Query: 61  PLSLT-FSLFLLTNPQHYYPPSTKPFWVPSTRVVSVGSLASSLLMGVSAWLVWAEGGFHA 120
           P+ +T F+ + L     Y   +    W+P   ++    LASS LMG++AWLVW +GGFH 
Sbjct: 61  PVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHK 120

Query: 121 RPNTLYLYVVYSVLCLAWYALTLGAGARRLGLAACLGKTAALVGCHRLFRGVSRTAADLV 180
           +PN LYLY+   +LCL W  +T   G+   GLA  LG++AAL GC++ F  +S  A +LV
Sbjct: 121 KPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLV 180

Query: 181 KPCLAWSVFLTVVNLAM 184
           KPCLAW+ F+  VN+ +
Sbjct: 181 KPCLAWAAFVAAVNVKL 193

The following BLAST results are available for this feature:

BLAST of Sed0026977 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897197.1	2.1e-62	70.10	translocator protein homolog [Benincasa hispida]	[more]
KAA0068008.1	2.0e-60	69.63	translocator protein-like protein [Cucumis melo var. makuwa] >TYK18119.1 translo...	[more]
XP_022992488.1	2.9e-59	66.49	translocator protein homolog [Cucurbita maxima]	[more]
XP_023548365.1	3.7e-59	65.24	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
KAG6575839.1	1.4e-58	65.45	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0026977 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82245	9.0e-32	41.12	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]

BLAST of Sed0026977 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU9	6.6e-62	70.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1	[more]
A0A5A7VJL5	9.6e-61	69.63	Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1JZC9	1.4e-59	66.49	translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV...	[more]
A0A6J1GQH6	9.0e-59	65.96	translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 ...	[more]
A0A6J1DBR2	1.3e-52	60.75	translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3...	[more]

BLAST of Sed0026977 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47770.1	6.4e-33	41.12	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 44..183 e-value: 8.9E-19 score: 67.9
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 30..186 e-value: 6.3E-30 score: 101.7
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 22..184
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 60..184 e-value: 1.15434E-23 score: 89.0932
IPR038330	TspO/MBR-related superfamily	GENE3D	1.20.1260.100	TspO/MBR protein	coord: 36..186 e-value: 1.0E-20 score: 75.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR10057:SF6	TSPO/MBR FAMILY PROTEIN	coord: 22..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026977.1	Sed0026977.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane